mRNA_A-nodosum_M_contig8696.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8696.1.1
Unique NamemRNA_A-nodosum_M_contig8696.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.250e-51
Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAFPLYSLSLS 327
            QMIGRAGRPQFDDHAVACILVHEPKKNF+KKFLYEPFPVES+LP +LHNHLSAECAGGAIR RRDAVDYLTWTFYFVRLLANPS+YGLE+    GV      L   +L+
Sbjct: 1824 QMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQEHLLGLVESTLA 1932          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A7S1T1Q3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1Q3_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 5.030e-40
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHF 297
            QM+GRAGRPQ+D H VA I+VHEPKKNFYKKFLYEPFPVES LP  L +H++AE  GG +R  +DA+DYLTWTF++ RLL NPSYY LE      V+ F
Sbjct:   19 QMMGRAGRPQYDKHGVAVIMVHEPKKNFYKKFLYEPFPVESSLPEQLPDHINAEVVGGTVRSMQDALDYLTWTFFYRRLLQNPSYYDLESTEAESVNGF 117          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A7S1CMX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMX3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 9.910e-40
Identity = 68/101 (67.33%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPG--ALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHF 297
            QM+GRAGRPQFD   VA ILVHEPKKNFY+KFLYEPFPVESQL    ALH+ L+AE AG AI+ R DA +YLTWT++F RL ANPSYY  E+  P G+  F
Sbjct:   35 QMMGRAGRPQFDTQGVAMILVHEPKKNFYRKFLYEPFPVESQLKAHHALHDALNAEIAGNAIKSRADAAEYLTWTYFFRRLCANPSYYDCEDGSPDGIRVF 135          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A835Z6M6_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M6_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.600e-39
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHF 297
            QMIGRAGRPQFD HAVA ILVHEPKKNF KKFLYEPFPVESQL GAL NH++AE AGGAI  R DA+ Y+TWT+ F R++ NPSYY LE+  P GV+ +
Sbjct: 1057 QMIGRAGRPQFDTHAVAVILVHEPKKNFLKKFLYEPFPVESQLAGALPNHINAEIAGGAIGSREDALAYMTWTYLFRRIVQNPSYYQLEDTTPEGVTAY 1155          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: UPI001EEBA4C6 (activating signal cointegrator 1 complex subunit 3-like isoform X1 n=3 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEBA4C6)

HSP 1 Score: 150 bits (379), Expect = 3.020e-39
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAFPLYSLSLS 327
            QM+GRAGRPQ+DDH VAC+LVH+ KK+FYKKFLYEPFPVES L   L  HL+AE   G I  ++DA+DYLTWTF+F RLL NP+YYGLE++ P  V+H+   L   SLS
Sbjct: 1665 QMMGRAGRPQYDDHGVACVLVHDIKKDFYKKFLYEPFPVESSLLDVLPEHLNAEIVAGTICSKQDAIDYLTWTFFFRRLLQNPAYYGLEQLEPTDVNHYLTSLIHRSLS 1773          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: E9H7W7_DAPPU (Uncharacterized protein n=6 Tax=Daphnia TaxID=6668 RepID=E9H7W7_DAPPU)

HSP 1 Score: 149 bits (377), Expect = 5.590e-39
Identity = 71/125 (56.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAFPLYSLSLSPAPSLFVCKNERKYGR 375
            QM+GRAGRPQ+DDH VAC+LVH+ KK+FYKKFLYEPFPVES L   L  HL+AE   G I  ++DA+DYLTWT++F RLL NP+YYGLE++ P  V+H+   L   SLS   +    + E + GR
Sbjct: 1419 QMMGRAGRPQYDDHGVACVLVHDIKKDFYKKFLYEPFPVESSLLDVLPEHLNAEIVAGTICSKQDAIDYLTWTYFFRRLLQNPAYYGLEQLEPTDVNHYLTSLIHRSLSVLEAASCLEIEDEGGR 1543          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A250WZI2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZI2_9CHLO)

HSP 1 Score: 149 bits (377), Expect = 5.630e-39
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEE 270
            QM+GRAGRPQ+D H VA I+VHEPKK FYK+FLYEPFPVES LPG L NH +AE   G I CR+DAVDYLTWTF+F RLL NPSYY LEE
Sbjct: 1761 QMMGRAGRPQYDKHGVAVIMVHEPKKQFYKRFLYEPFPVESSLPGQLANHFNAEVVAGTITCRQDAVDYLTWTFFFRRLLQNPSYYDLEE 1850          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A482UF37_9ARCH (DEAD/DEAH box helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UF37_9ARCH)

HSP 1 Score: 147 bits (372), Expect = 2.150e-38
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAFPL 309
            QM+GRAGRPQF++  VA ILVHEPKK FY+KFLYEPFPVESQL GAL +H++AE +GG+I CR DA++YLTWT++F RLL NP YY LE+  P GV  +   L
Sbjct:  394 QMMGRAGRPQFNETGVAVILVHEPKKKFYQKFLYEPFPVESQLRGALVDHINAEVSGGSIICRNDALEYLTWTYFFRRLLQNPGYYSLEDTSPAGVKEYLLAL 496          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A7S3UTV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK)

HSP 1 Score: 146 bits (369), Expect = 2.860e-38
Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAFPLYSLSLS 327
            QM+GRAGRPQFDD AVA +LVHEPKK FY+KFLY PFPVES L   LHNH+SAE AGG+I+ ++DAV+YLTWT++F RL+ NP+YY LE+  P GV  +   L    L+
Sbjct:  527 QMMGRAGRPQFDDTAVAAVLVHEPKKIFYQKFLYSPFPVESSLREYLHNHISAEVAGGSIKSKQDAVEYLTWTYFFRRLVMNPTYYHLEDPSPEGVQDYLLSLVDAVLT 635          
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Match: A0A7S0PBS9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PBS9_CAFRO)

HSP 1 Score: 147 bits (371), Expect = 3.560e-38
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHLSAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAFPLYSLSLS 327
            QM+GRAGRPQFDD AVA I+VHEPKK FY+KFLYEPFPVESQL G LH+H++AE A G IR R DA D+LTWT++F RL+ NPS+Y L+   P  VS +   L   +LS
Sbjct: 1212 QMMGRAGRPQFDDDAVAVIMVHEPKKQFYRKFLYEPFPVESQLLGCLHDHINAEVAAGTIRSRADAADWLTWTYFFRRLVRNPSFYHLDATDPAAVSAYLAELVDSTLS 1320          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8696.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI1.250e-5179.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1T1Q3_9CHLO5.030e-4065.66Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S1CMX3_9STRA9.910e-4067.33Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835Z6M6_9STRA1.600e-3971.72Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
UPI001EEBA4C63.020e-3963.30activating signal cointegrator 1 complex subunit 3... [more]
E9H7W7_DAPPU5.590e-3956.80Uncharacterized protein n=6 Tax=Daphnia TaxID=6668... [more]
A0A250WZI2_9CHLO5.630e-3974.44Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A482UF37_9ARCH2.150e-3865.05DEAD/DEAH box helicase (Fragment) n=1 Tax=archaeon... [more]
A0A7S3UTV5_HETAK2.860e-3862.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0PBS9_CAFRO3.560e-3863.30Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8696contigA-nodosum_M_contig8696:22354..23607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN81
PFAMsDEAD,Helicase_C,Sec63
Model size449
Max annot lvl2759|Eukaryota
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.99e-52
EggNOG OGsCOG1204@1|root,KOG0952@2759|Eukaryota
EC3.6.4.12,3.6.4.13
Descriptionhelicase activity
Cds size381
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870260.5806031-UTR-A-nodosum_M_contig8696:22353..224181680870260.5806031-UTR-A-nodosum_M_contig8696:22353..22418Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8696 22354..22418 -
1680870261.3449106-UTR-A-nodosum_M_contig8696:23604..236071680870261.3449106-UTR-A-nodosum_M_contig8696:23604..23607Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8696 23605..23607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870261.3154192-CDS-A-nodosum_M_contig8696:22418..225181680870261.3154192-CDS-A-nodosum_M_contig8696:22418..22518Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8696 22419..22518 -
1680870261.3331234-CDS-A-nodosum_M_contig8696:23323..236041680870261.3331234-CDS-A-nodosum_M_contig8696:23323..23604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8696 23324..23604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8696.1.1prot_A-nodosum_M_contig8696.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8696 22419..23604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8696.1.1

>prot_A-nodosum_M_contig8696.1.1 ID=prot_A-nodosum_M_contig8696.1.1|Name=mRNA_A-nodosum_M_contig8696.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
MIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESQLPGALHNHL
SAECAGGAIRCRRDAVDYLTWTFYFVRLLANPSYYGLEEVPPMGVSHFAF
PLYSLSLSPAPSLFVCKNERKYGRPR*
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mRNA from alignment at A-nodosum_M_contig8696:22354..23607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8696.1.1 ID=mRNA_A-nodosum_M_contig8696.1.1|Name=mRNA_A-nodosum_M_contig8696.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1254bp|location=Sequence derived from alignment at A-nodosum_M_contig8696:22354..23607- (Ascophyllum nodosum dioecious)
CAGATGATAGGGCGTGCGGGTCGGCCGCAGTTCGACGATCACGCCGTGGC CTGCATCCTCGTTCACGAGCCCAAGAAAAACTTCTACAAGAAATTTCTGT ACGAGCCGTTCCCCGTCGAGTCCCAACTCCCCGGGGCGCTGCACAACCAC CTGAGCGCCGAGTGCGCCGGCGGAGCGATTCGCTGTCGGAGGGACGCGGT GGATTACCTGACGTGGACGTTTTACTTTGTGCGGCTGCTAGCAAATCCTT CATACTACGGCCTCGAGGAGGTTCCACCGATGGGGTGCAGGTGATTCAAT ACACTAATTAATACAGTAATACACATACAGGGTGTCGTCACGGCGAAAAG AGCACGTGGACCCCTGGTTGTTAAGCGCACCGTGCAACCTCCACACTTTG TATAGTGGAATTGTTTTTCTACTATTTATAGTATTAATAGTATTTTAATG CTTACTGGTAGTGTTTATTATAGTAGGATATTGTCGAATAATTATTATCA AGCTGGGACGTTCGCGTTACAAGCCTTCTGTGGATTCAGTCCCCTTGATC TCTAGTTTCGAGGTTTCGTATTATAATAGGGGCTTGAAAATTCTCCGCGA TTTCAAACTAACCATGGTTTGTAGACATGGTATTTTTACAAACCGTGCTG AGCTCTACGGTCGTTGATTCAACGGTGCAACGACTGTGCACGCCTCCGGC AGGCGCATCTTCTAGGTCTGGTAGATGCCTGTCTGGGAGACCTGGCAGAC GCCGGGTGCATCGAGCTCGGCGGCGAGGAAAGGAGGGACGAAAGTAAAGC CATCCGGCGCCGCCGACATGGCCAGTTCTGTAACAGATTTTTGCGCAGGA TTTATCCAGGAAGAGAGTAAGACAATCGGTTTTGTGCAGTTCGAAAGGCG TTCTTCCCTCGTTTGTTTCTTTTTCGTCTTGTAGTACAATTAATATAGTA ACCATAATAACACTACAGTACATTTATATTATAATATCAGTGACAACTCC TATGCGTTTTACAGACGTTTCTCAAACGGGCGCGATCGGAGTCTTTTAGA GTGTACAGCACAGATTACCGTTGCACCTTTAGACCCAAGGGTGAGTCACT TTGCATTCCCTTTGTACTCTCTCTCTCTCTCTCCCGCTCCCTCTCTATTT GTATGTAAAAATGAAAGGAAATACGGGCGACCCCGCTAGCAATGGTCGCC AGCCGTTACTATCTGGACTACCGCACGATGAAGCTCTTCCGAGATTTCTT CGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8696:22354..23607-

>mRNA_A-nodosum_M_contig8696.1.1 ID=mRNA_A-nodosum_M_contig8696.1.1|Name=mRNA_A-nodosum_M_contig8696.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig8696:22354..23607- (Ascophyllum nodosum dioecious)
ATGATAGGGCGTGCGGGTCGGCCGCAGTTCGACGATCACGCCGTGGCCTG
CATCCTCGTTCACGAGCCCAAGAAAAACTTCTACAAGAAATTTCTGTACG
AGCCGTTCCCCGTCGAGTCCCAACTCCCCGGGGCGCTGCACAACCACCTG
AGCGCCGAGTGCGCCGGCGGAGCGATTCGCTGTCGGAGGGACGCGGTGGA
TTACCTGACGTGGACGTTTTACTTTGTGCGGCTGCTAGCAAATCCTTCAT
ACTACGGCCTCGAGGAGGTTCCACCGATGGGGGTGAGTCACTTTGCATTC
CCTTTGTACTCTCTCTCTCTCTCTCCCGCTCCCTCTCTATTTGTATGTAA
AAATGAAAGGAAATACGGGCGACCCCGCTAG
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