mRNA_A-nodosum_M_contig8649.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8649.6.1
Unique NamemRNA_A-nodosum_M_contig8649.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 8.960e-96
Identity = 149/203 (73.40%), Postives = 165/203 (81.28%), Query Frame = 1
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTV-------------GDGVRLKWNADNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNTAGRIGSRTGISVGNPHVV 570
            ENHDGTDK+Y+VLGM DG HLCSCRTLQELGLCCRHFWAAMRLSR+YKFHVGILNQHWLAEQGRKPTSEWPEGAKP W VA NH  L+E E QA LV+T              G G  ++W+A N TIESSL++LKET PTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALV+QF QGV+ A RIGS  G++V NP VV
Sbjct:  638 ENHDGTDKRYIVLGMTDGSHLCSCRTLQELGLCCRHFWAAMRLSRRYKFHVGILNQHWLAEQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVV 840          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.930e-48
Identity = 90/143 (62.94%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  181 EQGRKPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTV-------------GDGVRLKWNADNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNTAGRIGSRTGISVGNPHVV 570
            ++GR+ T+EWPEGAKP W V KNH  L+E E QA LV+T              G G  ++W+A N TIESSL++LKET PTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALVQQF QGV+ A RIGS  G++V NP VV
Sbjct:  253 QRGRRATTEWPEGAKPKWAVTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVV 395          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.200e-37
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTVGDGVRLKWNA--DNTTIESSLMKLKETEPTPQDRRYLYVDCLKEAT 432
            E+  G   +Y+V  M+DG H+CSCRTLQELGLCCRHFW AMRLS K+KFHVGILN+HWL EQG +    WP   K  W VA  ++  ++D+      + VGD     W A  +N TIE+ L ++ +T  + QDRR L+V+ LK+ T
Sbjct:  354 ESRYGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTEQGLRELEAWPPECKQ-WMVALVNSDASKDDQVRPPTAMVGD----TWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.040e-36
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 1
Query:  301 GDGVRLKWNADNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNTAGRIGSRTGISVGNPHVV 570
            G G  ++W+A N TIESSL++LKET PTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALV+QF QGV+ A RIGS  G++V NP VV
Sbjct:    6 GAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVV 95          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.300e-33
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1
Query:  301 GDGVRLKWNADNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQ-GVNTAGRIGSRTGISVGNPHVV 570
            G G  ++W+A N TIESSL++LKET PTPQDRR+LYVDCLKEATAAV LGVETVPP+ALRALV+QF Q GV+ A RIGS  G++V NP VV
Sbjct:  105 GAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVV 195          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: D8LU83_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU83_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 6.490e-29
Identity = 63/149 (42.28%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTVGDGV---RLKWNA---DNTTIESSLMKLKETEPTPQDRRYLYVDCLKE 426
            E  D     Y+VL   DG HLC CRTLQ L L CRH WAAM  S +++FHVG+L++HWL E+ R  P  +WP+ A+P W V+  H      EV        G+GV     +W +    + T+++ L+ LKE  PT QDR+ LY D  K+
Sbjct:  497 EQRDDKAFDYLVLLFSDGSHLCQCRTLQTLRLFCRHVWAAMMYSPRFRFHVGLLHEHWLTEKARGTPQQDWPDVARPRWVVSNRHA---AREVDGAAGEGEGEGVGGCSGRWKSFVGSSQTVQTVLLDLKEKGPTDQDRQVLYADVTKK 642          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.070e-28
Identity = 74/188 (39.36%), Postives = 100/188 (53.19%), Query Frame = 1
Query:    1 ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTVGDGVRL---KWNA---DNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNT-AGRIGSRT 540
            E  DG    Y+VL   DG HLC CRTLQ LGL CRH WAAM  S +++FH      HWL E+ R  P  +WP+ A+P W V+ ++      EV        G+GV     +W +    + T+++ L+ LKE  PT QDR+ LY D  K+   A  +  +   P    ALV QF+  VN  AG +G+ T
Sbjct:  596 EQRDGKAFDYLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAMMHSPRFRFH------HWLTEKARGTPQQDWPDVARPRWVVSXSNRHAA-GEVDGAAGEGEGEGVGGCGGRWKSFVGSSQTVQTVLLDLKEKGPTYQDRKVLYADVTKKLGQAASILSDRFSPTVAVALVDQFLTMVNMQAGGVGTTT 776          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JFD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.650e-25
Identity = 65/177 (36.72%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   16 TDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTVGDGVRLKWNADNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNT-AGRIGSRT 540
            T   Y+VL   D  HLC CRTLQ LGL CR  WAAM  S +++FHVG+L++HWL E+ R  P  +WP+ A+P W           D          G G        + T+++ ++ LKE  PT QDR+ +Y +  K+   A  +  +   P    A V QF+  VN  AG  G+ T
Sbjct:  296 TTFDYLVLLFSDVSHLCQCRTLQTLGLFCRQVWAAMMHSPRFRFHVGLLHEHWLTEKARGTPLHDWPDVARPRWEKWTGRRERERD----------GGG-----GXSSQTVQTVVLDLKEKGPTDQDRQVVYANVTKKLGQAASILSDKFSPTVAVARVDQFLATVNVQAGGAGATT 457          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.490e-24
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   10 DGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTVGDGVRLKWNA-----------------DNTTIESSLMKLKETEPTPQDRRYLYVDCLKE 426
            DG    Y+VL   DG HLC CRT Q LGL CRH WAAM  S +++FHVG+L+QHWL E+ R  P  +WP+ A+P + V  +    T    +       G+                          + T++++L+ LKE EPT Q+R+ LY D  K+
Sbjct:  567 DGRTFDYLVLLFSDGSHLCQCRTFQTLGLFCRHVWAAMMYSPRFRFHVGLLHQHWLTEKARGTPLQDWPDVARPRFVVISDRHASTAGAKERF-EGAAGEXXXXXXXXXXXXXXXXXXXXXXXXXSSQTVQAALLDLKEKEPTDQERQVLYADVTKK 722          
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.260e-24
Identity = 60/141 (42.55%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  154 GILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTVGDGVRLKWNA--DNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLGVETVPPDALRALVQQFVQGVNTAGRIGSRTGISVGNPHVV 570
            G + +HWL EQG +    WP   KP W VA  H+  ++D+        VGD     W A  ++ TIE+ L ++ +T  + QDRR LYV+ LK+ATAAV  GV+ VPPD +RA+VQ F   +N A  I S  G  +GNP  V
Sbjct:  412 GRVMRHWLTEQGLRELEAWPPECKPQWMVALVHSDASKDDQVRPPTVVVGD----TWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAV 548          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8649.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE8.960e-9673.40SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI1.930e-4862.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBU5_9PHAE1.200e-3749.32SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JCK5_9PHAE3.040e-3672.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMX3_9PHAE3.300e-3371.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU83_ECTSI6.490e-2942.28SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUZ2_9PHAE1.070e-2839.36SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFD7_9PHAE2.650e-2536.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNB0_9PHAE1.490e-2436.94SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWW3_9PHAE2.260e-2442.55MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8649contigA-nodosum_M_contig8649:12613..13182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size570
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue1.06e-29
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size570
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870254.0066516-CDS-A-nodosum_M_contig8649:12612..131821680870254.0066516-CDS-A-nodosum_M_contig8649:12612..13182Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8649 12613..13182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8649.6.1prot_A-nodosum_M_contig8649.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8649 12613..13182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8649.6.1

>prot_A-nodosum_M_contig8649.6.1 ID=prot_A-nodosum_M_contig8649.6.1|Name=mRNA_A-nodosum_M_contig8649.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=190bp
ENHDGTDKQYVVLGMKDGGHLCSCRTLQELGLCCRHFWAAMRLSRKYKFH
VGILNQHWLAEQGRKPTSEWPEGAKPIWTVAKNHTPLTEDEVQALLVSTV
GDGVRLKWNADNTTIESSLMKLKETEPTPQDRRYLYVDCLKEATAAVGLG
VETVPPDALRALVQQFVQGVNTAGRIGSRTGISVGNPHVV
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mRNA from alignment at A-nodosum_M_contig8649:12613..13182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8649.6.1 ID=mRNA_A-nodosum_M_contig8649.6.1|Name=mRNA_A-nodosum_M_contig8649.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at A-nodosum_M_contig8649:12613..13182- (Ascophyllum nodosum dioecious)
GAAAACCACGACGGCACAGACAAACAATACGTAGTCCTTGGCATGAAGGA TGGTGGTCATCTCTGCTCGTGTCGCACTCTGCAAGAACTAGGCCTTTGCT GCCGGCACTTTTGGGCGGCGATGCGCCTTAGCCGCAAGTACAAGTTCCAC GTTGGCATTTTGAACCAGCACTGGCTGGCAGAGCAGGGGCGGAAACCCAC GAGTGAGTGGCCAGAGGGGGCCAAGCCCATTTGGACTGTAGCGAAGAACC ACACCCCCTTAACTGAGGACGAAGTACAGGCCCTGCTGGTTTCGACCGTG GGCGATGGGGTAAGGTTGAAGTGGAATGCTGATAACACTACCATTGAGTC CTCTCTAATGAAGTTGAAGGAGACAGAGCCAACCCCCCAGGACCGCCGGT ACCTGTACGTAGACTGCCTGAAGGAGGCCACCGCAGCTGTGGGTTTAGGT GTAGAGACTGTACCTCCCGACGCGCTACGGGCGCTAGTACAACAATTCGT GCAAGGGGTGAACACGGCGGGGAGGATAGGGTCGAGGACAGGGATTTCGG TGGGAAATCCGCATGTAGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8649:12613..13182-

>mRNA_A-nodosum_M_contig8649.6.1 ID=mRNA_A-nodosum_M_contig8649.6.1|Name=mRNA_A-nodosum_M_contig8649.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at A-nodosum_M_contig8649:12613..13182- (Ascophyllum nodosum dioecious)
GAAAACCACGACGGCACAGACAAACAATACGTAGTCCTTGGCATGAAGGA
TGGTGGTCATCTCTGCTCGTGTCGCACTCTGCAAGAACTAGGCCTTTGCT
GCCGGCACTTTTGGGCGGCGATGCGCCTTAGCCGCAAGTACAAGTTCCAC
GTTGGCATTTTGAACCAGCACTGGCTGGCAGAGCAGGGGCGGAAACCCAC
GAGTGAGTGGCCAGAGGGGGCCAAGCCCATTTGGACTGTAGCGAAGAACC
ACACCCCCTTAACTGAGGACGAAGTACAGGCCCTGCTGGTTTCGACCGTG
GGCGATGGGGTAAGGTTGAAGTGGAATGCTGATAACACTACCATTGAGTC
CTCTCTAATGAAGTTGAAGGAGACAGAGCCAACCCCCCAGGACCGCCGGT
ACCTGTACGTAGACTGCCTGAAGGAGGCCACCGCAGCTGTGGGTTTAGGT
GTAGAGACTGTACCTCCCGACGCGCTACGGGCGCTAGTACAACAATTCGT
GCAAGGGGTGAACACGGCGGGGAGGATAGGGTCGAGGACAGGGATTTCGG
TGGGAAATCCGCATGTAGTC
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