mRNA_A-nodosum_M_contig8550.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8550.1.1
Unique NamemRNA_A-nodosum_M_contig8550.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8550.1.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.010e-50
Identity = 127/247 (51.42%), Postives = 150/247 (60.73%), Query Frame = 3 
Query:  399 ILGATFHGSNDSSRPSRFLDQDGDGYADDDYDDESYVDGESATTGSGRGGSRGMDLGPSGTPVGTMAQSGLPVLKEGEEFSANSDGDGVSGPAAGTGQEEGAEHHAIDDGITSAHGSSVSAQFTTRASSSLQRQYFGPGPKVFPDTVFLFLVLSQWFLAAWSVVGAVLYFRLFGQGRTCSTLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGSPFKIGRNK-GSRRREGGGFHGDLSADSNSSDVG 1136
            +LGATFHG  D +RPSRFLD D  G  DD  +    V   SA  G+G G +   ++GP  T          P  K   E      G  V+G     G+E        D+ I S   S++S +   + SSSLQ +YFGPGPKVFPDT+F  LV+SQWFLA WSVVGA LYFRLF   R CS LLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLG+PF   R + GS  R+   FH DL + S+S+  G
Sbjct:    1 MLGATFHGRGDGTRPSRFLDDDAWGVDDDSIN----VSVSSAAGGTG-GRASPPEMGPEHTNGNGSDIRITPPFKM--EEGGGDGGKRVNGXXMAGGEER--RDSMGDESIVSGVPSTISHRLAAQ-SSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRSRGRNGSGERDQ--FHADLPSSSDSTSTG 235
[Close]
BLAST of mRNA_A-nodosum_M_contig8550.1.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 6.170e-48
Identity = 120/229 (52.40%), Postives = 144/229 (62.88%), Query Frame = 3 
Query:  333 QECDGWLRSWLLIAVCVTGVCGILGATFHGSNDSSRPSRFLDQDGDGYADDDYDDESYVDGESATTGSGRGGSRGMDLGPSGTPVGTMAQSGLPVLKEGE-EFSANSDGDGVSGPAAGTGQEEGAEHHAIDDGITSAHGSSVSAQFTTRASSSLQRQYFGPGPKVFPDTVFLFLVLSQWFLAAWSVVGAVLYFRLFGQGRTCSTLLRHWTLLVVIIGFLSCLLAVCYSG 1016
            +ECDG LR+WLL  VCVT +C  LGA FHG  + +RPSRFLD D D +  DD  D   V   SA  G+G G +   ++GP     G   +S + +    + E    S G GV+G     G+E        D+ I S   S++S +   + SSSLQ +YFGPGPKVFPDT+F  LV+SQWFLA WSVVGA LYFRLF   RTCS LLRHWTLLVVIIGFLSCLLAVC  G
Sbjct:   33 KECDGGLRTWLLTTVCVTAICSGLGAIFHGRGNGTRPSRFLDDD-DAWGVDD--DSINVSVSSAAGGTG-GRASPPEMGPEDAN-GNGKRSDIRITPPFKMEEGGGSGGKGVNGGGMAGGEER--RDSMGDESIVSGVPSTISHRLAAQ-SSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCSWG 253
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8550.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0Y0_9PHAE1.010e-5051.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV38_ECTSI6.170e-4852.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8550contigA-nodosum_M_contig8550:13599..18353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3390
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005050.1
Cds size606
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8550.1.1prot_A-nodosum_M_contig8550.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8550 15826..17796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870240.111438-UTR-A-nodosum_M_contig8550:13598..158251680870240.111438-UTR-A-nodosum_M_contig8550:13598..15825Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8550 13599..15825 -
1680870240.1974144-UTR-A-nodosum_M_contig8550:17796..183531680870240.1974144-UTR-A-nodosum_M_contig8550:17796..18353Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8550 17797..18353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870240.1259449-CDS-A-nodosum_M_contig8550:15825..159801680870240.1259449-CDS-A-nodosum_M_contig8550:15825..15980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8550 15826..15980 -
1680870240.1444325-CDS-A-nodosum_M_contig8550:16236..163051680870240.1444325-CDS-A-nodosum_M_contig8550:16236..16305Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8550 16237..16305 -
1680870240.1585686-CDS-A-nodosum_M_contig8550:16656..167741680870240.1585686-CDS-A-nodosum_M_contig8550:16656..16774Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8550 16657..16774 -
1680870240.1722116-CDS-A-nodosum_M_contig8550:17151..172361680870240.1722116-CDS-A-nodosum_M_contig8550:17151..17236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8550 17152..17236 -
1680870240.1845405-CDS-A-nodosum_M_contig8550:17617..177961680870240.1845405-CDS-A-nodosum_M_contig8550:17617..17796Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8550 17618..17796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8550.1.1

>prot_A-nodosum_M_contig8550.1.1 ID=prot_A-nodosum_M_contig8550.1.1|Name=mRNA_A-nodosum_M_contig8550.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=202bp
MDLGPSGTPVGTMAQSGLPVLKEGEEFSANSDGDGVSGPAAGTGQEEGAE
HHAIDDGITSAHGSSVSAQFTTRASSSLQRQYFGPGPKVFPDTVFLFLVL
SQWFLAAWSVVGAVLYFRLFGQGRTCSTLLRHWTLLVVIIGFLSCLLAVC
YSGIMCCMLGSPFKIGRNKGSRRREGGGFHGDLSADSNSSDVGVVDPAGM
I*
back to top

mRNA from alignment at A-nodosum_M_contig8550:13599..18353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8550.1.1 ID=mRNA_A-nodosum_M_contig8550.1.1|Name=mRNA_A-nodosum_M_contig8550.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4755bp|location=Sequence derived from alignment at A-nodosum_M_contig8550:13599..18353- (Ascophyllum nodosum dioecious)
GCTATGTGCAATTTAATAAATACACACACACACACACACACACACATGTC
TCGTCAGAGGTTTTCGTGGCAACAATTACTCATCCCCACCTATTGGGGTA
CAATGAAGTACGAGTAGCTCAGAAAACTGGTTGTCATAGCACGATAGGGC
TCACCGAATTGCGCGGTTGTGTGCAATTCAATGAGTACGGACATACGGTG
ACATAGGCACGATTTCAACCTAAAACAGAGTAGCCAGTTAATTGTTTGTA
CTTTCGAAAGTACGGCGGTTCCATATGTCGATATCGTTACGCTTGGAGAG
CATGCATTAAATATTTGTAACGATCTCTCCAACAGGAATGCGACGGGTGG
CTGAGGAGCTGGCTACTCATCGCAGTGTGCGTAACGGGCGTGTGTGGCAT
CCTCGGCGCCACGTTCCACGGCAGCAACGACAGCAGCCGACCGTCGCGCT
TCCTCGACCAAGACGGTGATGGCTACGCCGACGACGACTATGACGACGAG
AGCTACGTCGACGGCGAAAGTGCGACCACCGGGAGCGGCCGCGGCGGATC
GAGGGGGATGGACCTTGGCCCTTCGGGTACCCCGGTCGGGACGATGGCAC
AGAGCGGTTTGCCAGTTCTGAAAGAGGGGGAGGAGTTCTCTGCGAATAGT
GACGGCGATGGCGTTAGCGGGCCAGCGGCAGGGACGGGGCAAGAGGAGGG
CGCCGAGCACCACGCTATCGACGATGGGATTACATCGTGAGCTAAACTCG
TACGTGGTTGCTTTCGTTGGAAACGAGCGGTTTTGCGTGAATGCTGCAGC
GACGTCAGGGAAGAGTCGGAGATACTGTAACACGTCTGGAGGATACGTTT
CCATCTGGTCTTCATGTTTTTGTTTAGGCGGGGGGGCGGGGTGCATTTTA
GACAGACACAGGGTCACACTCCACGTCTTACAATCTAGGCCCTTCTCAAA
GAAGAAGGCGCTCCGCGGAATTGCTGTTCTTCGCGAAAACGTAGACAGGG
TGGTCAAGTCTCCGAGAAGGCGTGAGCTTTATCCAATATTGTAGTCGCTC
ACTTCTGTTGGCTAAATTATGGTTTTGGTGCTTTTCCCGTACGACTGCCT
TTTTCCCTCTAAACAAGGGCGCATGGAAGCAGCGTCTCGGCTCAGTTCAC
GACCCGTGCGTCGTCGTCCTTACAGCGGCAATACTTCGGCCCGGGCCCTA
AGGTACGTCAGAGCAAGCGAGGGAGGGAAACGGGGGTTTGGACAGTGGTG
AATCGTCGCTGCAGGTTGTGAGCGTGTTTTTGGAAAACCTTGTCAACATT
GGGAAGATATTGCTGCCTCGGATCCTGGTCGACACCAGACAGGCGGGGAG
CAAGCTGGCGGACATACCGTTGGAGCGTGGTTCACGTCGAGGTTGCCTCG
TGACGGCTCGCTTTTTTTTATCTTTTCCGAGTCGATGCTGTCCACCGAAA
CCTATCTGAGCTGATGCTGTCCGATGAAAACCATCTGAGCGTGTGTCTGC
TGGCTCGCCCGGCGGCCCCTCGTGACGAGACGAAAGCGAATTAATCCCGC
GCCACGATTTTACCATTCCGCTGCTTCAGGTGTTCCCGGATACTGTTTTT
CTGTTTCTGGTGCTGAGCCAATGGTTCCTAGCGGCTTGGAGCGTGGTCGG
GGCGGTTTTATACTTCAGACTTTTCGGGCAAGGCAGGACATGCTCTAGTG
AGTGCCACTCCAAAACGGAGCTGTGTTCTAAGGAATCCCCCTGCTCCCCC
GGCCCGCCCCGGAGTCATCTCTTGCGGCGTTGACTATATTGCCGTGGCTG
CTGTCCCGTACTTAATTGGTACACGTACGTGTGCACCCTTTTCCCCTTGT
GGCTCATTCCGTCGCCGCTTGCGCGCGCGCGCGATTAAAACCCACCCGAT
CCAGCCAGCATGCGCGGGAGAACGCCACCCGCCTGGCCTCGTACTCTCAA
TAGCCTAACGGGTTATCACCCGTCTATCTTTTTAATTGGTCGTCCCATCG
CGTTTATTTACCTTCTCGCCTCCTTGTGCGCGCCCTGCTCCTCTCCAGCC
TTGTTGCGGCACTGGACGTTGCTGGTGGTGATCATCGGATTTTTGTCGTG
CTTGCTGGCCGTGTGTTGTGAGTGAAGCGGCCCCGGCGTCTCGTCGGAGC
GCAGACTTTGTTTCTCCCGCGCGCAGTTTTGTCTTCCGTCGGGAACGTTT
CCAGATTGCTCTAGGGTTGTACTGCATCTAGTATACGGTAGACAAGAACA
CGGAAATGTAAAATAATCTTCACAAGGCTGTATTCGTGGGATTTCGATCG
AATGTATCCGGAGGTCGCACCGCTGTCCTTGGAGGGGGGCTTTGATACAC
GCCGGCGTGTTTGACTTTCGCAGATTCTGGGATCATGTGCTGCATGCTCG
GGAGTCCGTTCAAGATCGGCCGGAACAAAGGCAGCAGAAGAAGGGAGGGG
GGGGGGTTCCATGGCGACCTATCGGCCGACAGCAACAGCAGCGATGTGGG
CGTTGTCGACCCGGCTGGTATGATTTGACGTTTGAACTTGCCGCGTAATA
CAGCAGTAGCGCGTGTCTCCATCAGGCGAACCTTGACCTTGACAATTGAC
AGTACCTTTTCCGGGAGAGTAGAGCCTTGGCGTTACTGCCCCCCCCCCGT
TGGCGATTCAGGGTGCTGCATTGTGATGTACTCGAGAAAATTTGGGTTGT
TTTTCGAGAGTTGAGAAAAAAACAGAGGGCCTCGTTTGACTAATGACAAT
GATTTTGGGCCGGGTCGGGCATCGTTTCAGTGGTTCGTACACGTTATTAT
TAATAAAACTTTGTCTGTGGCAACCTACCGGGTATGGCACGCGATTCCTC
GCCACCTCTTAGGTAAAACATATATCTTTCTTGGGAACACATCGTGTATA
CAGTATATACTGTACTGGTCTAATATAAGATGAGAACAACGTGGCTTCTA
TAGGTGACATTTTGTTGTTGTGTACCGTAGTACTGTTGTTATAGTGCACA
TCTCGGGCACAAGACATGTCAAGCGGCCGACTTGGAAAATTGTTGTACTG
TCTGTACTGTTAAATGTTCTCTATATCGTATATAAATGGTAATCTTGAGG
ATGTAAAAGGGATATATGTTGTCGGCACGACCCGAGAGCGTTTTGAGTGG
CCCGCGTTATCTACTTGCAACATCAGAGAAAGAGAGATATTTACTACAAT
CAAGCATCGGGCGTGAAGAGTGAGTTAAGGGTCGGTTAGGTTTCACGACA
CGTGACAGCCGTCGCCTATTATGATTTGGTAGCGTGTAGCTATGCTTGAG
CTGTACGCCTTGCACTACCGTCGAGGCGTATGGTATAATCTCTCGTTCAT
GAGATATGGCTTCCTGTGTCTGGAGTTTGGGTCTATACTTCAGAATTGTG
CTACTTTATATAGGTTCCGGTACCATGGACATGACTGGCGGGGTCAAACA
TTTCGTCATGAGACTCGCGACGTGAGCTCATGGCATTTGACCGACAGGCC
TTTTGGGACATCCTTTCAACTGATCCGACTCCCCCTCCCCTGACTTACAC
GCTCTACCGCTATGACCAACATAGCGTGTGATCGCATCTGCCCAGGCAAC
GCCCATGATACAGTGGATGAAACCTCACCCACCCATAGTACCATAGACAC
CCTGCCGTTATACGCTCTGACCGTAACACCCCCCCAACTTGACATCCGCA
AGGATGGCACGGACGAGGCGTCAAGCGTCATCCTTTGGAGGGGAAACCTT
AAGAGGGGAGATACCTCTCAGGAAAAACCTTGCGGGGTGGTTGCTCTTTG
TTGAAATAAAATTCAGGTTAAACATCCTGAAGATCCATTCCACCAATTCC
TGTATGTTCAGTCCTTAACTCAGGGTGAGCAGTAAGGTAAGTCTGCTGCG
GGGATGACCGTAACAGGCGGTCGATCTCCTAGATAAGAACAATAGTACTG
ATGCGACAGCGTGACTTTGGAGGAACGTCAGGTTCTAGAGGGTTGAGTCA
GGGAGAACTGTGGCAGTTGCGACAAACCGGCAGGGCAGGGTCGTCTTCGA
CTAGACGGAAAAACAGGAGCTGAAAATATCCATGCCAGAGTAGCGGTATA
AAGCGTACCAATCGCAAGAGTTGGCAATCCTACGTCATAGCATAGAGAGA
TGCTAATGAGTAACACATAGGGGTACAAGGATAGAATCATGGATTTTATT
GTCTTGATCGGTGAACCTTGATTCTTCTTGCTTGTTTTATTTTGCTTGGC
GTCGCGTGTCGAGTGGGAGCGATGGGCTTTATCTATCTCCTTTGTCTGAC
ATGTCGCCTGCGACGTCTGACTGTCTGGAGTCTTATTTTTTTCCTTTTTT
TTTCCTACTATCGCGTGTGTGTGTTGACTTTTCTGGGTCCTTTTATTTCT
CTTTTGTTTTTCATAATATGTACCCTTTTGGGTAGTTAGCCTGTGACCAC
GGAAGGCGTTCGCGTCAGTTAAACCAGTACGGATGTTAAGAAGGTACTGT
GTAGAGATCGGAACGGTTTTTAATGTGAAGAGTGGTTTTGGTGTCCCTGC
ATGGAGATTAATGTAAGTGTACAGTATAACGGAGGGCTTCTCCCCGATAT
TATACTGTTGACCCGATGCAGTTACATTGGGGAACCCTTTTGATACCATG
AAGAGGTTTTGTCTCTACAGCCAATGTTCCCACCTAAACCTTTAGACACT
CTTCCACTTGAGGTGGATGCTCAGAAGGTTTAGATGCGTTCAGATTTTTC
TAAAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8550:13599..18353-

>mRNA_A-nodosum_M_contig8550.1.1 ID=mRNA_A-nodosum_M_contig8550.1.1|Name=mRNA_A-nodosum_M_contig8550.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at A-nodosum_M_contig8550:13599..18353- (Ascophyllum nodosum dioecious)
ATGGACCTTGGCCCTTCGGGTACCCCGGTCGGGACGATGGCACAGAGCGG
TTTGCCAGTTCTGAAAGAGGGGGAGGAGTTCTCTGCGAATAGTGACGGCG
ATGGCGTTAGCGGGCCAGCGGCAGGGACGGGGCAAGAGGAGGGCGCCGAG
CACCACGCTATCGACGATGGGATTACATCGGCGCATGGAAGCAGCGTCTC
GGCTCAGTTCACGACCCGTGCGTCGTCGTCCTTACAGCGGCAATACTTCG
GCCCGGGCCCTAAGGTGTTCCCGGATACTGTTTTTCTGTTTCTGGTGCTG
AGCCAATGGTTCCTAGCGGCTTGGAGCGTGGTCGGGGCGGTTTTATACTT
CAGACTTTTCGGGCAAGGCAGGACATGCTCTACCTTGTTGCGGCACTGGA
CGTTGCTGGTGGTGATCATCGGATTTTTGTCGTGCTTGCTGGCCGTGTGT
TATTCTGGGATCATGTGCTGCATGCTCGGGAGTCCGTTCAAGATCGGCCG
GAACAAAGGCAGCAGAAGAAGGGAGGGGGGGGGGTTCCATGGCGACCTAT
CGGCCGACAGCAACAGCAGCGATGTGGGCGTTGTCGACCCGGCTGGTATG
ATTTGA
back to top