mRNA_A-nodosum_M_contig854.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig854.5.1
Unique NamemRNA_A-nodosum_M_contig854.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.910e-20
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:   49 AYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 134
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.590e-19
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A ++EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:  218 AYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 303
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.210e-18
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V ++ +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:   49 AYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 134
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.390e-18
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPC+FRKVVDGE   ++V++VDDIL
Sbjct:  132 AYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDIL 217
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.190e-18
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:  400 AYIHAKLKEEIYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 485
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.210e-18
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:  574 AYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 659
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.440e-18
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:  616 AYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 701
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5KKQ0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.050e-18
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A+  A + E+IY+ +P+    + G   +V +A+YGL Q+GR W  +  D + + G+EQ +VDPC+FRKVVDGE   ++V++VDDI+
Sbjct:   20 AYTHAKLKEDIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGELVGLIVINVDDIM 105
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.980e-18
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDI+
Sbjct:  329 AYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDII 414
[Close]
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.060e-18
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL 258
            A++ A + EEIY+  PE      G V +V +A+YGL Q+GR W  +  D +   G+EQ +VDPCVFRKVVDGE   ++V++VDDIL
Sbjct:  475 AYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDIL 560
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig854.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC05_9PHAE3.910e-2048.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY81_9PHAE9.590e-1948.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE2.210e-1847.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE2.390e-1847.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEM4_9PHAE3.190e-1848.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE3.210e-1848.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE4.440e-1848.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKQ0_9PHAE5.050e-1843.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE5.980e-1847.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE6.060e-1848.84Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig854contigA-nodosum_M_contig854:80040..80297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI35092-PA
Model size258
Max annot lvl7029.ACYPI35092-PA|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.72e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38VJ1@33154|Opisthokonta,3CB3U@33208|Metazoa,3DT1J@33213|Bilateria,4294G@6656|Arthropoda,3SW1M@50557|Insecta,3EE1Z@33342|Paraneoptera
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size258
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870234.8311605-CDS-A-nodosum_M_contig854:80039..802971680870234.8311605-CDS-A-nodosum_M_contig854:80039..80297Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig854 80040..80297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig854.5.1prot_A-nodosum_M_contig854.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig854 80040..80297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig854.5.1

>prot_A-nodosum_M_contig854.5.1 ID=prot_A-nodosum_M_contig854.5.1|Name=mRNA_A-nodosum_M_contig854.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
AFLKADIDEEIYIEIPEEFQKFPGAVGRVNKAIYGLVQAGRCWNNKFCDD
MTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDIL
back to top

mRNA from alignment at A-nodosum_M_contig854:80040..80297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig854.5.1 ID=mRNA_A-nodosum_M_contig854.5.1|Name=mRNA_A-nodosum_M_contig854.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig854:80040..80297- (Ascophyllum nodosum dioecious)
GCGTTTTTGAAGGCGGATATTGACGAGGAGATATACATAGAGATCCCCGA
AGAGTTCCAGAAGTTTCCGGGGGCAGTGGGACGGGTTAATAAGGCCATTT
ACGGACTCGTGCAGGCGGGTAGGTGCTGGAATAATAAGTTCTGTGATGAC
ATGACAGCGATTGGATTCGAGCAGGCAAAGGTGGACCCGTGCGTGTTCCG
CAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGGTCGTGCACGTAGACG
ACATCCTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig854:80040..80297-

>mRNA_A-nodosum_M_contig854.5.1 ID=mRNA_A-nodosum_M_contig854.5.1|Name=mRNA_A-nodosum_M_contig854.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig854:80040..80297- (Ascophyllum nodosum dioecious)
GCGTTTTTGAAGGCGGATATTGACGAGGAGATATACATAGAGATCCCCGA
AGAGTTCCAGAAGTTTCCGGGGGCAGTGGGACGGGTTAATAAGGCCATTT
ACGGACTCGTGCAGGCGGGTAGGTGCTGGAATAATAAGTTCTGTGATGAC
ATGACAGCGATTGGATTCGAGCAGGCAAAGGTGGACCCGTGCGTGTTCCG
CAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGGTCGTGCACGTAGACG
ACATCCTT
back to top