mRNA_A-nodosum_M_contig8518.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8518.1.1
Unique NamemRNA_A-nodosum_M_contig8518.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.070e-14
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 NQVALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
            ++VALKHLME VVPILTALKHVLERAHSP+LRE+MSYFGE+ R
Sbjct: 1367 SKVALKHLMEKVVPILTALKHVLERAHSPLLREIMSYFGELFR 1409
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.810e-13
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    7 VALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
            VALKHLME VVPILTALKHVLER+HSP+LRE+M YFGE+ R
Sbjct:  515 VALKHLMEKVVPILTALKHVLERSHSPLLREIMFYFGELFR 555
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: W7TNH2_9STRA (Condensin-2 complex subunit d3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNH2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.460e-6
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 NQVALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
            ++V+ KHL+E VVP L +LK  LERAHSP++R +M YF E++R
Sbjct: 1048 SKVSRKHLLEHVVPELVSLKACLERAHSPLIRNVMEYFLELMR 1090
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: A0A4D9D835_9STRA (Cnd1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D835_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 NQVALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
            ++V+ KHL+E VVP L +LK  LERAHSP++R +M YF E++R
Sbjct:  635 SKVSRKHLLEHVVPELVSLKACLERAHSPLIRNVMEYFLELMR 677
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: UPI001CF3792D (condensin-2 complex subunit D3-like isoform X1 n=8 Tax=Acropora TaxID=6127 RepID=UPI001CF3792D)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 20/43 (46.51%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 NQVALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
             QV  K+++E ++PI+  LKH+LE+ HSP+LR+LMS   E+++
Sbjct: 1158 TQVVKKNMIENIIPIIIELKHLLEKQHSPLLRDLMSCLKEVMK 1200
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: UPI00077A6225 (condensin-2 complex subunit D3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A6225)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 20/43 (46.51%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 NQVALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
             QV  K+++E ++PI+  LKH+LE+ HSP+LR+LMS   E+++
Sbjct:  989 TQVVKKNMIENIIPIIIELKHLLEKQHSPLLRDLMSCLKEVMK 1031
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BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Match: A0A8B7ZLI1_ACAPL (condensin-2 complex subunit D3-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZLI1_ACAPL)

HSP 1 Score: 47.0 bits (110), Expect = 9.180e-5
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 NQVALKHLMETVVPILTALKHVLERAHSPILRELMSYFGEILR 129
             QV  ++++E +VP++ ALKH LE+AHSP LR LM Y  ++++
Sbjct: 1262 TQVVKRNVIENIVPVVIALKHTLEKAHSPTLRHLMLYLKQLMK 1304
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8518.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FP86_ECTSI2.070e-1483.72Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JKF8_9PHAE8.810e-1382.93Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7TNH2_9STRA7.460e-655.81Condensin-2 complex subunit d3 n=1 Tax=Nannochloro... [more]
A0A4D9D835_9STRA7.470e-655.81Cnd1 domain-containing protein n=1 Tax=Nannochloro... [more]
UPI001CF3792D4.900e-546.51condensin-2 complex subunit D3-like isoform X1 n=8... [more]
UPI00077A62254.900e-546.51condensin-2 complex subunit D3-like n=1 Tax=Acropo... [more]
A0A8B7ZLI1_ACAPL9.180e-546.51condensin-2 complex subunit D3-like n=1 Tax=Acanth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8518contigA-nodosum_M_contig8518:608..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FP86
PFAMsCnd1
Model size129
Max annot lvl2759|Eukaryota
KEGG koko:K11491
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.47e-11
EggNOG OGsKOG0413@1|root,KOG0413@2759|Eukaryota
Descriptionmeiotic chromosome condensation
Cds size105
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870229.8730597-CDS-A-nodosum_M_contig8518:607..7121680870229.8730597-CDS-A-nodosum_M_contig8518:607..712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8518 608..712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870229.8878307-UTR-A-nodosum_M_contig8518:712..7361680870229.8878307-UTR-A-nodosum_M_contig8518:712..736Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8518 713..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8518.1.1prot_A-nodosum_M_contig8518.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8518 608..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8518.1.1

>prot_A-nodosum_M_contig8518.1.1 ID=prot_A-nodosum_M_contig8518.1.1|Name=mRNA_A-nodosum_M_contig8518.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=35bp
METVVPILTALKHVLERAHSPILRELMSYFGEILR
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mRNA from alignment at A-nodosum_M_contig8518:608..736-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8518.1.1 ID=mRNA_A-nodosum_M_contig8518.1.1|Name=mRNA_A-nodosum_M_contig8518.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at A-nodosum_M_contig8518:608..736- (Ascophyllum nodosum dioecious)
AATCAGGTGGCGCTGAAACATCTCATGGAGACTGTTGTGCCGATCTTAAC
TGCGCTGAAGCACGTGCTTGAGAGGGCTCATTCGCCCATACTCCGGGAAC
TTATGTCGTACTTCGGGGAGATCTTGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8518:608..736-

>mRNA_A-nodosum_M_contig8518.1.1 ID=mRNA_A-nodosum_M_contig8518.1.1|Name=mRNA_A-nodosum_M_contig8518.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=105bp|location=Sequence derived from alignment at A-nodosum_M_contig8518:608..736- (Ascophyllum nodosum dioecious)
ATGGAGACTGTTGTGCCGATCTTAACTGCGCTGAAGCACGTGCTTGAGAG
GGCTCATTCGCCCATACTCCGGGAACTTATGTCGTACTTCGGGGAGATCT
TGAGG
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