mRNA_A-nodosum_M_contig849.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig849.2.1
Unique NamemRNA_A-nodosum_M_contig849.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 3.660e-63
Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
            S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P   HW A    L Y   T+DLGITY  G    GL  + YVD+ +A   D RRSVS  A  VGG  +S  S+ Q + + +S   EY+A  E                         ++ DNQG I +  N  SS RT+HIDV+++ +R     G + + +V + EQH D+LTKAL   + + H + L N
Sbjct:  830 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMN 1243          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 4.450e-63
Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
            S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P   HW A    L Y   T+DLGITY  G    GL  + YVD+ +A   D RRSVS  A  VGG  +S  S+ Q + + +S   EY+A  E                         ++ DNQG I +  N  SS RT+HIDV+++ +R     G + + +V + EQH D+LTKAL   + + H + L N
Sbjct: 1209 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMN 1622          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 4.550e-63
Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
            S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P   HW A    L Y   T+DLGITY  G    GL  + YVD+ +A   D RRSVS  A  VGG  +S  S+ Q + + +S   EY+A  E                         ++ DNQG I +  N  SS RT+HIDV+++ +R     G + + +V + EQH D+LTKAL   + + H + L N
Sbjct: 1372 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMN 1785          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 4.510e-62
Identity = 136/426 (31.92%), Postives = 219/426 (51.41%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAEIVN-------------------------DNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
            S+R + A A  +  +L H D +QA +Q+++DE +++ L Q        +  L   +YGL Q+   W    T  +      Q  A  CVF  + +G V+ +IVV+VDDI    + KE   +   DL+    +K+LGE  +Y  C   R+ +   L   Q  + E +  ++ +     +P+   VK        T+  E E    +P+RE VG+L+W AT TRP++  A   +A++C +P  VHWKAA   L Y   T  +GIT++ GV + G++   +VD+D+A+    RRSVS G  M GGG ++W SR Q+    ++   EYVA+A+++                          DNQG I++A+N  ++  ++HIDV+H+ +R+ VE   + I +V +  QH D LTKA+   +  LH   + N
Sbjct:   20 SVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKL-------TDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVT-GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMN 436          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.430e-61
Identity = 149/412 (36.17%), Postives = 216/412 (52.43%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKAL 1161
            S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P   HW A    L Y   T+DLGITY  G    GL  + YVD+ +A   D RRSVS  A  VGG  +S  S+ Q + + +S   EY+A  E                         ++ DNQG I +  N  SS RT+HIDV+++ +R     G + + +V + EQH D+LTKAL
Sbjct: 1229 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI)

HSP 1 Score: 223 bits (569), Expect = 5.050e-61
Identity = 148/424 (34.91%), Postives = 229/424 (54.01%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNT-GMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAEIVN------------------------DNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKAL 1197
            S+RA+LA AA +  E+   D + A L   +DE IY+ L          V L+R ++YGL QS   W ++F   +   + E S+A  CV    +DG++V ++ +YVDD+L  SK K    + ++ L + F+I  +G  E+++G  I R+R  +T+   Q  Y   V +KF + +  G+         LSK   P +   ++ M +IP+RE VG+L++AA ++RP+++FA   ++++ +NPGP HW+A    +RY   T   GI YDG  T+ GL    Y DSD+A+ PD+RRS S    ++ GG +SW+S+ QR+   ++   EYVA  +                           DNQG IK+  N    +RT+HIDV+ + +R+  E G V I YV S +Q  DILTKAL   +FE +   L
Sbjct:  807 SVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMVLPDGAPNTGRVVKLIR-LLYGLKQSPRQWNKRFVKFLTTFTFEVSNADRCVMRGEIDGQLV-LLAIYVDDLLCMSKSKTAVDKVMAHLMTEFEIT-IGSTEYFVGFKIKRDRSKKTIKISQCNYLLRVAEKFGMMDAKGISTPAESHMYLSKSMAPEDDDGKQAMAKIPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGPEHWQAVKRIIRYAKETATYGIVYDGQNTN-GLI--VYSDSDYASDPDTRRSTSGYITVLAGGAVSWMSQRQRIVTLSTTEAEYVAACDATKEAIWIQRFLKSVGVNEKGPTEMRLDNQGSIKLVKNLEFHKRTKHIDVRFHFIREVYENGQVDIKYVPSSKQLADILTKALPKNSFEANRAGL 1224          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 4.600e-60
Identity = 149/427 (34.89%), Postives = 208/427 (48.71%), Query Frame = 1
Query:    4 MRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDE--GRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
            +R + A A   G +L H D EQA +Q+++ E +Y+ L Q   A    +  LR  +YGL Q+   W +    G+K    EQ  A  CV   I +G V  V+VV+VDDI    K    E  GR   DL+    I +LGE   Y G   +R+    T+T  Q  Y   +  KF VT     PM  GVK   +E     P   E     P+R  VG L+W A  TRP++L A   +A++   P  VHWKAA   + Y   T+  GIT   G T+ G++   YVDSD+A+    RRSVS G  M  G  +S+ SR Q+    +S   EY A+A+                         I  DN G + +ANN  ++  ++HIDV+H+ +R+ V+ G  ++VYV S  QH D LTK L    F +H   + N
Sbjct:  697 IRLLAALACELGLDLCHFDAEQAFVQSELVECVYLRLPQGCGALSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGR---DLNEYVPITNLGELRLYAGIRFSRDFAQGTITLSQQTYATNMVAKFGVTRNKETPMAVGVK--LEEFDACEPDVEE-----PFRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMVMYIRCTRAYGITLQRG-TAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMN 1112          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 5.140e-60
Identity = 149/426 (34.98%), Postives = 218/426 (51.17%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
            S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+  A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E ++    P RE VG+++W +T +RP++ FA   +A+    P   HW A    L Y   T+DLGITY  G    GL  + YVD+ +A   D RRSVS  A  VGG  +S  S+A+ + + +S   EY+A  E                         ++ DNQG I +  N  SS   +HIDV+ + +R     G   + +V + EQH DILT+AL   + + H + L N
Sbjct:  421 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMN 834          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 3.810e-59
Identity = 142/426 (33.33%), Postives = 217/426 (50.94%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNP----KEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITY--DGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELH 1185
            S R V+A A     EL H D EQA +Q+++D  ++++L     +    V  L   +YGL Q+   ++++    +K    EQS +  CV   ++  EVV ++ ++VDDIL A   K      ++ L      K+LGE  F+LGC   R+R+A T+   Q  Y  +V ++FNV  T  IP +           PTN      E E    +P+RE VG+L+W A  TRP++  A   +A+    P   HWKAA   L Y   T  L + +  D  V +  L    YVD+D A+  + RRSVS    +V   P+ W+S+ Q+  + ++   EY+A+ +                         ++ DN+G I +A N  SS R++HIDV+H+ +R+  EEG++ + +V SEEQH DILTKAL    FE+H
Sbjct:  541 SHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGT-KSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPAS-----------PTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTL---VYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951          
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 3.870e-59
Identity = 144/434 (33.18%), Postives = 219/434 (50.46%), Query Frame = 1
Query:    1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNP----KEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITY--DGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTNSR 1209
            S R V+A A     EL H D EQA +Q+++D  ++++L     +    V  L   +YGL Q+   ++++    +K    EQS +  CV   ++  EVV ++ ++VDDIL A   K      ++ L      K+LGE  F+LGC   R+R+A T+   Q  Y  +V ++FNV  T  IP +           PTN      E E    +P+RE VG+L+W A  TRP++  A   +A+    P   HWKAA   L Y   T  L + +  D  V +  L    YVD+D A+  + RRSVS    +V   P+ W+S+ Q+  + ++   EY+A+ +                         ++ DN+G I +A N  SS R++HIDV+H+ +R+  EEG++ + +V SEEQH DILTKAL    FE+H      SR
Sbjct:  808 SHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGT-KSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPAS-----------PTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTL---VYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSR 1226          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE3.660e-6335.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.450e-6335.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.550e-6335.68Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JEF2_9PHAE4.510e-6231.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE4.430e-6136.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0J7KA47_LASNI5.050e-6134.91Retroelement pol polyprotein n=1 Tax=Lasius niger ... [more]
A0A6H5JCD8_9PHAE4.600e-6034.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQN6_9PHAE5.140e-6034.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE3.810e-5933.33Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE3.870e-5933.18Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig849contigA-nodosum_M_contig849:73845..75131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo139221
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1212
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.76e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size687
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.2911146-CDS-A-nodosum_M_contig849:73844..740631680870224.2911146-CDS-A-nodosum_M_contig849:73844..74063Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig849 73845..74063 -
1680870224.3060563-CDS-A-nodosum_M_contig849:74138..746061680870224.3060563-CDS-A-nodosum_M_contig849:74138..74606Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig849 74139..74606 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.3861632-UTR-A-nodosum_M_contig849:74606..751311680870224.3861632-UTR-A-nodosum_M_contig849:74606..75131Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig849 74607..75131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig849.2.1prot_A-nodosum_M_contig849.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig849 73845..74606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig849.2.1

>prot_A-nodosum_M_contig849.2.1 ID=prot_A-nodosum_M_contig849.2.1|Name=mRNA_A-nodosum_M_contig849.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp
MIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLL
FAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTS
AYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVA
LAEIVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRS
EEQHTDILTKALDMRTFELHAKALTNSR*
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mRNA from alignment at A-nodosum_M_contig849:73845..75131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig849.2.1 ID=mRNA_A-nodosum_M_contig849.2.1|Name=mRNA_A-nodosum_M_contig849.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1287bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73845..75131- (Ascophyllum nodosum dioecious)
AGCATGAGGGCAGTACTTGCCACCGCGGCCGTGAAGGGTTGGGAACTCCC GCACATCGATGGCGAGCAAGCATGTCTTCAGGCTGACATCGATGAAGCGA TCTACATCGAACTACTCCAAGACTACCGCGCGTTTCCGAACGCGGTCGGC TTGCTGAGGAATGTCATCTATGGGTTGGTGCAATCAGGATTATGCTGGTT CCGAAAATTCACAGACGGTATCAAAGAAAAGAGCGTCGAACAGTCCCACG CGGTTTGATGCGTGTTCAGTAGAATCGTCGACGGCGAAGTCGTGACCGTT ATTGTGGTATACGTCGACGACATACTGCTGGCGAGCAAAATAAAGGAGGA TGAGGGAAGGACGTTGTCGGATCTCAGTTCATGCTTCAAGATTAAGGACC TCGGGGAAGCGGAATTCTACCTAGGATGTCATATCACGCGGAACAGGAAA GCAAGGACATTGACCTTCGACCAACATATCTATCCCGAGACCGTGGAAAA GAAATTCAATGTGACCAATACTGGCATGATCCCGATGACAACAGGGGTGA AGCCTCTATCCAAGGAGGGCGGTCCTACAAACCCCAAAGAAAGGGAAGAA ATGCGTCGCATCCCATACAGGGAGGAAGTGGGGGCTCTGATTTGGGCGGC GACCATGACTAGACCGAATCTTTTGTTTGCGGCGCATACCCTGGCCAAGT TCTGCGACAACCCCGGACCAGTACACTGGAAGGCGGCAACAATAGCGCTA CGGTACTTCTGGCTGACGAAGGACCTCGGCATCACCTATGATGGCGGAGT TACATCAAGGGGTTTGACGACGTCAGCATACGTCGACTCCGACCATGCAA CATGCCCGGATAGCCGACGTTCGGTCTCAGATGGAGCAGATATGGTGGGA GGTGGCCCGATAAGTTGGCTCTCACGCGCACAGAGGGTAACAGCGTCGGC GTCATACGGGTTGGAGTATGTGGCGCTTGCAGAAATCGTGAATGTAACTA AGTTCCTTCGTCAGATGCAAGAGTTCATCATGCCTACTCTGAGGAGCTGC ACGATTTCAATCATGTAGGATAATCAAGGTGAAATCAAGGTGGCGAACAA CAAACACAGCAGCAGAAGAACGCGCCACATCGACGTCAAGCACAACATTG TTCGAGACGCCGTCGAGGAGGGATTGGTCCGCATTGTTTATGTTAGGAGT GAAGAGCAGCATACAGACATACTCACGAAGGCTTTAGATATGAGGACTTT CGAGCTGCACGCGAAAGCTCTAACAAATTCGAGGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig849:73845..75131-

>mRNA_A-nodosum_M_contig849.2.1 ID=mRNA_A-nodosum_M_contig849.2.1|Name=mRNA_A-nodosum_M_contig849.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=687bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73845..75131- (Ascophyllum nodosum dioecious)
ATGATCCCGATGACAACAGGGGTGAAGCCTCTATCCAAGGAGGGCGGTCC
TACAAACCCCAAAGAAAGGGAAGAAATGCGTCGCATCCCATACAGGGAGG
AAGTGGGGGCTCTGATTTGGGCGGCGACCATGACTAGACCGAATCTTTTG
TTTGCGGCGCATACCCTGGCCAAGTTCTGCGACAACCCCGGACCAGTACA
CTGGAAGGCGGCAACAATAGCGCTACGGTACTTCTGGCTGACGAAGGACC
TCGGCATCACCTATGATGGCGGAGTTACATCAAGGGGTTTGACGACGTCA
GCATACGTCGACTCCGACCATGCAACATGCCCGGATAGCCGACGTTCGGT
CTCAGATGGAGCAGATATGGTGGGAGGTGGCCCGATAAGTTGGCTCTCAC
GCGCACAGAGGGTAACAGCGTCGGCGTCATACGGGTTGGAGTATGTGGCG
CTTGCAGAAATCGTGAATGATAATCAAGGTGAAATCAAGGTGGCGAACAA
CAAACACAGCAGCAGAAGAACGCGCCACATCGACGTCAAGCACAACATTG
TTCGAGACGCCGTCGAGGAGGGATTGGTCCGCATTGTTTATGTTAGGAGT
GAAGAGCAGCATACAGACATACTCACGAAGGCTTTAGATATGAGGACTTT
CGAGCTGCACGCGAAAGCTCTAACAAATTCGAGGTAG
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