mRNA_A-nodosum_M_contig849.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 229 bits (585), Expect = 3.660e-63 Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P HW A L Y T+DLGITY G GL + YVD+ +A D RRSVS A VGG +S S+ Q + + +S EY+A E ++ DNQG I + N SS RT+HIDV+++ +R G + + +V + EQH D+LTKAL + + H + L N
Sbjct: 830 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMN 1243
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 229 bits (585), Expect = 4.450e-63 Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P HW A L Y T+DLGITY G GL + YVD+ +A D RRSVS A VGG +S S+ Q + + +S EY+A E ++ DNQG I + N SS RT+HIDV+++ +R G + + +V + EQH D+LTKAL + + H + L N
Sbjct: 1209 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMN 1622
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 229 bits (585), Expect = 4.550e-63 Identity = 152/426 (35.68%), Postives = 222/426 (52.11%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P HW A L Y T+DLGITY G GL + YVD+ +A D RRSVS A VGG +S S+ Q + + +S EY+A E ++ DNQG I + N SS RT+HIDV+++ +R G + + +V + EQH D+LTKAL + + H + L N
Sbjct: 1372 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMN 1785
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 215 bits (548), Expect = 4.510e-62 Identity = 136/426 (31.92%), Postives = 219/426 (51.41%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAEIVN-------------------------DNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
S+R + A A + +L H D +QA +Q+++DE +++ L Q + L +YGL Q+ W T + Q A CVF + +G V+ +IVV+VDDI + KE + DL+ +K+LGE +Y C R+ + L Q + E + ++ + +P+ VK T+ E E +P+RE VG+L+W AT TRP++ A +A++C +P VHWKAA L Y T +GIT++ GV + G++ +VD+D+A+ RRSVS G M GGG ++W SR Q+ ++ EYVA+A+++ DNQG I++A+N ++ ++HIDV+H+ +R+ VE + I +V + QH D LTKA+ + LH + N
Sbjct: 20 SVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKL-------TDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVT-GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMN 436
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 224 bits (570), Expect = 4.430e-61 Identity = 149/412 (36.17%), Postives = 216/412 (52.43%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKAL 1161
S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P HW A L Y T+DLGITY G GL + YVD+ +A D RRSVS A VGG +S S+ Q + + +S EY+A E ++ DNQG I + N SS RT+HIDV+++ +R G + + +V + EQH D+LTKAL
Sbjct: 1229 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI) HSP 1 Score: 223 bits (569), Expect = 5.050e-61 Identity = 148/424 (34.91%), Postives = 229/424 (54.01%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNT-GMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAEIVN------------------------DNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKAL 1197
S+RA+LA AA + E+ D + A L +DE IY+ L V L+R ++YGL QS W ++F + + E S+A CV +DG++V ++ +YVDD+L SK K + ++ L + F+I +G E+++G I R+R +T+ Q Y V +KF + + G+ LSK P + ++ M +IP+RE VG+L++AA ++RP+++FA ++++ +NPGP HW+A +RY T GI YDG T+ GL Y DSD+A+ PD+RRS S ++ GG +SW+S+ QR+ ++ EYVA + DNQG IK+ N +RT+HIDV+ + +R+ E G V I YV S +Q DILTKAL +FE + L
Sbjct: 807 SVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMVLPDGAPNTGRVVKLIR-LLYGLKQSPRQWNKRFVKFLTTFTFEVSNADRCVMRGEIDGQLV-LLAIYVDDLLCMSKSKTAVDKVMAHLMTEFEIT-IGSTEYFVGFKIKRDRSKKTIKISQCNYLLRVAEKFGMMDAKGISTPAESHMYLSKSMAPEDDDGKQAMAKIPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGPEHWQAVKRIIRYAKETATYGIVYDGQNTN-GLI--VYSDSDYASDPDTRRSTSGYITVLAGGAVSWMSQRQRIVTLSTTEAEYVAACDATKEAIWIQRFLKSVGVNEKGPTEMRLDNQGSIKLVKNLEFHKRTKHIDVRFHFIREVYENGQVDIKYVPSSKQLADILTKALPKNSFEANRAGL 1224
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 220 bits (561), Expect = 4.600e-60 Identity = 149/427 (34.89%), Postives = 208/427 (48.71%), Query Frame = 1
Query: 4 MRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDE--GRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
+R + A A G +L H D EQA +Q+++ E +Y+ L Q A + LR +YGL Q+ W + G+K EQ A CV I +G V V+VV+VDDI K E GR DL+ I +LGE Y G +R+ T+T Q Y + KF VT PM GVK +E P E P+R VG L+W A TRP++L A +A++ P VHWKAA + Y T+ GIT G T+ G++ YVDSD+A+ RRSVS G M G +S+ SR Q+ +S EY A+A+ I DN G + +ANN ++ ++HIDV+H+ +R+ V+ G ++VYV S QH D LTK L F +H + N
Sbjct: 697 IRLLAALACELGLDLCHFDAEQAFVQSELVECVYLRLPQGCGALSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGR---DLNEYVPITNLGELRLYAGIRFSRDFAQGTITLSQQTYATNMVAKFGVTRNKETPMAVGVK--LEEFDACEPDVEE-----PFRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMVMYIRCTRAYGITLQRG-TAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMN 1112
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 218 bits (555), Expect = 5.140e-60 Identity = 149/426 (34.98%), Postives = 218/426 (51.17%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITYDGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTN 1203
S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ A TL Q Y +++ ++F+V +T IP T G + GP +E ++ P RE VG+++W +T +RP++ FA +A+ P HW A L Y T+DLGITY G GL + YVD+ +A D RRSVS A VGG +S S+A+ + + +S EY+A E ++ DNQG I + N SS +HIDV+ + +R G + +V + EQH DILT+AL + + H + L N
Sbjct: 421 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG---SGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMN 834
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 217 bits (552), Expect = 3.810e-59 Identity = 142/426 (33.33%), Postives = 217/426 (50.94%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNP----KEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITY--DGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELH 1185
S R V+A A EL H D EQA +Q+++D ++++L + V L +YGL Q+ ++++ +K EQS + CV ++ EVV ++ ++VDDIL A K ++ L K+LGE F+LGC R+R+A T+ Q Y +V ++FNV T IP + PTN E E +P+RE VG+L+W A TRP++ A +A+ P HWKAA L Y T L + + D V + L YVD+D A+ + RRSVS +V P+ W+S+ Q+ + ++ EY+A+ + ++ DN+G I +A N SS R++HIDV+H+ +R+ EEG++ + +V SEEQH DILTKAL FE+H
Sbjct: 541 SHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGT-KSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPAS-----------PTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTL---VYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 218 bits (555), Expect = 3.870e-59 Identity = 144/434 (33.18%), Postives = 219/434 (50.46%), Query Frame = 1
Query: 1 SMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNP----KEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPVHWKAATIALRYFWLTKDLGITY--DGGVTSRGLTTSAYVDSDHATCPDSRRSVSDGADMVGGGPISWLSRAQRVTASASYGLEYVALAE-------------------------IVNDNQGEIKVANNKHSSRRTRHIDVKHNIVRDAVEEGLVRIVYVRSEEQHTDILTKALDMRTFELHAKALTNSR 1209
S R V+A A EL H D EQA +Q+++D ++++L + V L +YGL Q+ ++++ +K EQS + CV ++ EVV ++ ++VDDIL A K ++ L K+LGE F+LGC R+R+A T+ Q Y +V ++FNV T IP + PTN E E +P+RE VG+L+W A TRP++ A +A+ P HWKAA L Y T L + + D V + L YVD+D A+ + RRSVS +V P+ W+S+ Q+ + ++ EY+A+ + ++ DN+G I +A N SS R++HIDV+H+ +R+ EEG++ + +V SEEQH DILTKAL FE+H SR
Sbjct: 808 SHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGT-KSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPAS-----------PTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTL---VYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSR 1226 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig849.2.1 >prot_A-nodosum_M_contig849.2.1 ID=prot_A-nodosum_M_contig849.2.1|Name=mRNA_A-nodosum_M_contig849.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=229bp MIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLback to top mRNA from alignment at A-nodosum_M_contig849:73845..75131- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig849.2.1 ID=mRNA_A-nodosum_M_contig849.2.1|Name=mRNA_A-nodosum_M_contig849.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1287bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73845..75131- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig849:73845..75131- >mRNA_A-nodosum_M_contig849.2.1 ID=mRNA_A-nodosum_M_contig849.2.1|Name=mRNA_A-nodosum_M_contig849.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=687bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73845..75131- (Ascophyllum nodosum dioecious)back to top |