mRNA_A-nodosum_M_contig84.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig84.18.1
Unique NamemRNA_A-nodosum_M_contig84.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig84.18.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.280e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   97 DKSARNKRGRKPGDVFCPQVAVYNKERIKRMLGMGVPHANKDP 225
            ++ ARNK+GRKPGDVF P V    KERIK MLGMG   A+  P
Sbjct:  181 NRLARNKKGRKPGDVFSPTVEDDKKERIKIMLGMGTADASAQP 223
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI1.280e-560.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:22652..23608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWJ1
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size372
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.1e-06
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size372
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870195.2358444-CDS-A-nodosum_M_contig84:22651..227261680870195.2358444-CDS-A-nodosum_M_contig84:22651..22726Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 22652..22726 +
1680870195.2489855-CDS-A-nodosum_M_contig84:23050..232661680870195.2489855-CDS-A-nodosum_M_contig84:23050..23266Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 23051..23266 +
1680870195.2629843-CDS-A-nodosum_M_contig84:23527..236081680870195.2629843-CDS-A-nodosum_M_contig84:23527..23608Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 23528..23608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.18.1prot_A-nodosum_M_contig84.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig84 22652..23608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig84.18.1

>prot_A-nodosum_M_contig84.18.1 ID=prot_A-nodosum_M_contig84.18.1|Name=mRNA_A-nodosum_M_contig84.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
IEAKERKLFTPLWRAAYYGHPQAVEVLLLKGADKSARNKRGRKPGDVFCP
QVAVYNKERIKRMLGMGVPHANKDPEPRDETVGPEPRGPAAEPPPYKARA
DNTEELDNVDLQMQELNQGVVEA*
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mRNA from alignment at A-nodosum_M_contig84:22652..23608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig84.18.1 ID=mRNA_A-nodosum_M_contig84.18.1|Name=mRNA_A-nodosum_M_contig84.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=957bp|location=Sequence derived from alignment at A-nodosum_M_contig84:22652..23608+ (Ascophyllum nodosum dioecious)
ATCGAAGCAAAAGAGCGCAAGCTCTTCACCCCCCTCTGGCGGGCGGCTTA
TTACGGGCACCCGCAAGCTGTGGAGGTAAAGAGAACAAGAGTTGGTTAGC
TTAGATTAGAGATGCGTTTCGTTCTTCGATTTTTTTTTTTTTTTTTTTTC
TTCTTCATTTTTCCTCGAATTGCGGGAGAGCTTTCCTTCGACAGCGTAAT
CGCTACGCTCAAACACGCACAATGCGTTTTGGTGTCTGTGGGACCATGCT
CGGGAGGGACTCTTTTCGCCCCAGCGCGATTCGTCGAAAGATATACAGTA
CTATGCTGGGAGGCTTAAAAACCCCTCCCGCCAACGCTGCTACCCTCTCC
CGGGTGCCGTTTTATCCTTCCGATACCGTGTTCGCTTTTGGTGACCCAGG
TCCTGCTGCTGAAGGGGGCCGACAAATCGGCCCGAAACAAAAGGGGCCGG
AAACCCGGGGACGTATTCTGTCCCCAGGTTGCGGTATATAATAAAGAACG
CATCAAGAGGATGCTGGGCATGGGCGTGCCGCACGCCAACAAGGACCCCG
AACCTCGCGACGAAACAGTGGGGCCTGAGCCCCGGGGTCCAGCTGCGGAA
CCCCCCCCCTACAAGGTAGGGAGGAGTTACACAGCGTTTATCGGCGATGG
AGGGAAGACACTTTTTATCTCCTAGATGCGTTGAGTGCATTGACTGAGAG
AGACCCCGTTTGCGTGACGTGCTTGCTATCTTGCGGTGGGCGGGAGGGAG
CTAAAAGTACCTTTGCCGGCAGCGACCGTCCGCGTGCACCCAAACAATAC
GAGCTTGCTTCTTGAGATCTGCGCCTTTCATCCTCGGCGCTCTGATTTCG
GTACCTTGTACCTTGTACCTTGGCAGGCTCGGGCTGATAATACCGAGGAG
CTGGACAACGTGGACCTTCAAATGCAGGAACTCAATCAAGGGGTAGTCGA
AGCGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig84:22652..23608+

>mRNA_A-nodosum_M_contig84.18.1 ID=mRNA_A-nodosum_M_contig84.18.1|Name=mRNA_A-nodosum_M_contig84.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig84:22652..23608+ (Ascophyllum nodosum dioecious)
ATCGAAGCAAAAGAGCGCAAGCTCTTCACCCCCCTCTGGCGGGCGGCTTA
TTACGGGCACCCGCAAGCTGTGGAGGTCCTGCTGCTGAAGGGGGCCGACA
AATCGGCCCGAAACAAAAGGGGCCGGAAACCCGGGGACGTATTCTGTCCC
CAGGTTGCGGTATATAATAAAGAACGCATCAAGAGGATGCTGGGCATGGG
CGTGCCGCACGCCAACAAGGACCCCGAACCTCGCGACGAAACAGTGGGGC
CTGAGCCCCGGGGTCCAGCTGCGGAACCCCCCCCCTACAAGGCTCGGGCT
GATAATACCGAGGAGCTGGACAACGTGGACCTTCAAATGCAGGAACTCAA
TCAAGGGGTAGTCGAAGCGTGA
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