mRNA_A-nodosum_M_contig8396.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 170 bits (431), Expect = 4.650e-47 Identity = 106/249 (42.57%), Postives = 140/249 (56.22%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSDQCWR 901
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF+VGYAPT T T K FW L + + EV + DHL+++MDANARTG R GG DA+VLG YGRD +N+NG RL A + + S+ T+F TPK G + KE YR LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR R G + D + L D+ R
Sbjct: 38 SGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLR 282
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.260e-45 Identity = 103/249 (41.37%), Postives = 142/249 (57.03%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSDQCWR 901
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF++GYAPT T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS+ T+F TPK G + KE YR LD+IL+RQ RR VR+++V SDH LV ++RL R APNRR R G + D + L D+ R
Sbjct: 38 SGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKEKYR--LDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLR 282
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 166 bits (420), Expect = 2.640e-44 Identity = 102/249 (40.96%), Postives = 139/249 (55.82%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSDQCWR 901
SG G K G+ GVG+ ++E++ ++G G E I RL+KV + F+VGYAPT T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS+ T+F TPK G + KE YR LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR R G + D + L D+ R
Sbjct: 141 SGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSRRIRIDLERLRKDKHLR 385
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE) HSP 1 Score: 164 bits (415), Expect = 9.340e-44 Identity = 103/249 (41.37%), Postives = 139/249 (55.82%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSDQCWR 901
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF+VGYAPT T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS+ T+ TPK G + KE Y LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR R G + D L D+ R
Sbjct: 70 SGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPKGGVQQTFQSSNKGKEKYC--LDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSSRIRIDLGRLRKDKHLR 314
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 160 bits (406), Expect = 3.270e-43 Identity = 98/225 (43.56%), Postives = 131/225 (58.22%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 829
SG G K G+ GVG+A++E++ ++G G E I+ RL+KV + TF+VGYAPT T T K FW L + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A +LS+ T+F TPK G + KE YR LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR
Sbjct: 38 SGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.330e-43 Identity = 104/249 (41.77%), Postives = 141/249 (56.63%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSDQCWR 901
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF+V YAPT T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS+ T+F TPK G + KE YR LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR R G + D + L D+ R
Sbjct: 717 SGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLR 961
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.400e-43 Identity = 103/245 (42.04%), Postives = 140/245 (57.14%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSD 889
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF+VGYAPT TA K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS++ T+F TPK G + KE +R LD+IL+RQ RRLVRN +V SDH LV ++R R APNRR R G + D + L D
Sbjct: 38 SGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKD 278
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.500e-43 Identity = 103/245 (42.04%), Postives = 140/245 (57.14%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSD 889
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF+VGYAPT TA K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS++ T+F TPK G + KE +R LD+IL+RQ RRLVRN +V SDH LV ++R R APNRR R G + D + L D
Sbjct: 150 SGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKD 390
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 167 bits (424), Expect = 3.500e-43 Identity = 102/238 (42.86%), Postives = 137/238 (57.56%), Query Frame = 2
Query: 179 SGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFD 868
SG G K G+ GVG+A++E++ ++G G E IS RL+KV + TF+VGYAPT T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +N+NG RLL A + +LS+ T+F TPK G + KE YR LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR R G + D
Sbjct: 38 SGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSSRIRID 271
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Match: A0A6H5JVI3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI3_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.070e-42 Identity = 120/318 (37.74%), Postives = 161/318 (50.63%), Query Frame = 2
Query: 2 QHVRKGWWLPHGTSAPCLREGPTAR-GTRRIF*CLLQSTSATSS--PYRRLAAMGGQPSKHCSGHC-------DGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARLLKVTVIFKHRAATTFIVGYAPTNTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLRDARVLGPYGRDTLNDNGSRLLACAVEYKLSIVKTFFSTPKRGGNSDAFTYEGPKESYRWRLDYILVRQHGRRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRRRPEEGHHGVPFDRKLLTSDQCWR 901
+H R W T + P+ R G RR +S +T+S P R GQ S G+ G G+ GVG+A++E++ ++G G E IS RL+KV + TF+VGYAPT T T K FW L + + EV + DHLI+ MDANARTG R G DA+++G Y RD +N+NG RLL A + +LS+ T+F TPK G + KE YR LD+IL+RQ RR VRN++V SDH LV ++RL R APNRR R G + D + L D+ R
Sbjct: 90 KHTRNARWTERDTRP----QRPSRRLGRRRHERATYRSARSTTSGDPTRGETRREGQGSIAHDGYVIIWSGARAGTKDNRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLIVPMDANARTGRRRHG--CCDAKIMGAYERDIINNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSSRIRIDLERLRKDKHLR 399 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8396.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8396.1.1 >prot_A-nodosum_M_contig8396.1.1 ID=prot_A-nodosum_M_contig8396.1.1|Name=mRNA_A-nodosum_M_contig8396.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=250bp MGGQPSKHCSGHCDGDGGKPGILGVGLAVRESIARALGPNGIVPEHISARback to top mRNA from alignment at A-nodosum_M_contig8396:21671..22571+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8396.1.1 ID=mRNA_A-nodosum_M_contig8396.1.1|Name=mRNA_A-nodosum_M_contig8396.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at A-nodosum_M_contig8396:21671..22571+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8396:21671..22571+ >mRNA_A-nodosum_M_contig8396.1.1 ID=mRNA_A-nodosum_M_contig8396.1.1|Name=mRNA_A-nodosum_M_contig8396.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at A-nodosum_M_contig8396:21671..22571+ (Ascophyllum nodosum dioecious)back to top |