mRNA_A-nodosum_M_contig838.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: D7FKD0_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD0_ECTSI) HSP 1 Score: 293 bits (750), Expect = 7.640e-96 Identity = 131/186 (70.43%), Postives = 158/186 (84.95%), Query Frame = 1
Query: 1 MYAYLMYVTTVLCVRTCQVGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAP-ATSELPEMKPIPISVGHHTPYDNFVAPGRVDDVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAGGRFSKQKNMEIWDPADPKGDTSKKPIRELKEV 555
M AY + + VGD+KFG+L G+D+HGNKYYENKDYPYGQHRWVEYADIHNYDSS+VTA+WHPWLHHMSDH P A +ELPEMKPI I+VG HTP+++FVAPGRVDDVNR+TWRPRGAG+GNI+Q+PGEP++Y+KQPGHP + ++ GGRFSKQK+ME WDP DPKG +K+PIR+L EV
Sbjct: 10 MQAYRQFGLRAALTKMYTVGDIKFGDLKGEDSHGNKYYENKDYPYGQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAAAELPEMKPIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGNIWQEPGEPDMYYKQPGHPQHALSDKGGRFSKQKSMETWDPKDPKGLNTKQPIRDLTEV 195
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A835ZAE7_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE7_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.240e-51 Identity = 89/170 (52.35%), Postives = 110/170 (64.71%), Query Frame = 1
Query: 55 VGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATSELPEMKPIPISVGHHTPYDNFVAPGRVDDV---NRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAGGRFSKQKNMEIWDPADPKGDTSKKPIRELKEV 555
VG++ FG+ G D++GNKYYEN+ YG HRWVEYAD HNYDSSTVT WH WLH+M D P S P+ + S PYD V P V N + +RPRG GVGN+FQK GEPELY+KQPGHP NP++ GGRF+ + +E DP +P KKP+R L E+
Sbjct: 24 VGEINFGDFKGADSNGNKYYENRSKIYGTHRWVEYADCHNYDSSTVTPEWHGWLHNMHDTPPDQSADPKRHEL-TSSHDDCPYDTHVGPASAAPVLHQNLSGFRPRGYGVGNLFQKWGEPELYYKQPGHPANPISDKGGRFNTEPEVEFADPNNPTMLNPKKPLRSLDEL 192
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: W7TFP2_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFP2_9STRA) HSP 1 Score: 169 bits (427), Expect = 3.170e-47 Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 1
Query: 55 VGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATSELPEMKPIPISVGHHTPYDNFVAPGRVD-----DVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKA---GGRFSKQKNMEIWDPADPKGDTSKKPIRELKE 552
+G+VKFG+L G D +GNKY+EN +YP+GQHRWVEY DIHNY+ S++ WH W+HHM+D PA + I+ G HTPY VA G D +N T R RG GVG++ QK GEP+ ++ QPGHPL + GGRF K E W+P+DP+G + +PIR L E
Sbjct: 27 MGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQ--VAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDE 198
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A4D9CLK1_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLK1_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.710e-46 Identity = 84/174 (48.28%), Postives = 110/174 (63.22%), Query Frame = 1
Query: 55 VGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATSELPEMKPIPISVGHHTPYDNFVAPGRVD-----DVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKA---GGRFSKQKNMEIWDPADPKGDTSKKPIRELKE 552
+G+VKFG+L G D +GNKY+EN +YP+GQHRWVEY DIHNY+ S++ WH W+HHM+D PA + I+ G HTPY VA G D +N T R RG GVG++ QK GEP+ ++ QPGHPL + GGRF K E W+P+DP+G + +PIR L E
Sbjct: 84 MGEVKFGDLKGVDVNGNKYFENVEYPFGQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMKIAEGQHTPYQ--VATGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDE 255
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A7S0XDH0_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDH0_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.090e-37 Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 1
Query: 40 VRTCQVGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATSELPEMKPIPISVGHHTPYDNFVAPGRVD---DVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAGGRFSKQKNM 486
++ +GD+KFG L G D GNKYYE+ P+ QHRW+EYADIH++D+S + WH W+HHM D P + IP++ H Y N V V+ VN TT+R RG VG++ P EP+ Y+KQPGHPL+P+ + GGR+ K++
Sbjct: 22 IQIYMIGDIKFGVLKGTDRFGNKYYEDLSAPFNQHRWIEYADIHDFDASMIQPEWHGWMHHMYDEVPGEGTI--KTGIPLTPVSHAVYKNHVGYSNVEPLEQVNLTTYRSRGYKVGSLKTGPDEPDRYYKQPGHPLHPLVEKGGRYKHIKSI 171
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A7S2GA95_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GA95_9STRA) HSP 1 Score: 141 bits (355), Expect = 4.380e-36 Identity = 79/178 (44.38%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 55 VGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPAT------SELPEMKPIPISVGHHTPYDNFVAPGRVDD---VNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAGGRFSKQKNMEIWDPADPKGDTS--KKPIRELKEV 555
+GD+KFG +G D +GN+Y+EN DYP+GQHRWVEYADIHNYD+++V WH W+ HM D AP + +E + K + I G H+ YD+ V + +N T R RG +G I QKP E + Y K G N + GRF QK ME WDPADP G + KKP + +
Sbjct: 65 LGDIKFGECVGTDVNGNQYFENLDYPHGQHRWVEYADIHNYDAASVPPEWHGWMTHMQD-APGSDAREFITEKLKTK-LEIDKGDHSIYDHHVGHTTYEMDTLLNHTMHRKRGFNIGGIKQKPEEEDKYHKHAGSAQNKGST--GRFESQKGMEYWDPADPDGAEALKKKPYVRTRSL 238
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A7S2B0X3_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0X3_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.060e-33 Identity = 72/173 (41.62%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 55 VGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATSEL---PEMKPIPISVGHHTPYDN---FVAPGRVDDVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAG-GRFSKQKNMEIWDPADPKGDTSKKPIRELKE 552
+GDVKFG +G D +GN+Y+EN DYP+GQHRWV Y DIHNYD++ + WH W+ HM D SE ++K G YD + A +N T +R RG +G+I Q P +P+ + GH LN K G GR+ +QK M +W+P DP+G+ + P R L E
Sbjct: 14 LGDVKFGTCVGTDVNGNQYFENTDYPHGQHRWVVYRDIHNYDAAAIPPEWHGWMCHMVDAPGPDSEKFIEDKLKTKCEIDGGDECYDTHLGYTAYEMDPLLNYTNFRKRGYKIGSIKQLPDDPDAFHVHAGHALN---KGGTGRYLEQKGMHLWNPEDPEGEEAPVPTRSLAE 183
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A7S3HS43_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HS43_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.270e-31 Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 55 VGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATS-ELPEMKPIPISVGHHTPYDNFVAPGRVD---------DVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAG 459
+GD+KFG L G D GNKY+EN+D P+GQHRWVEY +IHNYDS+ + WH W+HH+ D P +P+ +P S H Y+ V GRVD ++ T +R RG +G++ P E + Y+KQPGHPL+ ++ G
Sbjct: 29 IGDLKFGELKGTDKFGNKYFENQDLPFGQHRWVEYKNIHNYDSTMIQPEWHGWMHHVYDETPNDPVAVPDY--LPTSTISHAIYNTHV--GRVDPAAAANDREQIDTTQYRRRGYKIGSLMTGPDEEDHYYKQPGHPLSKDSEKG 169
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A7S1UJS8_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJS8_9STRA) HSP 1 Score: 122 bits (306), Expect = 7.830e-30 Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query: 58 GDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHAPATS-ELPEMKPIPISVGHHTPYDNFVAPGRVDDV-----NRTTWRPRGAGVGN--IFQKPGEPELYFKQPGHPLNPVAK 453
G++KFG L+G D GNKYYEN +YP+ QHRWVE+ DIHN+D+S + WH W+HH D P + P ++ V HTP+D+ V D V N T R RG GVGN ++ P +P+ Y+KQ HP+N V K
Sbjct: 27 GEIKFGTLIGMDKMGNKYYENLEYPFPQHRWVEFKDIHNFDASMIPPEWHGWVHHTYDEPPTEAIAKPALEATAEQV--HTPFDHHVGHVSEDFVPENMHNTTQKRARGYGVGNANLYMDPEDPDEYYKQTSHPMNVVPK 164
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Match: A0A7S2WF66_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WF66_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.210e-29 Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 1
Query: 40 VRTCQVGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDH-APATSELPEMK---PIPISVGHHTPYDNFV------APGRVDDVNRTTWRPRGAGVGNIFQKPGEPELYFKQPGHPLNPVAKAGGRFSKQKNMEIWDPADPKGDTSKKPIREL 546
V+ +GD+KFG +G+D +GN Y+EN +YP+GQHRWVEY DIHN D+S+V WH W+ M D P S + K + I H Y N + AP + +N+T +R RG +G +P + + Y GH +N ++ GRF + K + +WDP++ +G+ +P R L
Sbjct: 96 VQAYTMGDIKFGKCVGEDVNGNLYFENNNYPHGQHRWVEYKDIHNLDASSVPPEWHGWMSSMQDAPGPDASGFIDTKMEDALQIDGAEHAVYANHLGLVCSTAPEGM--LNKTGFRKRGYNIGGHKMQPEDSDQYHTHSGHAINKDSR--GRFEETKGVHLWDPSEEEGEAKLQPTRSL 270 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig838.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig838.8.1 >prot_A-nodosum_M_contig838.8.1 ID=prot_A-nodosum_M_contig838.8.1|Name=mRNA_A-nodosum_M_contig838.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp MYAYLMYVTTVLCVRTCQVGDVKFGNLMGKDAHGNKYYENKDYPYGQHRWback to top mRNA from alignment at A-nodosum_M_contig838:237054..240661- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig838.8.1 ID=mRNA_A-nodosum_M_contig838.8.1|Name=mRNA_A-nodosum_M_contig838.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3608bp|location=Sequence derived from alignment at A-nodosum_M_contig838:237054..240661- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig838:237054..240661- >mRNA_A-nodosum_M_contig838.8.1 ID=mRNA_A-nodosum_M_contig838.8.1|Name=mRNA_A-nodosum_M_contig838.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at A-nodosum_M_contig838:237054..240661- (Ascophyllum nodosum dioecious)back to top |