mRNA_A-nodosum_M_contig8356.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 156 bits (395), Expect = 8.840e-39 Identity = 102/229 (44.54%), Postives = 144/229 (62.88%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFVLTRQPAKRDTICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLFVPAAELVNRVPSASTLRDSLSGGSPFKRFL 689
V+F M LV+F ++++VV+LGFAM+ +L D D FG L LFK +LG+V+ F F GN+Y L V+YLVV+ +MLLNLLIAVLST+H+KVE AD+E +V+K RI+EHYR+VV + ++P PFNLVQ+I LP V+ R + + T + VG+++FWL L PV GT+LW+ SS++ FV ++ A R +LS GS R+L
Sbjct: 929 VVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDT----FGGTCLTLFKAMLGEVDFFGSFP---GNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILS--LP-VMVRDRSGQGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLFAPFVWHTHFYSK---AQARRGALSVGSLLVRYL 1144
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.060e-32 Identity = 104/296 (35.14%), Postives = 152/296 (51.35%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFV---------------LTRQPAKRDTICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLFVPAAELVNRVPSASTLRDSLSGGSPFKRFLTSLLSLYSLLFPGRESLQSAKRLAKLKAIRLHIGVGGVCALGAPLCLLFLWV 845
V+F M +L++F ++ V++LGF MA L RD D+ FG+ L LFK +LGD + F+VFS G+ Y LLVVYL ++T+MLLNLL+A+LST+HA+V N ++E +V+ R+++HY+LVV D++P PFNL+Q+I + + TR +K C + +G V FW+VL PV I G+LLW+ S +PA + RD+ G S L SL Y ++ P C GAP+ LL LW+
Sbjct: 880 VVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDS----FGESFLDLFKAMLGDTDFFKVFS---GDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGS--KAIGPVVFWVVLGPVAVIGGSLLWMGS-----VLPAMYFWRKHHRLQNKRDNGGGDSKRSMHLWSLFLRYVVIIPCW------------------------CVFGAPVYLLLLWL 1137
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 136 bits (342), Expect = 8.450e-32 Identity = 89/207 (43.00%), Postives = 126/207 (60.87%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFV------------LTRQPAKRDTICREIG-QTVGQVSFWLVLSPVVFIVGTLLWIASS 584
VIF M VL++F ++ VV++GF MA L RD D+ FG+ L LFK + G+ F FS G+ Y +LLVVYL ++TI+LLNLL+A+LST+H+KV+ N D+E + + R+++HY+LVV DI+PAPFNL+Q++ + V TRQ R E G + +G V FW+VL PV + GTLLWI S+
Sbjct: 688 VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDS----FGESFLELFKAMFGETTFFNAFS---GDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRSTSGSQSTRQELNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLWIVST 887
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.670e-29 Identity = 100/296 (33.78%), Postives = 150/296 (50.68%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFV---------------LTRQPAKRDTICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLFVPAAELVNRVPSASTLRDSLSGGSPFKRFLTSLLSLYSLLFPGRESLQSAKRLAKLKAIRLHIGVGGVCALGAPLCLLFLWV 845
V+F M +L++F ++ V++LGF MA RD D+ FG+ L LFK +LGD + F+VFS G+ Y F LLVV L ++T+MLLNLL+A+LST+HA+V N D+E +V+ R+++HY+LVV D++P PFNL+Q++ + + TR +K C + + V FW+VL PV G+LLW+ S +PA + R++ G S L SL Y+++ P C GAP+ LL LW+
Sbjct: 154 VVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDS----FGESFLDLFKAMLGDNDFFKVFS---GDTYDFVATFLLVVGLFIVTVMLLNLLVAILSTSHAQVAENIDREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLVVWPIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGS--KAIEPVVFWVVLGPVAVNGGSLLWMES-----VLPAMYFWRKHHRLQNKRENGGGDSKKSMHLWSLFLRYNVIIPCW------------------------CVFGAPVYLLLLWL 411
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI) HSP 1 Score: 120 bits (300), Expect = 2.820e-26 Identity = 89/201 (44.28%), Postives = 121/201 (60.20%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFVLTRQPAKRDT--ICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLF 599
V++GMA L +F +++ VVILGFAM+ F+L RD T +L F+ +LG+V F+ D G ++ +LLV YLVVMTIMLLNLLIAVLSTAH KVE + V++ R+ HYR VVA D +PAPFNL Q++ LLP + K +T I R VG++ FWL+L P + G +W+ S+ LF
Sbjct: 690 VLYGMASELGQFFVVMGVVILGFAMSFFALFRDVKGETIR--GALLDAFQAMLGEVGLFD---DFVGEKHDLAATVLLVSYLVVMTIMLLNLLIAVLSTAHGKVEEAVL--IRVSRARVYTHYRWVVATDALPAPFNLAQLVV--LLPCKMVDVLFKGNTYPIARR---GVGRIVFWLLLGPGAILGGVFVWLVSTPKALF 878
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 120 bits (300), Expect = 3.030e-26 Identity = 86/219 (39.27%), Postives = 121/219 (55.25%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQII-----------FMKLLPFVLTRQPAKRDTIC------------------REIGQTVGQVSFWLVLSPVVFIVGTLLW 572
VIF M L++F ++LVV++GF MAL + RD ++ FGD +L LFK +LG+ F+ FS G RY +L+VVYL ++T+MLLNLLIA+LST HA+V+ N +V+K RI+ HYR VV D++PAPFNLVQ++ + LL + +R I R + GQ+ +WLVL PV G +LW
Sbjct: 867 VIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVED----FGDTLLGLFKAMLGETGFFDEFS---GGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILW 1078
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.420e-25 Identity = 111/338 (32.84%), Postives = 164/338 (48.52%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIF-----MKLLPFVL----------TRQPAKRDT--------------ICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLFVPAAELVNRVPSASTLRDSLSGGS--PFKRFLTSLLSLY-SLLFPGRESLQSAKRLAKLKAIRLHIGVGG-------VCALGAPLCLLFLWVREPCLQVFQFIARLT-CR 896
VIF M L++F ++LVV++GF MAL RD + FGD +L LFK +LG+ F+ FS G RY +L+VVYL ++T+MLLNLLIA+LST HA+V N + +V+K RI+ HYR VV D++PAPFNLVQ+I + LP+ T +PA + R + GQ +WLVL V G +LW S ++ ++ ++ L G P + + ++ S P LQ + + +++ IGV +C LGAP CL+ W+ P + F + +L CR
Sbjct: 884 VIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVAD----FGDTLLGLFKAMLGETGIFDEFS---GGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHSETERPATDEDGRLFWGNVWEGARHRHRSARRAFGQFVWWLVLGSVAVAGGAMLWSLSGLFYAQYACHSWLSTTDEQNSFFGFLQEGDEEPDEEDTAKDVVVFGSCGSPLWRMLQGVRIV--FRSVLQWIGVVLAWFLIFLLCILGAPCCLVLRWLILPGTEFFSWCWKLAACR 1212
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.770e-25 Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFVLTRQPAKRDT--ICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLF 599
V++ MA L +F +++ VVILGFAM+ F+L RD T +L F+ +LG+V F+ D G ++ +LLV YL+VMTIMLLNLLIAVLSTAH KVE + V++ R+ HYR VVA D +PAPFNL Q++ LLP + K +T I R VG++ FWLVL P + G +W+ S+ LF
Sbjct: 781 VLYSMASELGQFFVVMGVVILGFAMSFFALFRDVKGETLR--GALLDAFQAMLGEVGLFD---DFVGEKHDLAATVLLVSYLLVMTIMLLNLLIAVLSTAHGKVEEAVL--IRVSRARVYTHYRWVVATDALPAPFNLAQLVV--LLPCQMVDLLFKSNTYPIARR---GVGRIVFWLVLGPGAILGGIFVWLVSTPKALF 969
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.890e-22 Identity = 75/200 (37.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFVLTRQPAKRDTICREIGQTVGQVSFWLVLSPVVFIVGTLLWIASSVYTLFV 602
VIF M LVRF +++LVV++GFAM+L L+RD+ + FG+ + LFK LGDV+ F S +LNLL+A+L+ +H+KV+ N +E +V+K R+++ R V D +PAPFN+ Q++F V+ P+ R E Q +GQ W VL + F+ G++LWI S VY LFV
Sbjct: 316 VIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSKS----FGETFVALFKATLGDVDYFTASS-------------------------VLNLLVAILTVSHSKVQENVQREFKVSKARMIQRCRWTVENDWLPAPFNVAQLLFSGQYALVM---PSFRRKRYDEAKQAIGQAVSWFVLGLMAFVGGSILWILSVVYALFV 483
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.990e-22 Identity = 81/232 (34.91%), Postives = 130/232 (56.03%), Query Frame = 3
Query: 3 VIFGMAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGDVEAFEVFSDEAGNRYSFTGNLLLVVYLVVMTIMLLNLLIAVLSTAHAKVEMNADKELEVAKVRIVEHYRLVVALDIIPAPFNLVQIIFMKLLPFVL-------TRQPA-----------------------------KRDTICREIGQTV-GQVSFWLVLSPVVFIVGTLLWIASSV 587
V+F M +L +F +I+L+V+LGF + +SL ++ T +G++ +F+ LG+ + + FS G + +LLVVYLV++TIM+LNLL+AVLSTAHAKV+ NA E +V + R+++HY VV +D +P PFNL Q IF LPF++ +R+P+ KRD ++ + G+++FW +L P+ + G +LW+ S V
Sbjct: 1247 VMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKE----TTAYGEVWKAIFRATLGETDYLDDFS---GTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFA--LPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMISIV 1469 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8356.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8356.1.1 >prot_A-nodosum_M_contig8356.1.1 ID=prot_A-nodosum_M_contig8356.1.1|Name=mRNA_A-nodosum_M_contig8356.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=328bp MAMVLVRFALILLVVILGFAMALFSLLRDADNSTFNFGDIMLLLFKTLLGback to top mRNA from alignment at A-nodosum_M_contig8356:14853..15850- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8356.1.1 ID=mRNA_A-nodosum_M_contig8356.1.1|Name=mRNA_A-nodosum_M_contig8356.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=998bp|location=Sequence derived from alignment at A-nodosum_M_contig8356:14853..15850- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8356:14853..15850- >mRNA_A-nodosum_M_contig8356.1.1 ID=mRNA_A-nodosum_M_contig8356.1.1|Name=mRNA_A-nodosum_M_contig8356.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at A-nodosum_M_contig8356:14853..15850- (Ascophyllum nodosum dioecious)back to top |