mRNA_A-nodosum_M_contig831.7.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 246 bits (627), Expect = 2.400e-72 Identity = 123/206 (59.71%), Postives = 148/206 (71.84%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSNT 620
GGVW NN +HDNH YGFDPHDDSDYL IA N VYNNVNHGIIASKRCNN+KIY+N+VY GG AAGIFLHRS D+ EVYGN I +M G+A+LE+ DIHDN FG+R+ LG NN V++NV + N G+FTY GSD P V GRP +N FY+N I T+T VKIKE++ IT N F+G + +EFN+A WS N+
Sbjct: 217 GGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNS 421
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 229 bits (583), Expect = 1.140e-65 Identity = 113/206 (54.85%), Postives = 146/206 (70.87%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSNT 620
GGVW NN++HDNH Y +ANN VYNN NHGIIASKRCNN+KIY+N+V GG A GIFLHRSSDN EVYGN I++M G+A+LESF+ DIHDN V FG+R+SLG G N+VY+N +C+++GL+TY GSD P+VS+ GRP+ N F +N ++++ VK K ++ V+T N FTG LEF DA+ T WS N+
Sbjct: 239 GGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNS 431
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 232 bits (591), Expect = 3.230e-65 Identity = 116/209 (55.50%), Postives = 147/209 (70.33%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEV-SSDGRPSENFFYDNAISDT--KTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSNT 620
GGVW +N + DN YGFDPHDDSD LTI+NN+VY N NHGIIASKRCNN+KI+ N+VY GG+ A GIFLHRSSD EV+ NV+++MQ G+A++ES+D +I+DN+F N +G+R+SLG G N + NN+ T YGL+TY GSD P+V +S+GRPS+N F N I V IKE + V N FTG S EF D+ T W NT
Sbjct: 405 GGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 226 bits (577), Expect = 3.450e-64 Identity = 117/207 (56.52%), Postives = 143/207 (69.08%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTP-EVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSNT 620
GGVW NN++HDNH YGFDPHDDSDYLT IIASKRCNN++IY N+VY GG AAGIFLHRSSD V+ NV+ DMQ G+A+LES + DI++N F +V FG+R+SLG N V+ N+ E+ + GL+TY GSD P + SDGRPS+N F +N I + VKIKE + TVIT N FTG S LEF DA+ T W NT
Sbjct: 294 GGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNT 488
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 233 bits (595), Expect = 4.020e-64 Identity = 119/205 (58.05%), Postives = 139/205 (67.80%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSN 617
GGVW NNK+HDN YGFDPHDDSDYLTIA N VYNNVNHGIIASKRCNN+KI+EN+V GG AAGIFLHRSSD V+ N I +MQ G+A+LESFD I+ N +G+R+SLG GNN VY N + + YGL+TY GSD P+VS DGRPS N N + D VKIKE + NTF EF ++ T WS N
Sbjct: 657 GGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGN 860
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 218 bits (556), Expect = 7.130e-59 Identity = 110/210 (52.38%), Postives = 139/210 (66.19%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSD--GRPSENFFYDNAISDTKTSVKIKEANKTVITGNTF---TGASRLEFNDAEGTAWSSN 617
GG+W NK+HDN YGFDPHDDSD L IA N V+ N NHGIIASKRCNN+KI+ N VY GG+ A GIFLHRSSD+CEV+GN ++DM+ G+AI+ES IHDNTF NV +G+R+S+G N V NN EC YG++TY G+D PE S D G +N F+ N + + VKI++A V T N F + F D E W++N
Sbjct: 612 GGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNN 818
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 211 bits (538), Expect = 3.730e-56 Identity = 106/210 (50.48%), Postives = 137/210 (65.24%), Query Frame = 3
Query: 3 GGVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSD--GRPSENFFYDNAISDTKTSVKIKEANKTVITGNTF---TGASRLEFNDAEGTAWSSN 617
GG+W N++HDN YGFDPHDDSD L IA N V+ N NHGIIASKRCNN+KI+ N VY GG+ A GIFLHRSSD+CEV+ N ++DM+ G+AI+ES I+DNTF NV +G+R+S+G N V NN EC YG++TY G+D PE S D G +N F+ N + + VKI++A T N F + F D E W++N
Sbjct: 673 GGIWTGNQMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNN 879
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.190e-54 Identity = 100/205 (48.78%), Postives = 132/205 (64.39%), Query Frame = 3
Query: 6 GVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSNT 620
G W NK+HDN YGFDPHDDSD+LT+ +N VY+N HGIIASKRCN + I N+VY G +AGIFL+RSSD+ V GN + D GLA++ESF+ D+ DN F+N +GVRIS+G G N NV+ T Y ++Y G+D P+V GR +N F +N I ++KI +A+ T GN+F A + F+DA T S NT
Sbjct: 35 GDWRRNKMHDNKGYGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNT 239
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 196 bits (498), Expect = 3.200e-53 Identity = 105/205 (51.22%), Postives = 131/205 (63.90%), Query Frame = 3
Query: 6 GVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASRLEFNDAEGTAWSSNT 620
G W NK+HDN YGFDPHDDSD+LTI +N V+NN HGIIASKRCN + I N+VY G +AGIFLHRSSDN V GN + D GLA+LESF+ D+ DNTF+N +GVR+S+G G N NV+ + F+Y G+D PEV GR +N F +N I S+ +KEA+ T NTF A+ + F DA T S NT
Sbjct: 242 GDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNT 446
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 191 bits (486), Expect = 3.830e-51 Identity = 101/209 (48.33%), Postives = 132/209 (63.16%), Query Frame = 3
Query: 6 GVWMNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYENKVYSGGDRAAGIFLHRSSDNCEVYGNVIFDMQGPGLAILESFDTDIHDNTFKNVTFGVRISLGGGNNTVYNNVLEECTNYGLFTYHGSDTPEVSSDGRPSENFFYDNAISDTKTSVKIKEANKTVITGNTFTGASR----LEFNDAEGTAWSSNT 620
G W NK+HDN YGFDPHDDSD+LTI +N VYNN HGIIASKRCN + I N+VY G + +AGIFLHRSSD+ V GN + D GLA+LESF+ D+ +NTF+N +GVR+S+G +N N++ + Y +TY GSD P+V S GR N F N+ S + ++KIKEA+ T N F + F+DA + NT
Sbjct: 275 GDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNT 483 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig831.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig831.7.1 >prot_A-nodosum_M_contig831.7.1 ID=prot_A-nodosum_M_contig831.7.1|Name=mRNA_A-nodosum_M_contig831.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=242bp MNNKVHDNHHYGFDPHDDSDYLTIANNVVYNNVNHGIIASKRCNNLKIYEback to top mRNA from alignment at A-nodosum_M_contig831:253931..256448+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig831.7.1 ID=mRNA_A-nodosum_M_contig831.7.1|Name=mRNA_A-nodosum_M_contig831.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2518bp|location=Sequence derived from alignment at A-nodosum_M_contig831:253931..256448+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig831:253931..256448+ >mRNA_A-nodosum_M_contig831.7.1 ID=mRNA_A-nodosum_M_contig831.7.1|Name=mRNA_A-nodosum_M_contig831.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at A-nodosum_M_contig831:253931..256448+ (Ascophyllum nodosum dioecious)back to top |