mRNA_A-nodosum_M_contig83.49.4 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig83.49.4 vs. uniprot
Match: D7FWR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR4_ECTSI) HSP 1 Score: 369 bits (948), Expect = 8.720e-107 Identity = 272/701 (38.80%), Postives = 383/701 (54.64%), Query Frame = 3
Query: 1011 EEKGAAVVRAQMSVLMVGFYEIIRQVTLHCEERGRLLDRIWSSLNELFEYVLREMTDTVASCERRLADMSKLIHRERQEKERQGSMHRDELQMTEKLLNERWSKKVRQLREREEQHSNLVTTNEETVKRLREWFPSFADYSNSAMASLLPTRPAE----------GEKVLSPQEALEKDLQRIQSAGLWVI-----FSGHGASSTASTLDSSDKNESEASHSDSTNAGGEKDEEGSSD---RSPVGVRLTSAKKGRDELVLTPKVEQLPFSDVFPGPLPAAGLIHQDTATMAQRPSKGDRGSLENREVVTCFRAEKRTRKHGAKAKAGGGARRGGHGRRRRECERKVIAGLMKHIEEVKEEGDELKREVVRAKEEGLRTASTAKEGAKALIQE-CAKAQGMFLSLMADPGPSVGVAFPGLLELLGMSTLTEQISTFRATQP-LGVAGVHYSLVSAARALVAYRREAAGSILSTSTAA------TIAAPAAVYLHSRSMAEFLYESELRRSDKLRAARATLRRLIASLLFWLPLEAAGGGR------SGTTVGVAAGAGASQRPPGFGKLPRDLAGHEKTALQQFQRLLRLRTLRTSRRDATTRDGDEPEGE-DDDEGNASGSKVRDPPASSVISGSS-GGSVSDCFTDAEECLWLRVFGALEIYARPRRTDANRQQQQPTLPDLVPLQRAVSMVEEIFGSD 3011
E + AA +RAQM+VLMVGF+E+IRQVT HC ERGRLLDRIW SLNELFE+VL EM+ TVA CE RL M+ ++ +ER ++E + ++H++ELQ+TE+L+N RWSKKVRQL+++E ++ ++V NE TV L++W P+F Y +S +A +LP P LSPQEALE+DL RI +AGLW + + S +S ++ S ++ A D +N GG G+S R+PV R +A+ G ++ A RT G ++ A +RK++ L++ E + L+ E A+E + + AKE A+ L+Q+ C +A+G+ LSL+ADP P+ FPGLLEL+GM +L +Q+ R++Q LG+AG H +++AA ALVAYR T+ A +++ L R + +FLYE+ELRRS ++ AR+ +RRL+ASLLFWLP + R S GV A A + RPPG+G LPR +AGHEKTAL+QFQ LL + S D ++ G GE D +A S D AS S S GG V D F++ EECLWLRVF A+E +A P RT+ Q PT LVPL +A++ VE+IFG +
Sbjct: 138 EARKAAKIRAQMNVLMVGFFEVIRQVTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRETIHKNELQLTEELINGRWSKKVRQLKDQEVRYGSIVAENERTVATLKQWLPNFETYGDSVLAKVLPPLPLSPPTQQQAAVVSAPPLSPQEALERDLNRIHAAGLWCVRRDXXXXXXXSISDSSMVERSSNSDRSAGSGDLSNRGGR----GTSPMTVRTPVNGRSGTAESGXXXXXXXXXXXRMS----------TAIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTGVAGKRSLA----------------DRKMMDVLVQQGREAALRAEALRNETKEAEERASKVKADAKEHARDLLQQACGRAEGVILSLLADPAPTTPWPFPGLLELVGMKSLVDQVGVIRSSQGVLGIAGCHSCVIAAASALVAYRXXXXXXXXXXXXXXXXXXXXTVPAASSL-LRPRRLGQFLYETELRRSGRVGRARSAVRRLVASLLFWLPPPPSLSARARQLAASAEEAGVTAPAQPTSRPPGYGHLPRSVAGHEKTALKQFQSLLCVSNGEGSNGDGSSPGGFGGRGEIDPSAASAHNSNAGDATASPTESSSGDGGGVQDGFSEIEECLWLRVFAAVESHATPCRTEPR---QGPTPAHLVPLDKAIASVEKIFGGE 804
BLAST of mRNA_A-nodosum_M_contig83.49.4 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI) HSP 1 Score: 175 bits (444), Expect = 2.420e-45 Identity = 116/255 (45.49%), Postives = 154/255 (60.39%), Query Frame = 3
Query: 3336 MHVANPGLPELAVRLLFYRAATSS--HTEGLPSVKGG---RGQLDGI---------------HKTHQGGPKAHQSKGEKAADAGANGAGAGGVSAVGLARAVLEFPLRCDGLEPLVVATASAKGVRELHRRLAFQAKEVVNETEQIIAVIKEAQGMDSSSTGA------LVPAAETAVVKARTSQLRAFETNANTSGNTLDVSRLWFSLRMLTVESALLKTYGGVGLTARAQDAIIQGRRVRMRRVLRALKAASR 4022
MHVA+PGLPE A+R LF++AAT+ LP+ + G RGQ ++++ G + + G+ +G SA GLARA+ FPL C+GL PLV +TA+ R L +++A QAKE + ETE+++A I+EAQG + G VP AE + V+ARTSQLRAF NA+TS + LDVS+LW S RML E+ LL+ YGGVG TARAQDAI QGRRVR+RR+ RA + A R
Sbjct: 1 MHVASPGLPEAALRHLFFQAATTGAPRPSSLPAARAGGDGRGQTTAPATXXXXXXXXXRTSNNRSNAGRSGSFRQSGKSDGXXXXDGET---TSASGLARAIAGFPLACEGLAPLVASTATELSARSLLKQVAHQAKEALEETEKVVASIREAQGTPAGQRGXXXXXXXFVPEAEISAVEARTSQLRAFMINADTSRSVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWR 252
BLAST of mRNA_A-nodosum_M_contig83.49.4 vs. uniprot
Match: A0A835Z723_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z723_9STRA) HSP 1 Score: 181 bits (458), Expect = 2.740e-42 Identity = 157/529 (29.68%), Postives = 225/529 (42.53%), Query Frame = 3
Query: 147 C*QSMEFPQATSRAPRPPSYEPCESYSL-CSRRSMRPH-------PVGVSTAKDLELLGLLPGLAIPNIVGSTIYNNRANRAGHAGSVAASVLSSYIPHGGLREASVGSSLRGENHAYRRQDVSYLQDKPGHGRQIKQGEWSDV--VVPPSKIPQGARVIQTS----------VIKTDDPCY-------------------------QEWYDPAERMWHRIVFPAKRPSNREQVRLLERWMTMMLARHANELDHKRDRHRKKWCTDEGSVTSSAGDDNTRKPPSPKCLDDHPTSPNLDPFAYTRGDDPRGDTDGQSQTAFDGEGVREGAPGQREEKGAAVVRAQMSVLMVGFYEIIRQVTLHCEERGRLLDRIWSSLNELFEYVLREMTDTVASCERRLADMSKLIHRERQEKERQGSMHRDELQMTEKLLNERWSKKVRQLREREEQHSNLVTTNEETVKRLREWFPSFADYSNSAMASLLPTRP------AEGEKVLSPQEALEKDLQRIQSAGL---WVIFSGHGA 1571
C +S P+ R P P +S+ + SR S H PVG+ + DL LLGL+P G I N+ + G AG Y P L + S + A D+S L D+PGHG +K G+WS S++P ARV+++S + T C + W+D +W + FPAK+P NR Q +LERW+T L+R A E + P P + G T G K +VR QM +L++G EI RQVT HC ERGRLLD+IW SLN+LFEYVLREM+ +A + RL D+S+ + ER E+ + + H +L+ T++ L+ +WS+ VR L+ H+ NE + ++ W PSF Y S + LL RP A +S + AL DLQR++ AGL W +++G G+
Sbjct: 14 CTKSTPVPRVPDGTCRTPLVSPIKSHRVHTSRDSGLKHQQSRGAVPVGLKSRADLVLLGLVPD-------GRRIDNSSPTQGGAAGHPLL-----YKPAKPLSVKPLSSLSNPDPTA----DISCLGDQPGHGVLLKAGQWSSGGGSAQTSRLPHDARVVESSPTLGLTAVCMAVTTRPDCQLSNAFCLNFALRSSPLITPRCTPDGERWWDEENGVWREVTFPAKQPGNRAQTVMLERWLTGALSRAARE-----------------------------------SMQARPDGPTV------------GGTGGXXXXG----------------KSVVLVRRQMDLLVLGLGEITRQVTFHCAERGRLLDKIWRSLNDLFEYVLREMSTALADSDGRLTDLSEALEAERAERRARDAQHAHDLRTTKEELSHKWSRVVRDLKGAAAGHAARAKQNEALTELVKRWLPSFDVYKESVLVRLLE-RPEGAPQAARRNPHVSAEHALAADLQRLKDAGLLGGWGVWAGSGS 462
BLAST of mRNA_A-nodosum_M_contig83.49.4 vs. uniprot
Match: A0A6H5JE25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE25_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.070e-27 Identity = 106/276 (38.41%), Postives = 137/276 (49.64%), Query Frame = 3
Query: 2229 MSTLTEQISTFRATQP-LGVAGVHYSLVSAARALVAYRREAAGSILSTSTAATIA----APAAV-YLHSRSMAEFLYESELRRSDKLRAARATLRRLIASLLFWLPL-------EAAGGGRSGTTVGVAAGAGASQRPPGFGKLPRDLAGHEKTALQQFQRLLRLRTLRTSRRDATTRDGDEPEGE-DDDEGNASGSKVRDPPASSVISGSS-GGSVSDCFTDAEECLWLRVFGALEIYARPRRTDANRQQQQPTLPDLVPLQRAVSMVEEIFGSD 3011
M +L +Q+ R++Q LG+AG H +++AARALVAYRRE PAA L R + +FLYE+ELRRS ++ AR+ +RRL+ASLLFWLP A S GV A + RPPG+G LPRD ++ G GE D +A S D S SGS GG D F++ EECLWLRVF A+E +A P RT+ Q PT LVPL +A++ VEEIFG +
Sbjct: 1 MKSLVDQVGVIRSSQGVLGIAGCHSCVIAAARALVAYRREXXXXXXXXXXXXXXXXXXXVPAASSLLRPRRLGQFLYETELRRSGRVGRARSAVRRLVASLLFWLPXXXXLSSPRARQLAASAEEAGVTVPAQPTFRPPGYGHLPRD---------------------------GSSAGGFGGRGEIDPSAASAHNSNAGDATGSPTESGSGDGGGGQDGFSEIEECLWLRVFAAVESHATPCRTEPR---QGPTPAHLVPLDKAIASVEEIFGGE 246 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.49.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig83.49.4 >prot_A-nodosum_M_contig83.49.4 ID=prot_A-nodosum_M_contig83.49.4|Name=mRNA_A-nodosum_M_contig83.49.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1305bp MEFPQATSRAPRPPSYEPCESYSLCSRRSMRPHPVGVSTAKDLELLGLLPback to top mRNA from alignment at A-nodosum_M_contig83:573158..589140- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig83.49.4 ID=mRNA_A-nodosum_M_contig83.49.4|Name=mRNA_A-nodosum_M_contig83.49.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=15983bp|location=Sequence derived from alignment at A-nodosum_M_contig83:573158..589140- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig83:573158..589140- >mRNA_A-nodosum_M_contig83.49.4 ID=mRNA_A-nodosum_M_contig83.49.4|Name=mRNA_A-nodosum_M_contig83.49.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=3915bp|location=Sequence derived from alignment at A-nodosum_M_contig83:573158..589140- (Ascophyllum nodosum dioecious)back to top |