mRNA_A-nodosum_M_contig8262.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8262.3.1
Unique NamemRNA_A-nodosum_M_contig8262.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8262.3.1 vs. uniprot
Match: D7G4D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.710e-20
Identity = 123/441 (27.89%), Postives = 184/441 (41.72%), Query Frame = 3 
Query:  402 WKVFHSAGGERKRCFGDLLPYIIVIAILQLIPFSTSGVSATAGLKQGRSVTVIGSLSDPDNEPIDTLSLEALKDLQLGERSAPFLFGSPELGNYGTNVSNLAWSVSYSGVSSSSMTDGGGPNLRIYGSGYTVEQDGIGKGTYAISTCLVVSEDGGD-YTVNTC-EGVQVEIEPLEIVVEGRQYNVKWSQDECSGP-TEYAVFNERVSYKNRSLTLESWEGTFTESEMVEGTTVTALCANIFESIIEACIFEVGSHVYVGDWNPADYQDCDD-DSDPVVSMATVEV-----QGKDGTLLASDEFKAAASMFAEVVAGSGTISSRQQLALVLGIFSRMSCMKIGVGTAYYPETVVIVSISRVVLVLWGLLFVVGLVV--YLREICVGTKVFIPSTAWDWFAVGAREC--LRDEGSSCSN--RPAHHNYATRYGLGKPWVNDRD 1679
            W VF S+   R      +LP ++  A   +I F+TSGVSA+ G  +G  V V+G                              L GS     Y  N                 +  G    + ++G+ Y   +      T  I+ C+ VSE  GD + ++ C EG+ V+       V+     V     ECS       + N+ V    R  T E  +GT   +         A C++I ESIIE+C++E G  +Y GDWN     +C + +  P +S+  ++      QG D   L        A+M AE+ AG+G ++SRQQL  VLG   R+  M   V TAY P  VV + IS  V V+  L  V+  +   +++    G   F+P +  +W A  ARE   L  +GS  S   +P   +Y+  Y  G     D +
Sbjct:   63 WDVFKSSKTRRWTTLA-VLPVLLGGAASMVIDFTTSGVSASIGHTEGAEVPVLG------------------------------LVGSDVRHEYKVNP----------------VGTGSEQGVYVFGNKYDTPE------TVDITFCVEVSEIEGDAFAISECREGLIVDKSVKSFYVKSVITGVIVDLQECSVLYVSIPLGNQGVGIVERDFTFEDTDGTEVAAA--------ATCSSITESIIESCVWESGGILYFGDWNIEGAGECGEVEFPPFMSILAIDYGERVEQGNDTAALL-------AAMTAEIFAGTGLLTSRQQLVDVLGAIVRLESMAWDVQTAYDPLNVVEIGISAWVPVVLLLALVLPAMAWGFVKWHIRGKYFFLPVSPAEWSACAARELSELGKDGSRSSGTAKPLDEHYSKVYAFGSVVGTDEE 435
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8262.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4D9_ECTSI2.710e-2027.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8262contigA-nodosum_M_contig8262:13979..17387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1907
Hectar predicted targeting categorysignal anchor
Exons6
Cds size1578
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8262.3.1prot_A-nodosum_M_contig8262.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8262 14182..17261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.7697535-UTR-A-nodosum_M_contig8262:13978..141811680870161.7697535-UTR-A-nodosum_M_contig8262:13978..14181Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8262 13979..14181 +
1680870161.8631134-UTR-A-nodosum_M_contig8262:17261..173871680870161.8631134-UTR-A-nodosum_M_contig8262:17261..17387Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8262 17262..17387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.7842438-CDS-A-nodosum_M_contig8262:14181..142171680870161.7842438-CDS-A-nodosum_M_contig8262:14181..14217Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8262 14182..14217 +
1680870161.798292-CDS-A-nodosum_M_contig8262:14627..152071680870161.798292-CDS-A-nodosum_M_contig8262:14627..15207Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8262 14628..15207 +
1680870161.8124716-CDS-A-nodosum_M_contig8262:15385..155181680870161.8124716-CDS-A-nodosum_M_contig8262:15385..15518Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8262 15386..15518 +
1680870161.8253357-CDS-A-nodosum_M_contig8262:15705..158031680870161.8253357-CDS-A-nodosum_M_contig8262:15705..15803Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8262 15706..15803 +
1680870161.8385606-CDS-A-nodosum_M_contig8262:16380..165711680870161.8385606-CDS-A-nodosum_M_contig8262:16380..16571Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8262 16381..16571 +
1680870161.8516088-CDS-A-nodosum_M_contig8262:16721..172611680870161.8516088-CDS-A-nodosum_M_contig8262:16721..17261Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8262 16722..17261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8262.3.1

>prot_A-nodosum_M_contig8262.3.1 ID=prot_A-nodosum_M_contig8262.3.1|Name=mRNA_A-nodosum_M_contig8262.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=526bp
MTYGLETQMDVKAVNTLVTIIASFLVLFLGCVLQKCLTRRFWERSSKDTP
ADMLVSEGFDGLKEFAWKVFHSAGGERKRCFGDLLPYIIVIAILQLIPFS
TSGVSATAGLKQGRSVTVIGSLSDPDNEPIDTLSLEALKDLQLGERSAPF
LFGSPELGNYGTNVSNLAWSVSYSGVSSSSMTDGGGPNLRIYGSGYTVEQ
DGIGKGTYAISTCLVVSEDGGDYTVNTCEGVQVEIEPLEIVVEGRQYNVK
WSQDECSGPTEYAVFNERVSYKNRSLTLESWEGTFTESEMVEGTTVTALC
ANIFESIIEACIFEVGSHVYVGDWNPADYQDCDDDSDPVVSMATVEVQGK
DGTLLASDEFKAAASMFAEVVAGSGTISSRQQLALVLGIFSRMSCMKIGV
GTAYYPETVVIVSISRVVLVLWGLLFVVGLVVYLREICVGTKVFIPSTAW
DWFAVGARECLRDEGSSCSNRPAHHNYATRYGLGKPWVNDRDRIITQPMS
WTRVQHKYEGGAINGEKPTTWKTLL*
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mRNA from alignment at A-nodosum_M_contig8262:13979..17387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8262.3.1 ID=mRNA_A-nodosum_M_contig8262.3.1|Name=mRNA_A-nodosum_M_contig8262.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3409bp|location=Sequence derived from alignment at A-nodosum_M_contig8262:13979..17387+ (Ascophyllum nodosum dioecious)
AAAGTGTCCCCTGGCCCTTCCCATCCTCCAGCATTGGCCCAACTGACTGT
CGATTCTGCTGTTTGTATCACTGTATCTAATACTGCATTTACCAGGAACT
ATATTAAAAGAGGGCGCCACGCCAGCAGCAAGTGGCAAGGTTCAAAGAGC
GCCCAACCTTGAGCCAAACGTGCTCTGGCCAACTCGAACTCAGGGCTGGT
AATATGACTTACGGCTTGGAAACCCAGATGGATGTGAAGGTAAGCGGATG
ATATCGAAAGCGGAGTTGTCTTCGTATAAACCATAGGCAGTTGCTTCGTG
AAAATGAAATATATATGGGCGAAAGAGGCGATAGACTAAAATCTTAGCCA
TTGGACTTTTAGAAAATCTTGGCCAGGCGAGTGTTACAGTCTATATGATA
TGTTAGAAAATGTTGGAAGTTATGTCTGATGACGGTAATGGACGAAACGG
TTGACAGTCGGAAATAGGTCTGCTGAAAGCAATAGTGTGTCCCGCTGGGG
ACATGATTTGTCATGTGGCGTCCGGATGAGACATACATGCAGACCACACG
TGCGCCCCACTGCACCCCATTGCCCCCCTTACGTCTTAACCTGGGAATTT
AAATGGATACTCTGCACCCCCTCTCTCCATCTGTTTTTGGAATACGCAGG
CTGTAAACACCTTAGTGACTATTATCGCGTCGTTCCTGGTCCTCTTTCTG
GGCTGCGTTCTACAGAAATGTTTGACTCGGAGGTTCTGGGAAAGGTCGTC
AAAGGATACCCCCGCGGACATGTTGGTGTCTGAAGGTTTTGATGGTTTGA
AGGAATTCGCCTGGAAAGTATTCCACTCCGCGGGTGGCGAGAGAAAGCGA
TGTTTTGGCGATCTACTGCCGTACATCATTGTCATCGCTATATTGCAACT
CATACCGTTTTCCACATCCGGAGTCTCAGCCACTGCTGGCTTAAAGCAAG
GCCGTTCAGTTACGGTGATAGGCTCACTGTCGGACCCTGACAATGAGCCC
ATAGACACTTTAAGCCTTGAAGCATTGAAAGACCTGCAGCTTGGGGAGAG
ATCCGCTCCATTCCTCTTCGGGAGTCCGGAGCTGGGCAACTACGGTACTA
ATGTCAGTAACTTGGCGTGGAGCGTGTCCTACTCCGGTGTGTCCAGCAGC
AGCATGACGGATGGCGGGGGCCCGAACCTGAGAATCTATGGGTCCGGCTA
TACCGTGGAACAGGATGGCATAGGGAAGGGTGAGTGAGCATACGTCGCGG
AAAGGAAAAGTGCTCGTAATTCATAGCCCTTTGAGGAGGAGATCGATCGC
GTTTATCTCCCACGAAAAGCATTGCACGTGAGTTCAGAAACATTTCTCGA
CCCGTGGGCGGTAACGCGCCCCTTCCTTCTGCCCCCTAAAATTGTTGGAT
TACTCAGGTACGTATGCCATTAGCACTTGTCTCGTCGTGAGCGAAGATGG
CGGAGACTACACCGTGAACACATGCGAGGGCGTGCAGGTGGAAATCGAGC
CACTCGAAATTGTTGTCGAAGGCCGTCAATATAATGTCAAGTGAGAGATC
AGACGGCAGGGGGTACAGAGAGTTTTTTTATCCGTCCAAACCATACGTTT
GATGCCTCGCTGCCGAGGAGAAACCAGCATAAACGCACGTTTAATGCCCT
GCGTGGTGGAGGGATGGATAAGTCATTCAACATTTATTATTCCCTTTCTT
CGCTGGACATTTCGCTGGACATTTCAGATGGTCTCAAGACGAATGCAGCG
GCCCCACCGAGTATGCAGTGTTTAACGAAAGGGTTTCTTACAAAAATCGG
AGTTTGACTCTCGAGTCGTGGGAAGGTGAGTGATCCACCGGGAGAGCACT
GTGGTCAAACGTCCCCCCAGTGAGATACGATTGAGAAGTAAACGGTCCTC
GGTAAATGGAATGTTTTGGTGAGATGAAGAACTGCGGGTTTTTTAAGAAC
GGGAGCTTTTAGATTTTGTCGTTTGGACCACTGGGCGGATTCGATCCACC
AATGGCTCAAACGAAAGGCCCTGTCGAGAGAAAGAGCTCGTCCCATTTTC
CAGCTCGATCCGTCACTTTGTGGGATTGTGAGAGCATTTTCTCGGATTTT
TCCGCAATTACGGCGAACTGCGCTGTTCACCAGAATCGACCCTAGGTGGA
TTTTAGAACTGTTGGTAGACATCTCGCCCATTATTGAGCAATGCATCTCT
GTGATCGCATCAGCAAAGGGCTTTCGTTTGAGCCCACGGCGGATCAAATC
CTCCCAGCAGTTCAAAAGTAAAGAAGAAATAAGCCCCCGTTCTTAAAAAA
TTGACGTTCTTCATCTCACCAAAACATAGCAAAATGTCGTTATTTTTGAC
ACCTCTGTGGCCATCTAACATCTCCCTCCCCCTATGTCGCTAACTCATTA
AGGCACTTTCACTGAGAGTGAAATGGTCGAGGGTACCACCGTAACAGCCT
TGTGTGCCAACATCTTCGAGTCTATAATCGAAGCATGCATCTTTGAGGTT
GGGAGCCACGTATATGTCGGAGATTGGAACCCTGCGGACTACCAAGACTG
CGACGACGATTCCGATCCTGTAGTATCCATGGCGACCGTCGAGGTGAGAA
TTCCAGCGATAGGGCAATAGATTAAATCGAATAATTTGTCTCTCATAGGA
TAAAATATGCACATGTTTTATATCACTCTGCCATCCTGGGAACGATTCTT
ATGATGTTGTTACCCCATCCACCCCTGCCTTTGGATCACTCAGGTGCAAG
GGAAAGACGGGACGCTTTTAGCCAGCGATGAATTCAAGGCTGCCGCTTCG
ATGTTCGCTGAGGTTGTTGCGGGCTCAGGAACAATATCCTCTCGCCAGCA
ATTAGCCTTGGTTCTGGGTATTTTTTCGCGAATGTCGTGCATGAAGATTG
GGGTCGGGACAGCATATTACCCTGAAACGGTTGTGATCGTCTCGATCTCC
CGAGTTGTACTCGTGCTTTGGGGGTTGCTGTTTGTGGTCGGACTTGTGGT
TTATCTCCGCGAGATCTGTGTTGGAACAAAGGTTTTCATACCTTCGACGG
CCTGGGACTGGTTTGCGGTCGGAGCCCGCGAGTGTCTGCGTGACGAGGGT
TCGTCTTGTTCCAACCGCCCAGCCCATCACAACTATGCCACCAGATACGG
CTTGGGAAAACCTTGGGTGAATGATCGCGACAGAATCATTACGCAGCCCA
TGAGTTGGACTAGGGTGCAGCACAAATACGAGGGAGGAGCGATCAATGGT
GAAAAACCGACTACATGGAAAACTCTCTTGTGACACAAAAAATCGACTCG
AGAGTAACCTTGAAGGCGTTGTAGTAGTTAGGGGTCTCGAGCACTCGAAC
TATTGCGTACAATTCGCGAAGGGTGGAATATGTTGTCGGCTGTAATTTTC
AGAAGAAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8262:13979..17387+

>mRNA_A-nodosum_M_contig8262.3.1 ID=mRNA_A-nodosum_M_contig8262.3.1|Name=mRNA_A-nodosum_M_contig8262.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at A-nodosum_M_contig8262:13979..17387+ (Ascophyllum nodosum dioecious)
ATGACTTACGGCTTGGAAACCCAGATGGATGTGAAGGCTGTAAACACCTT
AGTGACTATTATCGCGTCGTTCCTGGTCCTCTTTCTGGGCTGCGTTCTAC
AGAAATGTTTGACTCGGAGGTTCTGGGAAAGGTCGTCAAAGGATACCCCC
GCGGACATGTTGGTGTCTGAAGGTTTTGATGGTTTGAAGGAATTCGCCTG
GAAAGTATTCCACTCCGCGGGTGGCGAGAGAAAGCGATGTTTTGGCGATC
TACTGCCGTACATCATTGTCATCGCTATATTGCAACTCATACCGTTTTCC
ACATCCGGAGTCTCAGCCACTGCTGGCTTAAAGCAAGGCCGTTCAGTTAC
GGTGATAGGCTCACTGTCGGACCCTGACAATGAGCCCATAGACACTTTAA
GCCTTGAAGCATTGAAAGACCTGCAGCTTGGGGAGAGATCCGCTCCATTC
CTCTTCGGGAGTCCGGAGCTGGGCAACTACGGTACTAATGTCAGTAACTT
GGCGTGGAGCGTGTCCTACTCCGGTGTGTCCAGCAGCAGCATGACGGATG
GCGGGGGCCCGAACCTGAGAATCTATGGGTCCGGCTATACCGTGGAACAG
GATGGCATAGGGAAGGGTACGTATGCCATTAGCACTTGTCTCGTCGTGAG
CGAAGATGGCGGAGACTACACCGTGAACACATGCGAGGGCGTGCAGGTGG
AAATCGAGCCACTCGAAATTGTTGTCGAAGGCCGTCAATATAATGTCAAA
TGGTCTCAAGACGAATGCAGCGGCCCCACCGAGTATGCAGTGTTTAACGA
AAGGGTTTCTTACAAAAATCGGAGTTTGACTCTCGAGTCGTGGGAAGGCA
CTTTCACTGAGAGTGAAATGGTCGAGGGTACCACCGTAACAGCCTTGTGT
GCCAACATCTTCGAGTCTATAATCGAAGCATGCATCTTTGAGGTTGGGAG
CCACGTATATGTCGGAGATTGGAACCCTGCGGACTACCAAGACTGCGACG
ACGATTCCGATCCTGTAGTATCCATGGCGACCGTCGAGGTGCAAGGGAAA
GACGGGACGCTTTTAGCCAGCGATGAATTCAAGGCTGCCGCTTCGATGTT
CGCTGAGGTTGTTGCGGGCTCAGGAACAATATCCTCTCGCCAGCAATTAG
CCTTGGTTCTGGGTATTTTTTCGCGAATGTCGTGCATGAAGATTGGGGTC
GGGACAGCATATTACCCTGAAACGGTTGTGATCGTCTCGATCTCCCGAGT
TGTACTCGTGCTTTGGGGGTTGCTGTTTGTGGTCGGACTTGTGGTTTATC
TCCGCGAGATCTGTGTTGGAACAAAGGTTTTCATACCTTCGACGGCCTGG
GACTGGTTTGCGGTCGGAGCCCGCGAGTGTCTGCGTGACGAGGGTTCGTC
TTGTTCCAACCGCCCAGCCCATCACAACTATGCCACCAGATACGGCTTGG
GAAAACCTTGGGTGAATGATCGCGACAGAATCATTACGCAGCCCATGAGT
TGGACTAGGGTGCAGCACAAATACGAGGGAGGAGCGATCAATGGTGAAAA
ACCGACTACATGGAAAACTCTCTTGTGA
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