mRNA_A-nodosum_M_contig8223.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE) HSP 1 Score: 133 bits (334), Expect = 5.420e-33 Identity = 65/131 (49.62%), Postives = 89/131 (67.94%), Query Frame = 1
Query: 1 PSSESHTEAICAKIVQDVVNGRAVAFKHSSVSDIHGLHVLPVGAVEGRKLRIIHDLTFAAHA-YRSSVNDKTDFSVAPPCELGHVFADVCRQIMYLRQRHGVVAHVMLCRIDVKDAFRQIPVDPLHAAKLG 390
PS+ H + I K+V DV+ GRA+ F + +I G+ V P+G ++ K RIIHDLTF + R+SVN TDF AP C LGHV +D+ ++++YLRQ HGV +++CRIDVK+AFRQIPVDP A+ G
Sbjct: 681 PSALLHRDRITDKVVSDVILGRALVFDVRFIREILGVRVSPLGVIDKPKFRIIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVDPSRASVFG 811
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.760e-21 Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 1
Query: 1 PSSESHTEAICAKIVQDVVNGRAVAFKHSSVSDIH---GLHVLPVGAVE--GRKLRIIHDLTFAAHAYRSSVNDKTDFSVAPPCELGHVFADVCRQIMYLRQRHGVVAHVMLCRIDVKDAFRQIPVDPLHAAKLGYAFDEYAVMDLFLQFGWRSSPG 456
P H K+++D+ GR + H++++ ++ LH+ PV V+ K R++HDL+ H SVN+ T F AP GH+F + +I LRQ +++ ++DVK AFRQ+ +D + LGY +++ V+DL LQFGWRSSPG
Sbjct: 52 PLEPRHVPVFDCKVLEDIALGRCIVM-HAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHG--ESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPR-KRILISKMDVKSAFRQLALD-VRGPLLGYRYNDLVVVDLRLQFGWRSSPG 203
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.640e-18 Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 109 LHVLPVGAVE--GRKLRIIHDLTFAAHAYRSSVNDKTDFSVAPPCELGHVFADVCRQIMYLRQRHGVVAHVMLCRIDVKDAFRQIPVDPLHAAKLGYAFDEYAVMDLFLQFGWRSSPG 456
LH+ PV V+ R++HDL+ H SVN+ T F AP E GH+F + +I LRQ +++ ++DVK AFRQ+ +D + LGY +++ V+DL LQFGWRSSPG
Sbjct: 7 LHINPVFVVDEGAANFRVVHDLSALLHG--ESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPR-KRILISKMDVKSAFRQLALD-VRGPLLGYRYNDLVVVDLRLQFGWRSSPG 120
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Match: A0A6H5K0Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y6_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 5.810e-18 Identity = 51/162 (31.48%), Postives = 78/162 (48.15%), Query Frame = 1
Query: 10 ESHTEAICAKIVQDVVNGRAVAFKHSSVSDIHGLHVLPVGAVEGRKLRIIHDLTFAAHAYRSS---VNDKTDFSVAPPCELGHVFADVCRQIMYLRQRHGVVAHVMLCRIDVKDAFRQIPVDPLHAAKLGYAFDEYAVMDLFLQFGWRSSPGFLDVVVSSLE 486
+ H + K+ DV R + + ++ SD+ G+ V P+GAV G+K+RII+D +F + S +N T S P C G ++ LR R ++ + DV AFR + + P HA Y + V DL L FGW +SPG + S+ E
Sbjct: 85 DEHQTQVWEKLCDDVKRYRCIVLRKANASDVRGIRVAPLGAVPGKKVRIINDFSFDPSTSKGSKGGLNKDTIMSGVPRCLCGEALPAFLEELTSLRVRWPD-KRILAAKADVTSAFRNVRISPDHAHYFCYVIGDVLVADLRLTFGWAASPGLWGELASAAE 245
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 1.860e-5 Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 328 IDVKDAFRQIPVDPLHAAKLGYAFDEYAVMDLFLQFGWRSSPGFLDVVVSSLE 486
+DVK AFRQ+ +D + LGY +++ V+DL LQFGWRSSPG+ + ++E
Sbjct: 110 MDVKSAFRQLALD-VRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAIE 161
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Match: A0A1X7ST08_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7ST08_AMPQE) HSP 1 Score: 52.8 bits (125), Expect = 3.510e-5 Identity = 41/166 (24.70%), Postives = 77/166 (46.39%), Query Frame = 1
Query: 1 PSSESHTEAICAKIVQDVVNGRAVAFKHSSVSDIHGLHVLPVGAVEGRKL----RIIHDLTFAAHAYRSSVNDKTDFSVAPPCELGHVFADVCRQIMYLRQRHGVVAHVMLCRIDVKDAFRQIPVDPLHAAKLGYAFDEYAVMDLFLQFGWRSSPGFLDVVVSSLE 486
P + ++ + + +++ GR + +S+ D H +HV VG V + R+I DL+F SVND D ++ C L + + +++ + +++ +ID+K A+R IPV P LG+ ++ +D L F S+P V + +E
Sbjct: 76 PLAYQQSQVVGEYLQRELAAGRMLGSLPASILDCHPVHVNRVGVVPKGHIPGQWRMITDLSFPEGP---SVNDGVDSTL---CSLEYTSVNRVAEVIA-----DLGVGMLMAKIDIKSAYRMIPVHPADRPLLGWKWEGQVFVDSALPFCLCSAPKIFTAVANVIE 230 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8223.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8223.1.1 >prot_A-nodosum_M_contig8223.1.1 ID=prot_A-nodosum_M_contig8223.1.1|Name=mRNA_A-nodosum_M_contig8223.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=162bp PSSESHTEAICAKIVQDVVNGRAVAFKHSSVSDIHGLHVLPVGAVEGRKLback to top mRNA from alignment at A-nodosum_M_contig8223:17416..17901+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8223.1.1 ID=mRNA_A-nodosum_M_contig8223.1.1|Name=mRNA_A-nodosum_M_contig8223.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig8223:17416..17901+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8223:17416..17901+ >mRNA_A-nodosum_M_contig8223.1.1 ID=mRNA_A-nodosum_M_contig8223.1.1|Name=mRNA_A-nodosum_M_contig8223.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig8223:17416..17901+ (Ascophyllum nodosum dioecious)back to top |