mRNA_A-nodosum_M_contig820.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig820.2.1
Unique NamemRNA_A-nodosum_M_contig820.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: D8LBS0_ECTSI (eIF-5a domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS0_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 4.900e-103
Identity = 153/163 (93.87%), Postives = 157/163 (96.32%), Query Frame = 1 
Query:    1 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEESG 489
            TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVV RNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYP+GFG EIK  F++G TL VTVMAAMGHEQIV+YKEESG
Sbjct:   38 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEESG 200
[Close]
BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 1.570e-102
Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 1 
Query:    1 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEESG 489
            TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVV RNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYP+GFG EIK  FE+G TL VTVMAAMGHEQIV+YKEESG
Sbjct:   92 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFEEGLTLCVTVMAAMGHEQIVTYKEESG 254
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: A0A835Z7R2_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R2_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.900e-79
Identity = 116/162 (71.60%), Postives = 142/162 (87.65%), Query Frame = 1 
Query:    1 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEES 486
            T AT++ LN+YDFT +DAGASHT P +AGQIRKGGYIVIKG PCKV NVSTSKTGKHGHAKANFTA DIFTGKKLED++P++H TSVP V R +YQLLDISDDGF SLLTE GDTKDDL+LP +P+GF  +++  F+ GKTL+VTV++AMGH+Q+++YKE++
Sbjct:    4 TSATDEALNNYDFTSSDAGASHTFPMDAGQIRKGGYIVIKGRPCKVANVSTSKTGKHGHAKANFTAIDIFTGKKLEDIVPTSHATSVPNVARVDYQLLDISDDGFLSLLTESGDTKDDLKLPGFPEGFDEQLRTEFDAGKTLIVTVVSAMGHDQVMAYKEDT 165
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: A0A7S2UU65_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU65_9STRA)

HSP 1 Score: 230 bits (587), Expect = 7.990e-72
Identity = 110/156 (70.51%), Postives = 135/156 (86.54%), Query Frame = 1 
Query:   19 KLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEES 486
            KL+D+ F   ++GAS TIP EAGQIRKGG+IVIKG PCKVVNVSTSKTGKHGHAKANFTA DIFTGKK ED++P+THTTSVP V R EYQL+DISDDG+ SLLT+ GDTKDDL LPT+P+GF  EI+  F++GK++V+TV++AMG +Q+VS KE++
Sbjct:    7 KLDDFHFDTGESGASLTIPMEAGQIRKGGHIVIKGKPCKVVNVSTSKTGKHGHAKANFTAIDIFTGKKYEDIVPTTHTTSVPNVSRAEYQLIDISDDGYLSLLTDSGDTKDDLVLPTHPEGFADEIRAAFDEGKSMVLTVLSAMGTDQVVSMKEDT 162
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: A0A8K1CGM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGM3_PYTOL)

HSP 1 Score: 228 bits (582), Expect = 3.970e-71
Identity = 109/154 (70.78%), Postives = 128/154 (83.12%), Query Frame = 1 
Query:   25 NDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEES 486
            +DY F  TDAGAS T P EAGQI+K G+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R EY LLDIS+D F SL+ E GDT++D++LP+YPDGF  EI++ FEDGK LVVTV+ A G EQI+S KE++
Sbjct:    3 DDYTFESTDAGASETYPMEAGQIKKNGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRKEYTLLDISEDDFVSLMDESGDTREDVKLPSYPDGFANEIRSDFEDGKQLVVTVLKACGTEQIISKKEDT 156
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: W7U6Y6_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Y6_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.410e-69
Identity = 108/155 (69.68%), Postives = 131/155 (84.52%), Query Frame = 1 
Query:   22 LNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEES 486
            + DYDF+GT AGAS   PSEAGQI+KGGYI+IKG PCKVVNVSTSKTGKHGHAKANFTA DIF GKK+EDV+P+THTT VP V R+EYQLLDI +DGF SLL E+G T+DDL+LP YP+GF  EI   ++DGK+L V+V++A G +QI++YKEE+
Sbjct:    9 IEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
[Close]
BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: M4B4L4_HYAAE (Eukaryotic translation initiation factor 5A n=18 Tax=Peronosporaceae TaxID=4777 RepID=M4B4L4_HYAAE)

HSP 1 Score: 224 bits (571), Expect = 1.870e-69
Identity = 108/160 (67.50%), Postives = 131/160 (81.88%), Query Frame = 1 
Query:    4 MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEE 483
            MA E++  D+ F  TDAGAS T PSEAGQIRKGG+I+IKGHPCKVVN+STSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP V R EY LLDI+DD FCSL+ + GDT++D++LPT+P+ FG EI+  F DGK LV+TV+ A G EQI++ KE+
Sbjct:    1 MAEEEQ--DFTFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNMSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGDTREDIKLPTFPETFGEEIRADFNDGKQLVLTVLKACGTEQIIAKKED 158
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: A0A5D6XTX1_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTX1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.050e-68
Identity = 107/153 (69.93%), Postives = 125/153 (81.70%), Query Frame = 1 
Query:   28 DYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEES 486
            DY F  TDAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R EY LLDISDD F +L+ + GDT+DD++LPT+PD F  EI+  F+ GK LVVTV+ A G EQI+S KE++
Sbjct:    5 DYTFESTDAGASDTYPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVARAEYTLLDISDDDFVTLMDDGGDTRDDIKLPTFPDNFADEIRADFDSGKQLVVTVLKACGIEQIISKKEDT 157
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: A0A6A3TKK1_9STRA (Eukaryotic translation initiation factor 5A n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TKK1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 3.960e-68
Identity = 107/163 (65.64%), Postives = 133/163 (81.60%), Query Frame = 1 
Query:    1 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEESG 489
            TMA E + +D++F  TDAGAS T PSEAGQIRKGG+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP V R EY LLDI+DD F SL+ + G+T++D++LPT+P+ F  EI+  F+DGK LV+TV+ A G EQ+++ KE+ G
Sbjct:   17 TMA-EHEEHDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFVSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQVIAKKEDLG 178
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BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Match: K3WUI8_GLOUD (Eukaryotic translation initiation factor 5A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI8_GLOUD)

HSP 1 Score: 219 bits (559), Expect = 1.160e-67
Identity = 103/154 (66.88%), Postives = 127/154 (82.47%), Query Frame = 1 
Query:   25 NDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMGHEQIVSYKEES 486
            +DY F  TDAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R+EY LLDI+DD F SL+ + G+T++D++LPT+PD F  EI+  F+ GK LV+TV+ A G EQ++S KE++
Sbjct:    3 DDYTFESTDAGASDTFPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRSEYTLLDITDDDFLSLMDDSGETREDIKLPTFPDNFAEEIRADFDAGKQLVLTVLKACGTEQVISKKEDT 156
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig820.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBS0_ECTSI4.900e-10393.87eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDL5_9PHAE1.570e-10294.48eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7R2_9STRA1.900e-7971.60Eukaryotic translation initiation factor 5A n=2 Ta... [more]
A0A7S2UU65_9STRA7.990e-7270.51Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A8K1CGM3_PYTOL3.970e-7170.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7U6Y6_9STRA1.410e-6969.68Eukaryotic translation initiation factor 5A n=2 Ta... [more]
M4B4L4_HYAAE1.870e-6967.50Eukaryotic translation initiation factor 5A n=18 T... [more]
A0A5D6XTX1_9STRA2.050e-6869.93Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A6A3TKK1_9STRA3.960e-6865.64Eukaryotic translation initiation factor 5A n=3 Ta... [more]
K3WUI8_GLOUD1.160e-6766.88Eukaryotic translation initiation factor 5A n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig820contigA-nodosum_M_contig820:53932..56837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBS0
Preferred nameEIF5A2
PFAMsEFP_N,eIF-5a
Model size1132
Max annot lvl2759|Eukaryota
KEGG koko:K03263,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0002181,GO:0002182,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003746,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005737,GO:0005739,GO:0005777,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006413,GO:0006414,GO:0006415,GO:0006417,GO:0006446,GO:0006448,GO:0006449,GO:0006452,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006913,GO:0006915,GO:0007204,GO:0007275,GO:0007276,GO:0007283,GO:0007548,GO:0007568,GO:0008079,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008360,GO:0008406,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010509,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010608,GO:0010628,GO:0010660,GO:0010661,GO:0010662,GO:0010663,GO:0010665,GO:0010666,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0017069,GO:0017070,GO:0019222,GO:0019538,GO:0019725,GO:0019953,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0022626,GO:0030003,GO:0030425,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031503,GO:0031967,GO:0031975,GO:0031984,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032984,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0035262,GO:0036477,GO:0042127,GO:0042175,GO:0042221,GO:0042579,GO:0042592,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043243,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045137,GO:0045138,GO:0045184,GO:0045595,GO:0045597,GO:0045727,GO:0045787,GO:0045901,GO:0045905,GO:0045948,GO:0046661,GO:0046907,GO:0047485,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051028,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051302,GO:0051480,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060491,GO:0060548,GO:0061458,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0080090,GO:0090068,GO:0090342,GO:0090343,GO:0090598,GO:0097066,GO:0097067,GO:0097159,GO:0097447,GO:0097458,GO:0098589,GO:0098771,GO:0098805,GO:0098827,GO:0120025,GO:0120038,GO:1900247,GO:1900249,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903270,GO:1903272,GO:1990904,GO:2000112,GO:2000377,GO:2000379,GO:2000765,GO:2000767
Exons4
Evalue5.14e-107
EggNOG OGsCOG0231@1|root,KOG3271@2759|Eukaryota
Ec32 ortholog descriptionTranslation protein SH3-like domain
Ec32 orthologEc-27_002930.1
Descriptioneukaryotic translation initiation factor
Cds size489
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig820.2.1prot_A-nodosum_M_contig820.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig820 53935..56197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870146.9965775-UTR-A-nodosum_M_contig820:53931..539341680870146.9965775-UTR-A-nodosum_M_contig820:53931..53934Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig820 53932..53934 +
1680870147.066417-UTR-A-nodosum_M_contig820:56197..568371680870147.066417-UTR-A-nodosum_M_contig820:56197..56837Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig820 56198..56837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870147.0105548-CDS-A-nodosum_M_contig820:53934..540661680870147.0105548-CDS-A-nodosum_M_contig820:53934..54066Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig820 53935..54066 +
1680870147.02622-CDS-A-nodosum_M_contig820:54586..547821680870147.02622-CDS-A-nodosum_M_contig820:54586..54782Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig820 54587..54782 +
1680870147.0382621-CDS-A-nodosum_M_contig820:55471..555661680870147.0382621-CDS-A-nodosum_M_contig820:55471..55566Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig820 55472..55566 +
1680870147.0514371-CDS-A-nodosum_M_contig820:56131..561971680870147.0514371-CDS-A-nodosum_M_contig820:56131..56197Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig820 56132..56197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig820.2.1

>prot_A-nodosum_M_contig820.2.1 ID=prot_A-nodosum_M_contig820.2.1|Name=mRNA_A-nodosum_M_contig820.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=163bp
MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVST
SKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDIS
DDGFCSLLTEEGDTKDDLQLPTYPDGFGAEIKNGFEDGKTLVVTVMAAMG
HEQIVSYKEESG*
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mRNA from alignment at A-nodosum_M_contig820:53932..56837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig820.2.1 ID=mRNA_A-nodosum_M_contig820.2.1|Name=mRNA_A-nodosum_M_contig820.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2906bp|location=Sequence derived from alignment at A-nodosum_M_contig820:53932..56837+ (Ascophyllum nodosum dioecious)
ACCATGGCCACCGAGGACAAGCTGAACGACTACGACTTCACCGGTACCGA
TGCCGGCGCTTCGCACACCATCCCCTCCGAAGCCGGACAGATCCGTAAAG
GTGGCTACATTGTTATCAAGGGACACCCCTGCAAGGTGCGAACAAATGGA
CCTCTGCTGTAATAATTGTAGTACAGTAGTAAGCATTGTGAAAAACGATA
TATTTATCAGTATATTAGGAGGGACCTACCTCTCCCTTTCGCCTGCCCCT
TTACCTTTATTTCACCATCCATAATGGTCCATTCACCGATCTCTCTTGCC
CTTACTTGACTTGACTTGACTTGTAATGCGGCATTTTGATCGGGTTTGCC
ACGAAGAACCCCAAAGAGAATGTGATGTACTGTTTTATCACCGTGTACAC
AGCTTGAGGCGGAGTGGCCTTGATCTCCGCGTGATGGGTCCACTTACCGA
TCTTTCTTGCCCTTGCTTGACTTAGAATGCGGCATTTTGACCATTTTGAT
GAGGTTTGCCACGAAGAACCCCGAAGAGAGTCAAGTACTGGCTTTTATCG
CCGTTTACACAGTTTGAGGCGGAGTGGCGTTGATCTCCGCGTGTTCTCTT
TTGGTGCTCGGCCGATTCCATTGCATTCCGTCGGAATATGTCTTGTCCGT
TCCAGGTGGTGAACGTTTCGACCTCGAAGACAGGCAAGCACGGCCACGCG
AAGGCTAACTTCACCGCCACGGACATTTTCACCGGCAAGAAGCTCGAAGA
CGTCATCCCCTCGACCCACACCACGTCCGTTCCGGTCGTGCGCCGCAACG
AGTACCAGCTCCTGGACATCTCCGACGACGGTTTCTGCTCGCTCCTCACC
GGTGAGCTCGACGCGGGGCGCATCTCACGGCACCGAATGGCATACTGCTT
TTAATTCCAGCATGGTGCAGAAGGCCATTTGGTACTTACATGCTCTGCCT
GCTGTATGCTGTTGTTAGTCCCCTCTACCCCCGTTCTCCTGTTCAGTATA
ATTTACTTCAGTAGAGCGTCAAGTAGATAGAAAAGCCACCCTCTATTATA
TAATATTGGAAGAGCCTCATGTCCGCTCATAAAAGAAGATTTAAAAAACC
GCTGAAAGTATGTAGGTAGGGTCATCACATATTATACATAGCAGAGTATG
GATCAACCGGGTAAGGTTGCCAATCCTGCTCGTAAGTCAGCTGAAAAGGA
AAAATGAAAATGTTCTGCTCTTCGCCTGAGGATTTGGTCTCGCGAGACGG
GTTCGGCTGTCCCGTCCCGCGTCAGCGTGCTTACTCTCCACAGTCAGGCT
GAATCTGGTCTGATGAGCATTGAAACGGCCCCTGTCGTGACAAAGTTGCG
CGTCTATCTACTAATAGTAATATATATATTTTTAACATGTCGTGTAGTGG
TGCAACAAAATACTTGAGACGGGTACTGTAGAGTAGTGACGAGCTATCGC
ACGTCAAGCTTGTCGATGAGACTCGAAAATCGGTAATTCTGACACGCTCT
TCGCCTATATGCTGGCGTGTGATTGGGACACCACTCGCAGAGGAGGGTGA
CACCAAGGATGACCTCCAGCTTCCCACCTACCCCGATGGCTTCGGCGCTG
AAATCAAGAACGGCTTCGAAGATGGAAAGACCCTGGTGAGATCTTCTTCG
AGTTTTTGCTGTGTAGCGAAGTGTATAGTAGAGTTAATAACCCAACTGAA
ATCGGGCGTGTATCCTTCTCTCGTTGATCATCGCAATATGAAATGGATTC
AACGCTGGTAACTACAGCAAACCTAGTTCTTGTCAACGCTCGGCTGAAAC
GTTCGCACAAGTCGGAAAAAAAACAAACGGAAATAATGCGCGCGCGCACT
CTTAAACGAGAATTCTACTCTGTATCTAATATCTAATTATTAATATTAAT
CGCACTATCCGTCAAAATACTGAACTATCCCTGGTGTCACGTCTTTTTTT
TGTGTTCTTTTTTTTTTACCAACGGTTGGTTGAATTTTGCCCTTTTTACT
GTTCTTCACCACGGTACTAATAATAATGGGGAAAAATCTAGTACAGTATA
GCCTGGAAGGTGATGGTGACTTGAAGGAACCTCTCGTGCGCTTTCTGTTT
TGATATGATCATGATCCCTTGGTATCTCAAAACATTTGTTCTCATTTCGT
GCTGTCCCACACGGCTACCGCCATTGTCATGGTGATGGTAATGCCCCCAG
GTTGTGACCGTGATGGCTGCCATGGGCCACGAGCAGATCGTCAGCTACAA
AGAAGAGTCCGGCTGAACCTAACCTGCTCTGCCGGGGTCTTGTTTTTGGC
GAGTGATGGAAGTGTGCTGGAGACGGTTGTTTTTGAGGATTGTGGCAACG
GCCCTGTGACACATTTGCCAACCTGGCGGAGACCGACCTTGCCTCCCGAT
GTTGCGAGTAGGCGTTACGCGGGTGAGGTTGGTAGGTTTTGGCGTGGCCG
GCAGCCGCCGCTGAAATTGACGTGGTGGTTTATATGAGGGTGATAATATG
GGGGGGCGGGTGAGGCGACAGGAGGAGGAGGGAAATGGAAAGTGAGAGCG
CGCTGGAAAAAGGAGTGTGCGAAACAAAATGCCAAACAAAGGCAACAAAT
TTCACCCAAAAAGCAAGGTTACAGAGAAGAAACGGAAAGCAAGTGAAGGT
ACGACTCGCGTAAAAGGTGGTTGCTGCACAACTTGTATTTTTTTCCCTAT
GTGCATCCGATTTTATTGAGTATAGAAATCCCGATAAATATGTACGAAGC
GCCGCATCAGAGGCCCCGGTCAGAGAGGGGAGGCATTTTAGGGAGTAACG
GGGGCATGTGAAAGGAAAAGGAGAGAGGGGGGGAAAGGATCAGTTCTTGG
TGTCAAGGGTACTCGCTCAGAGGGATATAAATCGCTTGGTACGGATGTTC
AACACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig820:53932..56837+

>mRNA_A-nodosum_M_contig820.2.1 ID=mRNA_A-nodosum_M_contig820.2.1|Name=mRNA_A-nodosum_M_contig820.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig820:53932..56837+ (Ascophyllum nodosum dioecious)
ATGGCCACCGAGGACAAGCTGAACGACTACGACTTCACCGGTACCGATGC
CGGCGCTTCGCACACCATCCCCTCCGAAGCCGGACAGATCCGTAAAGGTG
GCTACATTGTTATCAAGGGACACCCCTGCAAGGTGGTGAACGTTTCGACC
TCGAAGACAGGCAAGCACGGCCACGCGAAGGCTAACTTCACCGCCACGGA
CATTTTCACCGGCAAGAAGCTCGAAGACGTCATCCCCTCGACCCACACCA
CGTCCGTTCCGGTCGTGCGCCGCAACGAGTACCAGCTCCTGGACATCTCC
GACGACGGTTTCTGCTCGCTCCTCACCGAGGAGGGTGACACCAAGGATGA
CCTCCAGCTTCCCACCTACCCCGATGGCTTCGGCGCTGAAATCAAGAACG
GCTTCGAAGATGGAAAGACCCTGGTTGTGACCGTGATGGCTGCCATGGGC
CACGAGCAGATCGTCAGCTACAAAGAAGAGTCCGGCTGA
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