mRNA_A-nodosum_M_contig8197.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8197.1.1
Unique NamemRNA_A-nodosum_M_contig8197.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8197.1.1 vs. uniprot
Match: D8LQV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV1_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.580e-57
Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 3 
Query:  117 GVTELVLSIMAGETEDSSSLLGISIMAFAEIVGSVLVLWRWRRAGTAPAGARGGAS-RQAEQLQEDAKCSFCVGLISLAVGGCLVLERLWWWADSVTGICLAVYIMREGVHSMWEAREQFVAHLDGDEGLRLVGITNREFPREGEE 551
            G TE VLSI+AGE EDSSSLLGISIMAFAEIVGS+LVLWRWR+        RGGAS R++EQLQEDAKCS CVGLISLAV   LVLERL  WADS TGICL++YI+ EG+ S+WEAR+QFVAHL+GDEGLRLV + +     + EE
Sbjct:   48 GATEFVLSIIAGEDEDSSSLLGISIMAFAEIVGSLLVLWRWRKG---MGNDRGGASHRKSEQLQEDAKCSLCVGLISLAVVAALVLERLVSWADSATGICLSLYIVYEGLMSVWEARQQFVAHLEGDEGLRLVPLMHERLLLDKEE 190
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BLAST of mRNA_A-nodosum_M_contig8197.1.1 vs. uniprot
Match: A0A7S2G252_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G252_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.950e-6
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 3 
Query:  309 DAKCSFCVGLISLAVGGCLVLERLWWWADSVTGICLAVYIMREGVHSMWEAREQF-VAHLDGDEGLRLVGITNREFPRE 542
            DA+CS+CV +ISLA    L  + ++ WAD V G+ +A+Y M++G   + E+ E+  +     DE   L+    R  P E
Sbjct:    2 DARCSYCVAVISLAALVALAADGVFNWADGVMGLVVAIYTMQQGYFQIRESNEKLNMRQALADEKAHLLKRPTRGVPEE 80
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BLAST of mRNA_A-nodosum_M_contig8197.1.1 vs. uniprot
Match: A0A7S2UWE3_9STRA (Transmembrane protein 163 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWE3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.570e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:  117 GVTELVLSIMAGETEDSSSLLGISIMAFAEIVGSVLVLWRWR 242
            G+ E V S MAGE+EDS S++GI+ MA  E  GS LV WRW+
Sbjct:   48 GLLEFVFSYMAGESEDSVSIMGIASMAIIEAAGSALVAWRWQ 89
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQV1_ECTSI1.580e-5769.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2G252_9STRA6.950e-635.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2UWE3_9STRA5.570e-557.14Transmembrane protein 163 n=2 Tax=Fibrocapsa japon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8197contigA-nodosum_M_contig8197:20113..26405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1127131.WEISSC39_00840
PFAMsCation_efflux
Model size551
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000465
EggNOG OGsCOG0053@1|root,COG0053@2|Bacteria,1V9B6@1239|Firmicutes,4HJTJ@91061|Bacilli
DescriptionCation efflux family
Cds size408
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870139.4446-UTR-A-nodosum_M_contig8197:20112..202551680870139.4446-UTR-A-nodosum_M_contig8197:20112..20255Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8197 20113..20255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870139.455916-CDS-A-nodosum_M_contig8197:20255..202621680870139.455916-CDS-A-nodosum_M_contig8197:20255..20262Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8197 20256..20262 +
1680870139.4743185-CDS-A-nodosum_M_contig8197:20828..209861680870139.4743185-CDS-A-nodosum_M_contig8197:20828..20986Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8197 20829..20986 +
1680870139.4866161-CDS-A-nodosum_M_contig8197:25495..255671680870139.4866161-CDS-A-nodosum_M_contig8197:25495..25567Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8197 25496..25567 +
1680870139.4983966-CDS-A-nodosum_M_contig8197:26234..264051680870139.4983966-CDS-A-nodosum_M_contig8197:26234..26405Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8197 26235..26405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8197.1.1prot_A-nodosum_M_contig8197.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8197 20256..26405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8197.1.1

>prot_A-nodosum_M_contig8197.1.1 ID=prot_A-nodosum_M_contig8197.1.1|Name=mRNA_A-nodosum_M_contig8197.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
MAGETEDSSSLLGISIMAFAEIVGSVLVLWRWRRAGTAPAGARGGASRQA
EQLQEDAKCSFCVGLISLAVGGCLVLERLWWWADSVTGICLAVYIMREGV
HSMWEAREQFVAHLDGDEGLRLVGITNREFPREGEE
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mRNA from alignment at A-nodosum_M_contig8197:20113..26405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8197.1.1 ID=mRNA_A-nodosum_M_contig8197.1.1|Name=mRNA_A-nodosum_M_contig8197.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6293bp|location=Sequence derived from alignment at A-nodosum_M_contig8197:20113..26405+ (Ascophyllum nodosum dioecious)
CAGGCGTGGAATAGTCGCCTCAAGACCATGTTTCGCATTCTTGAGGAGGC
GGCGGGCGGTTGGGGTCAACACCCCGCCCAACACGCCGTCCTGTCCGGCT
ACATCTCGGTCGTCACGGGGTGACCGAGCTTGTCCTGTCCATCATGGCCG
GTGAGAGTGAAAATCCCCTGCCAGCAGCTCTACTTTTGAAATGTGCGTCT
CACATCAGACCCTCCATCCTCCCATGCTTTGAAAAACAACGTCTACAAAA
TACAGAATGGTCGTGAGCGATGGTGCAGAAGGTCACTCGCGGTCTCGTTT
CGAGGTTGTTTTTGTGTCACTTTCGTGCGATCCCATCTCATCTCCTATCT
GTCATCTGTCAGACGGGGGAGGATGAATCGATTTAACTGCACGACATCGT
CGCGATTCATCAGTTATCTGCCGTCAAATGATCTGCCAGTCTTTTGATAA
GTATTGACAGAGGCCGTCCGAGGGTATCTACGGCGACGCCCTTTGATATC
GAAAACCGAACGGCGCGCGCGCCTGTACGCACACACAAAAACACAATCAC
CCGTTGAGGACCATAGTTTCGTTTCGATCGAAGTTATTGGAAATAGCTTT
TGGCGTCGTGGGGGGGGGGGGGGTAATCTGTCGACCCCGCGTGTTACGAC
GTTATTGAAATTGATACTGTACAGTTGAGCTCTCGAAATATTTGTTTGTG
AAATAACACACTCCAGGCGAGACCGAGGACAGCAGCTCGTTGCTGGGTAT
CTCCATCATGGCGTTCGCGGAGATCGTGGGCAGCGTGCTGGTGCTGTGGC
GTTGGCGGAGAGCGGGGACTGCGCCGGCGGGGGCGAGGGGAGGCGCCAGC
CGACAGGCGGAGCAGCTTCAGGAGGTACACGCTAAAGACACATGAAATAT
ACATGAGAGCATGTCAAGGACCTTTGCAACGCCGACCACGTTGTTGACAC
ACGCAGCGGCTCGGCGAGGAGAGAAAAAGGGGGCATCCCCTGATGTAATC
CCTTATCCCCTTCTTCAAACCGTGGGGTGGAGAGAAGTTGGCTGGCATAT
AATAACGAGAACGGGTTGGGGTGGCGTTGGATGGGGGAGGGGGGCGACTG
GCTATGCAAAAGCCGCAAAGTATGGACAAAAAATATGACTATGTATTGAC
TACGTTTTCGGCGATAGATTGAATTGCGCCGAAGGAAACAAGAGAACAGG
AGGCCTGACCTCATTTTTCACGGTTACTATTACTATTACTATTACTATTA
CTATTACTATTACTATTACTATTACTATTACTATTACTATTACTATTACT
GTTACTGTTACTGTTACTACTACTATTACTATTACTACTACTAATACTAA
TACTATTACTATTACTATTACTATTACTATTACTATTACTATTACTATTA
CTACTACTAATACTATTACTAATACTATTACTATTACTATTACTATTACT
ATTACTACTACTATTACTACTACTATTACTATTACTATTACTATTACTAT
TACTACTACTATTACTATTACTATTACTATTACTACTACTATTACTATTA
CTATTACTATTACTATTACTACTATTACTATTACTATTACTATTACTATT
AATAGAGACAGCACAAGACTCTCTTGTACTATAACTATTGCTATTACTAC
TACTAGTCTATTACTGGTCTATGGAGTGAAAGTAACGTGCTACGGGGTGG
GTGGAGTTATGCGGGCGGGAGAGGGAGAAGGTTTTATAGCGTCATCGTTG
GCTTTTTTCTCTCCTCTCCCCGCCTTGGTGTGATGTCTGCGCAGGTGTAC
TTTGCGGCGTCCATCGCCTTCATGACGGCGTCGCTGGGGGCCATGCTGCT
CCACACGAGCGTCCAGAACCTGTGTGAGTCTTGATTGGCTCTCTCTCGCG
AGTGTAGTTGCCATCACGATCGTGTAGAACATCCTTTCAAGGCACCGAGG
AGTTTTTTTTTTAATACTACTTGCTGTTGCTGTTGCTGTTGAGGAGACCG
GTATAGGGGGGAGGGGAGGGTTTTCGATAGCCGGGATAGCACAGGTTGGC
GGAGCTCATCATTTTTATCCCCGGCAGAATCTCTCACCTTCCACCTTATA
GCGTCTGACACGACCGACGAGTGGTGTGTTGTTAGTTCATCATCTGTGTT
GATGCTGCATGATGGTGTTGCTACTACTGCGTGCAATATACCCTTTGGCC
TATGCAGCAACTATACGCATAGTCTATACTATATACTAAAAACACAACGT
CACGATAAAGTCCCTTCCTCCGAGGTGTTTTCAGCACGTGTTTTTGAACT
GGTGCTTGGTACTGGTTCGTTACACGTAGCATATTTTCACGCAATTCACG
CTTCGACGTCTCAATCAAAACCTGCTGCTCCTGCTGCTGCTGCTGATCCA
CGAGCAAAATGAGTATTCTCAAATAGAAGCCATAGAAAAAATACGCTCAT
ACACACAGAAAATATTCCTATTTTTTCTGTTGAATAAAATGCAAGTGAAA
AACAAAACAAAACTCCGCCGCGCGATAATATATCTCTATACTGTATCTTG
TGTATCTTGTGTATCTTGTGTGGGTGCGGTATCCAGTGGATCAGGAATCG
AGCGGGAGCGCCACCGCGAGCATCATGGTGTCGGCCTACGGGGCGACGTG
TAGCTTCCTCCTGTGGTGGTACAAGAGGCACTACGGAAACGTGCTGCGAA
GCATGGTGCTCTTGGCGGTGAGGCCGGACATTCCAACTATGTCATCTATT
GATTCTCAATTATTTTATCTAACTTATTTCATACTAGTATATCTTATCTA
CTATGCTGTGTCTCAGTACTCGTACTTGTGCTGCCCTGCTGCCGTAATAC
CAGTACTTAGTATATTGGTGTATCGTTAAAACTGCCGGTACTGGCAATAA
CACTTTTTGTATTAACAGCATGTGCGTACTGTAGTACCGACGACTTGTTT
CAATTCTGAGAGTAGCTCAAGGGGTATAGCGTGCCCCGCGAACGCTGCCT
ATGTAAACAGGCGTTCTGCGGCTTTTACTTTCGCCCTCTTTTCCTCTCTT
TGTTTGGGAGGTTTTGAAGGCGAAGACGAGAAGCCACAAAATTTTAGTAC
GAAATATAAGAGAGAAAAACGAAAAGCATGAACTGTAGCTTATAGTATTA
ATAGCGTAACTTTTTACCCCCGCCCCCGGAAAAGTGGCGCAAGAAACGCC
TCTATTCAGCAAATCCTGTTTCGCAGTTGGGCGTGAATACCTTGTACCTG
TAGCTCGAGTGTGTTTCGAAGGAGCAATGATTGCGTCAGCAGAGCGATGA
ATGAGGTTTTCGTCAAGGAGGACCAGCGGATCGCGATGAGGGGATAGGGA
ATAAATAGGATGTGTGACTGGTTGTGGGAGGGTTTGGACGTGTTGTGCGT
TGTCATTGAATGTTCGAATTTCCTTATCCTTGTCGAAGCGCCTTGAACAC
ATGTACATTGTAAGGTACAAGAGAGTTTTCTGTAGATATGTTTTCCCTGT
TTTCACCATAGCAGCAGAGATTTTTGTGAAAACTATAATACGCGCTTTAA
CAGTATACTCTGTTATATCATAGCATAGACTACACCGCTGTTGGACGTAG
TAAGCAGCATGGTGTTTCGTCTTTACGAGTGATAACACAAAAAGGACGGT
AATAATGTGTGGAAACCCCGACTACGACTGGAGACTTATATCACCTCTAC
ACCTGTAGCAATAGTGCACGCCTGGCGACGCGCGGACCTTCGTCAACCCA
ACGTGCAGCGCCAGCGCGAGGTTAAGTGAAGTTGTATAGTAATTACGTGT
GCGATTTGCTTTGTTTTGCCTCGTTGCTGTTGTTTCTAAGTGTTTTTCTT
CCTGTGATATACCGTAGGGAGTCGGTATAATGATGCCGCTCCCTGTGGCT
GTTTACCTCTTTCCTTATTTGATTTGATTACTGTTTTTCCTTTCCCTCCT
CCTTTATTTTATTCCGCTGTGTGGCGCACTCGTTGTCCTTGTCCTTGCTT
TGTCTTCTATCTGGGTTGTCTTGCACTACTTATATAAGTATATGGTTGCC
TTTCTTGCCCTACGCGTATTATATGTGGTTGCCCTGGTTTATTTCGTTTT
TTGTTCCTTGGTTTTCCCTCTGAATCCTTCCTGCGATGATGTCCTTTAGG
CTTCTTCCCCGCTTTCTTCATATCTGCTTTCTTCCCTGTTGTATGTCTTA
TTTTGTTTTGTTTTGTTTTTCCCGACCGTGTTCGTCCCCGATTTGTTTTG
GTGTAAATTCTCTATCTTGTGATACAGCTGGATTCGTAGCGGACCAGTTG
ATAATGTAGAGATAAACAACAACGTGTGCGACTTCGTGCCATTTTTGGTG
TTTTGTTTTTTAATTTGTCTTCTTCCTGCGATATAGGTGAGCCTGGTATG
GGTTCTGCTCCTCTTTCACATTTTTTGATAGTTAACCCATCGCGATGCTT
CTTGTGTCTGTATACCTCATTCTTTTATTTCCTTTGATTGTCGTCTCCTT
TTCTTCACCTGTGTTTTTTAATTTCGCTGTGTGTTGCATCCGTTGCCCTT
GCCCTTGTCTTCATGCCTGGGTTGTATTCCACGCACTTATAAGGCTACCT
TCCTGCAGTTTTTATGCGGTTGCCTCAATTTTGTTTCTACTGCCTGTGTT
TTTTGTTTGCGTTTTCTATTTTATCGCGATGTCCTTTACTTTGGCTACTT
TTCTTGTCCGTTATCTTCTGTCTGCTTTTTCCCTGCTTATCTCCGATTTC
CGGTTTGATTTGGTTTGGTCCCGTCTATCTTGTGATCACGGCTGGATTCG
TAGTGGATCAGTTAATGTGAGATAAACACTAATGGTAGTACACACAGGAT
TCCCGTCGGATTGGTTTTGGTCCCCTTGCTTTCCCTCAGTGATAACCGTA
CTACTCTGTATTCTAACCTCTGGCTCTCTCTTACGCGTACACTCCACTTT
TAAATCTTAAAGTTGTTGTCTTACTCCCCTTTACGGTATATGTAGTGTAT
TGTACTCTTTAATCGCTGTAATGTATCCTTTTGGTAAAATTCAATCATTG
GTTGACGAGTTGTAAGATTGCTGAACTTGCATCGCGATAAAAAAAGGAAG
GCGTGAACCGGGGAGAGATGGGAAGATCCTTGGTGACCACAGGCAGGATG
GTAATGATGACGTCCATCGGCTATAAGTGAGATACAAAAACAAAACAACA
AAAGCAGGGTACTGTAGTATTCTCTATAAATAGTATTGCTCTCTTATCTC
CCTCCAGCTCTTCATTAATTACTGCACTCGCTACTTTTTTCTAGTAGTAG
TGTAACATCCAGATCTTAACTTAACTCCCTTAAAGCCGCCGCCGCGTCAC
CCCTGCGCGTGTCTTCTCTGTCAACATGTAAAGGACGCCAAATGCTCTTT
CTGCGTAGGTTTGATCTCGCTCGCTGTAGGTGGGTGCCTGGTGCTCGAGC
GCCTGGTGAGAGAAGATCCCCGCCCTCGAGAGGGACGGATTGTATTGGCC
CCACTCAGGGACTGGAAGAGTCAACGTCGTTTACTTGTTTTATTTTGTCA
CGTGGCAGTAAAGCTCCATTAATATTTATAGTGTTGACACGACAGTAAAG
CTTCTAGAGAGGGACCCAAGCAAGAAAACAAAACATACTCTGCTGTAGCA
CAATGTTGTACGCCGAATGTGCCATTCTGTTCGTTGTATGCATTGTCAGT
GTGTGTGCCATGGTGGAGAATGGCGGTTTAATCGGAAAAAAGCACGTGTA
ATGTTTTTTTTTTGCGTTACGTGGGTCCCTAGAGCTCCGGATGCTTAACG
CCGCGTACATGCGCTGGTTCATCTCGAAACTTGAGCGACAGAACAATAAA
AACGGTTGGCGGCCACGTACTTGAGTAGTGTAAAATACCTTGCATTGTTT
GTAGTCAGTTGTGACACCCGACAAATCCAAGTCCCGTGAGGTTGGTTTGA
AACACCCCCATCCCTCCATATTCCCTCTTTTTCGTCGTAGAGCCCACATA
CCCTCTACACTCTTTATCCCTGTATACCCCCTACCCCACAAGGTATACAG
TACCTTTTCTACCGTGTACCCCCAATACTGTACCCTCTTTGCCGTCTCTC
TCTCTCTCTCTCTCTTACACAGTGGTGGTGGGCGGATAGCGTAACCGGGA
TTTGTCTAGCCGTCTACATCATGCGTGAAGGAGTCCATAGCATGTGGGAG
GCGCGAGAGCAGTTCGTGGCGCATCTGGACGGCGACGAAGGGCTCAGATT
GGTGGGTATCACTAATAGGGAGTTTCCTCGGGAGGGGGAGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8197:20113..26405+

>mRNA_A-nodosum_M_contig8197.1.1 ID=mRNA_A-nodosum_M_contig8197.1.1|Name=mRNA_A-nodosum_M_contig8197.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig8197:20113..26405+ (Ascophyllum nodosum dioecious)
ATGGCCGGCGAGACCGAGGACAGCAGCTCGTTGCTGGGTATCTCCATCAT
GGCGTTCGCGGAGATCGTGGGCAGCGTGCTGGTGCTGTGGCGTTGGCGGA
GAGCGGGGACTGCGCCGGCGGGGGCGAGGGGAGGCGCCAGCCGACAGGCG
GAGCAGCTTCAGGAGGACGCCAAATGCTCTTTCTGCGTAGGTTTGATCTC
GCTCGCTGTAGGTGGGTGCCTGGTGCTCGAGCGCCTGTGGTGGTGGGCGG
ATAGCGTAACCGGGATTTGTCTAGCCGTCTACATCATGCGTGAAGGAGTC
CATAGCATGTGGGAGGCGCGAGAGCAGTTCGTGGCGCATCTGGACGGCGA
CGAAGGGCTCAGATTGGTGGGTATCACTAATAGGGAGTTTCCTCGGGAGG
GGGAGGAG
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