mRNA_A-nodosum_M_contig8.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8.7.1
Unique NamemRNA_A-nodosum_M_contig8.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8.7.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 5.350e-27
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 2 
Query:  101 VNDEAGNLYKFKASAEKLESVRQAVAEKLKMPKDAILLKYEDGDGDHIVFTGDDNLHEAVDMARLSNAPALKLMASRKLPTLPEDTND 364
            VND+ GNLYKFKASAE+L+ V QAV+EKLKMPKDAILLKY+D DGD IV +GDD+L EAVDMAR S+ PAL L+A+ KL TL E  ++
Sbjct: 3040 VNDDEGNLYKFKASAERLDRVLQAVSEKLKMPKDAILLKYQDDDGDDIVLSGDDSLLEAVDMARASSKPALVLVATLKLHTLDEHDDE 3127
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BLAST of mRNA_A-nodosum_M_contig8.7.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.160e-25
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 2 
Query:  101 VNDEAGNLYKFKASAEKLESVRQAVAEKLKMPKDAILLKYEDGDGDHIVFTGDDNLHEAVDMARLSNAPALKLMASRKLPTLPEDTND 364
            VND+ GNLYKFKASAE+L+ V QAV+EKLKMPKDAILLKY+D DGD IV +GDD+L EAVDMAR S+  AL L+A+ KL TL E  ++
Sbjct: 1167 VNDDEGNLYKFKASAERLDRVLQAVSEKLKMPKDAILLKYQDDDGDDIVLSGDDSLLEAVDMARASSKLALVLVATLKLHTLDEHDDE 1254
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6N9_ECTSI5.350e-2769.32Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K5J8_9PHAE1.160e-2568.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:9304..10259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6N9
PFAMsCBS,IQ,MyTH4,Myosin_head,PB1
Model size373
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.65e-14
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size183
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870075.6694858-UTR-A-nodosum_M_contig8:9303..93391680870075.6694858-UTR-A-nodosum_M_contig8:9303..9339Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8 9304..9339 +
1680870075.6840177-UTR-A-nodosum_M_contig8:9606..97601680870075.6840177-UTR-A-nodosum_M_contig8:9606..9760Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8 9607..9760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870075.7091663-CDS-A-nodosum_M_contig8:9760..98251680870075.7091663-CDS-A-nodosum_M_contig8:9760..9825Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 9761..9825 +
1680870075.7273107-CDS-A-nodosum_M_contig8:10141..102591680870075.7273107-CDS-A-nodosum_M_contig8:10141..10259Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 10142..10259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.7.1prot_A-nodosum_M_contig8.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8 9761..10259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8.7.1

>prot_A-nodosum_M_contig8.7.1 ID=prot_A-nodosum_M_contig8.7.1|Name=mRNA_A-nodosum_M_contig8.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MPKDAILLKYEDGDGDHIVFTGDDNLHEAVDMARLSNAPALKLMASRKLP
TLPEDTNDASV
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mRNA from alignment at A-nodosum_M_contig8:9304..10259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8.7.1 ID=mRNA_A-nodosum_M_contig8.7.1|Name=mRNA_A-nodosum_M_contig8.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at A-nodosum_M_contig8:9304..10259+ (Ascophyllum nodosum dioecious)
CCGCCTACCATGACGGCCGTGGGGGCTCTGAAAGAGGTGAGAGTTCTATA
TTAATATTAGTGTATGTCCAGCTAGAATTAAAAAGAGAAGGGAAAGGGAA
AATGGTGGTGCTATTTGAAGCTCTTCTCGCGGTCGGAAAACCGCTGCATA
CCTCTCTGTTGTGACCTCTTTGACTGGCTGATTTTCTACGAGACGATTAG
GTGGCGTTCACCCATCGCGCTAATAATAGGCATGGCCCGGCAGAGGGTTG
ATTCGTTTTTTTGTTCTTCACGCCTGCTTGGACGAAAACGTGGCACATCG
CAGATGCACGAGAACAAGTATCTGCACCTACCCGTGGTGGACGAGGGGCA
AACCGGAGGGGCTTTAGGTGAACGACGAGGCGGGTAATCTATACAAGTTC
AAGGCGTCCGCCGAGAAGCTTGAGAGCGTGCGTCAAGCCGTGGCCGAGAA
GCTCAAGATGCCCAAGGACGCCATCCTGCTCAAGTACGAGGACGGCGATG
GCGATCACATCGTTTTTACCGGGTAAGTGGACGGGGACGTGTTTTTGTGG
GAGTCGACCGGTCTCTTGAGGAGCACCTTAGTACGTAGGAAACGTCATCA
TATTGAAGACTGGGAAGCATACGAGGTGGGAGCAAAAGCTCTGCCGCGAT
TGACTGTACCGTTGGGCACCAGGCATGATCTGGCTGTTAATGCGAGGTTC
TGCGGTGGTGCCCGACGTGAACCCTTTTAAGCCCAAATTAACCTCTTGAT
GCTTCAGGCTCTATCTAGTCTCAAGGCTCTATTGATATTATTAATAGTAA
AAATAGTATAAACATGTTACGCCGCTCTGTGCAAGCAGGGACGATAACCT
CCACGAGGCGGTGGACATGGCGAGGCTTTCCAACGCGCCCGCGCTGAAGC
TCATGGCGTCACGCAAGCTGCCAACGCTGCCAGAGGACACCAACGACGCT
TCTGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8:9304..10259+

>mRNA_A-nodosum_M_contig8.7.1 ID=mRNA_A-nodosum_M_contig8.7.1|Name=mRNA_A-nodosum_M_contig8.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig8:9304..10259+ (Ascophyllum nodosum dioecious)
ATGCCCAAGGACGCCATCCTGCTCAAGTACGAGGACGGCGATGGCGATCA
CATCGTTTTTACCGGGGACGATAACCTCCACGAGGCGGTGGACATGGCGA
GGCTTTCCAACGCGCCCGCGCTGAAGCTCATGGCGTCACGCAAGCTGCCA
ACGCTGCCAGAGGACACCAACGACGCTTCTGTC
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