mRNA_A-nodosum_M_contig8.29.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: D8LE19_ECTSI (Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE19_ECTSI) HSP 1 Score: 366 bits (940), Expect = 7.110e-121 Identity = 179/221 (81.00%), Postives = 196/221 (88.69%), Query Frame = 1
Query: 1 RCELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
R + +VILLGDGTVGKTSIATRFAQ DFSQ YKQTIGLDFFVKRI+LPGDV V MQIWDIGGQSIGSKMMSKYI GAHAV+MCYDITNYDSFQ+LDDWYR+VVK F G MPYVAMVGNKCDLSHMRAVRT+SAHQFADDN MYTFFMSAKSGDQV+ACFHRIAGHLSGIA +R QLDAAG V++A+IVN+RRHDE V+GGE+P+YTS + C LS
Sbjct: 26 RLQYKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQIWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQDLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSR----RPKTCTLS 242
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A6H5JPJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ9_9PHAE) HSP 1 Score: 356 bits (913), Expect = 1.320e-115 Identity = 176/226 (77.88%), Postives = 194/226 (85.84%), Query Frame = 1
Query: 13 QVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAH---------AVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
+VILLGDGTVGKTSIATRFAQ DFSQ YKQTIGLDFFVKRI+LPGDV V MQ+WDIGGQSIGSKMMSKYI GAH AV+MCYDITNYDSFQNLDDWYR+VVK F G MPYVAMVGNKCDLSHMRAVRT+SAH+FADDN MYTFFMSAKSGDQV+ACFHRIAGHLSG+A +R QLDAAG V++A+IVN+RRHDE V+GGE+P+YTS + C LS
Sbjct: 101 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQVWDIGGQSIGSKMMSKYIFGAHVRSGGTGLIAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHRFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGVALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSR----RPKTCTLS 322
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A835YXE0_9STRA (Rab28, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE0_9STRA) HSP 1 Score: 276 bits (706), Expect = 6.270e-86 Identity = 133/222 (59.91%), Postives = 175/222 (78.83%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRS---QLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
+ ++ILLGDG VGKTSIA RFA++ FSQ+YKQTIGLDFF+KRIVLPGD+ VA+Q+WDIGGQSIGSKM+ YI G+HAV+ CYD+TN DSF +L+DW +V+K+ A+ + P +A+ GNKCDLSH+RAVR+ + + FAD + M +FMSAKSGDQVNACFHR+A L+ ++ +++ +LD A VVTA IVNH RHD +VN GEVPE+T + R+C +S
Sbjct: 17 QFKIILLGDGAVGKTSIANRFAKESFSQSYKQTIGLDFFIKRIVLPGDISVALQLWDIGGQSIGSKMLGNYIHGSHAVIFCYDVTNADSFLDLEDWRSLVMKS-AADDKPVMALAGNKCDLSHIRAVRSEAINTFADKHDMQVYFMSAKSGDQVNACFHRLAAQLAEVSLSKADLQRLDGAENVVTAEIVNHPRHDPNVNKGEVPEFTKTG-----RSCSVS 232
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S0HTS2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HTS2_9EUKA) HSP 1 Score: 266 bits (681), Expect = 3.670e-82 Identity = 119/194 (61.34%), Postives = 157/194 (80.93%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDE 588
+ +VILLGDG VGKTSIA RF +D F++AYKQTIG+DFF+KR+VLPG+VHVA+QIWDIGGQ+IG KM+ YI GA AV++CYDITNY SFQNL+DW+R+V + F MPYV +VGNK DL+HMRAV+ QFAD+N MY+F +SAK+GD V++CF+R+A L+G+ T+ +L+ A ++V A IVNH +HD+
Sbjct: 24 QYKVILLGDGAVGKTSIAMRFTEDHFAKAYKQTIGVDFFIKRLVLPGEVHVALQIWDIGGQTIGGKMIGNYIYGAQAVLLCYDITNYQSFQNLEDWFRLVRRTFQGSAMPYVTLVGNKTDLNHMRAVKAEKHSQFADENDMYSFLLSAKTGDNVSSCFYRLAADLAGVVLTKPELEIASKIVRAEIVNHPQHDQ 217
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S3M8N4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8N4_9STRA) HSP 1 Score: 265 bits (677), Expect = 2.230e-81 Identity = 125/219 (57.08%), Postives = 166/219 (75.80%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
+ ++ILLGDG VGKTSIATRF+++ FSQ YKQT+G+DFF+KRI LP + +A QIWDIGGQSIGSKM++ YI GA AV++CYDITNY+SF NL+DWYRIV++ F MPYVA++GNK DL H+ AVR ++FA++N + +F MSAK+GDQV F +IA L+ + + + + + VV A I++H+RHDESVN G+VPEYT NT NCI+S
Sbjct: 34 QFKIILLGDGAVGKTSIATRFSEEKFSQNYKQTVGVDFFMKRIHLPPNHQIACQIWDIGGQSIGSKMITNYIAGADAVLLCYDITNYESFANLEDWYRIVLRTFYQAKMPYVALLGNKNDLKHLTAVRAVQHNKFAEENGLASFMMSAKNGDQVTQAFWKIASTLANVPYQKFEQQSQAIVVPATIIDHKRHDESVNRGKVPEYTKK----NTTNCIIS 248
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S0P625_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P625_9EUKA) HSP 1 Score: 263 bits (671), Expect = 1.920e-80 Identity = 117/193 (60.62%), Postives = 158/193 (81.87%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHD 585
+ +VILLGDG VGKTSIA RF +D F++ YKQTIGLDFF+KR+VLPGDV+VA+QIWDIGGQ+IG KM+S YI GA AV++CYDITNY++FQNL+DW+R+V + F+ GNMPYV + GNK DL+HMRAV+ +QFA++N M T FMSAK+GD V++CF+++A L+G+ ++ +L+ A ++V A IVNH + D
Sbjct: 35 QYKVILLGDGAVGKTSIAMRFTEDHFAKTYKQTIGLDFFIKRLVLPGDVNVALQIWDIGGQTIGGKMISNYIYGAQAVLLCYDITNYETFQNLEDWFRLVRRTFSQGNMPYVVLAGNKTDLNHMRAVKLEKHNQFAEENEMITAFMSAKTGDAVSSCFYKVAADLAGVVLSKPELEVASKIVKAEIVNHPQED 227
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S1CBI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBI3_9STRA) HSP 1 Score: 262 bits (669), Expect = 2.920e-80 Identity = 120/196 (61.22%), Postives = 157/196 (80.10%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESV 594
+ +VILLGDG VGKTSIA RF D FS+ YKQTIGLDFF+KR+VLPGD+HVA+QIWDIGGQSIG KM+ YI GA AV++CYD+TNY SFQNL+DWYR+V + A+ MPYVA+VGNK DL+HMRAV+ + F+D+N MY++FMSAK+GD V + F+RIA L+G+ T+ +++ +VV A +VNH+R+D +V
Sbjct: 23 QYKVILLGDGAVGKTSIAARFTNDYFSKMYKQTIGLDFFIKRLVLPGDIHVALQIWDIGGQSIGGKMIKNYIYGAQAVLLCYDVTNYASFQNLEDWYRLVQQTHAADAMPYVALVGNKTDLNHMRAVKLDKHNLFSDENDMYSYFMSAKTGDSVASSFYRIAADLAGVVLTKPEIEVESKVVKAELVNHQRNDPAV 218
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A813DPM1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DPM1_POLGL) HSP 1 Score: 258 bits (658), Expect = 9.650e-79 Identity = 121/207 (58.45%), Postives = 160/207 (77.29%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSS 627
+ +VILLGDG VGKTS+ATRF +D F++ YKQTIGLDFFVKR+VLPGDVHV +QIWDIGGQSIG KM+S YI G++AVV+CYDITNY+SFQ+L+DW +V + F +PYVA++GNK DL+HMRAV+ QFAD+N +YT+F+SA++GDQV+ F RIA L+G+ T+ +L+ A + A +VNH RHD ++PE +S
Sbjct: 23 QYKVILLGDGAVGKTSLATRFCEDHFAKQYKQTIGLDFFVKRVVLPGDVHVCLQIWDIGGQSIGGKMVSNYIHGSNAVVLCYDITNYESFQHLEDWLFLVKRTFGESPLPYVALMGNKHDLAHMRAVKVDKHTQFADENDLYTYFVSARTGDQVHPSFFRIAADLAGVTLTKPELEVAQKPTKAELVNHPRHDP-----DLPEVNAS 224
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S2XY86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY86_9STRA) HSP 1 Score: 255 bits (651), Expect = 2.770e-78 Identity = 118/172 (68.60%), Postives = 143/172 (83.14%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTR 522
+ +VI+LGDG VGKTSIA RF + FS+AYKQTIGLDFF+K+++LPGDVHVA+QIWDIGGQS+GSKM+ YI GAHAV++CYDITNYDSFQNL+DWYR+V + FA MPYV +V NK DL+HMRAVR +QFAD+N +Y F MSAKSGDQVNACF+RIA L+G T+
Sbjct: 24 QFKVIILGDGAVGKTSIAMRFTDNSFSKAYKQTIGLDFFIKKLILPGDVHVALQIWDIGGQSMGSKMIHNYIFGAHAVLLCYDITNYDSFQNLEDWYRLVRRTFARDTMPYVGLVANKSDLNHMRAVRQDVHNQFADENELYGFVMSAKSGDQVNACFYRIAAALAGGGVTK 195
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A2R5GAN9_9STRA (Ras-related protein Rab-28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAN9_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.870e-77 Identity = 123/219 (56.16%), Postives = 159/219 (72.60%), Query Frame = 1
Query: 7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
+ +VILLGDG+VGKTS ATRF Q F + YKQTIGLDFF+KR+VLPG+++VA+QIWDIGGQSIGSKM+S YI GA A+V+ YDITNY SF+NL+DW R+V K F+ G MP+VA+V NKCDL H+R V + FAD+N Y++ +SAKSGD V FHR+A L+G+ TR + A +VV A I++H + D VN P Y S S + +CI+S
Sbjct: 73 QFKVILLGDGSVGKTSTATRFTQGHFKRTYKQTIGLDFFIKRLVLPGEINVALQIWDIGGQSIGSKMISNYIYGADAIVLMYDITNYQSFRNLEDWMRLVRKVFSEGPMPHVALVANKCDLEHVRTVTKEKHNDFADENEFYSYSLSAKSGDNVRGTFHRLAADLAGVTLTRPEFQVAHQVVKAEIIDHEKDDPEVNA---PSYASGSKS----HCIIS 284 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8.29.2 >prot_A-nodosum_M_contig8.29.2 ID=prot_A-nodosum_M_contig8.29.2|Name=mRNA_A-nodosum_M_contig8.29.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp MQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKback to top mRNA from alignment at A-nodosum_M_contig8:294334..297422- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8.29.2 ID=mRNA_A-nodosum_M_contig8.29.2|Name=mRNA_A-nodosum_M_contig8.29.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3089bp|location=Sequence derived from alignment at A-nodosum_M_contig8:294334..297422- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8:294334..297422- >mRNA_A-nodosum_M_contig8.29.2 ID=mRNA_A-nodosum_M_contig8.29.2|Name=mRNA_A-nodosum_M_contig8.29.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig8:294334..297422- (Ascophyllum nodosum dioecious)back to top |