mRNA_A-nodosum_M_contig8.29.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8.29.2
Unique NamemRNA_A-nodosum_M_contig8.29.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: D8LE19_ECTSI (Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE19_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 7.110e-121
Identity = 179/221 (81.00%), Postives = 196/221 (88.69%), Query Frame = 1
Query:    1 RCELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
            R + +VILLGDGTVGKTSIATRFAQ DFSQ YKQTIGLDFFVKRI+LPGDV V MQIWDIGGQSIGSKMMSKYI GAHAV+MCYDITNYDSFQ+LDDWYR+VVK F  G MPYVAMVGNKCDLSHMRAVRT+SAHQFADDN MYTFFMSAKSGDQV+ACFHRIAGHLSGIA +R QLDAAG V++A+IVN+RRHDE V+GGE+P+YTS       + C LS
Sbjct:   26 RLQYKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQIWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQDLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSR----RPKTCTLS 242          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A6H5JPJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ9_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 1.320e-115
Identity = 176/226 (77.88%), Postives = 194/226 (85.84%), Query Frame = 1
Query:   13 QVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAH---------AVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
            +VILLGDGTVGKTSIATRFAQ DFSQ YKQTIGLDFFVKRI+LPGDV V MQ+WDIGGQSIGSKMMSKYI GAH         AV+MCYDITNYDSFQNLDDWYR+VVK F  G MPYVAMVGNKCDLSHMRAVRT+SAH+FADDN MYTFFMSAKSGDQV+ACFHRIAGHLSG+A +R QLDAAG V++A+IVN+RRHDE V+GGE+P+YTS       + C LS
Sbjct:  101 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQVWDIGGQSIGSKMMSKYIFGAHVRSGGTGLIAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHRFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGVALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSR----RPKTCTLS 322          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A835YXE0_9STRA (Rab28, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE0_9STRA)

HSP 1 Score: 276 bits (706), Expect = 6.270e-86
Identity = 133/222 (59.91%), Postives = 175/222 (78.83%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRS---QLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
            + ++ILLGDG VGKTSIA RFA++ FSQ+YKQTIGLDFF+KRIVLPGD+ VA+Q+WDIGGQSIGSKM+  YI G+HAV+ CYD+TN DSF +L+DW  +V+K+ A+ + P +A+ GNKCDLSH+RAVR+ + + FAD + M  +FMSAKSGDQVNACFHR+A  L+ ++ +++   +LD A  VVTA IVNH RHD +VN GEVPE+T +      R+C +S
Sbjct:   17 QFKIILLGDGAVGKTSIANRFAKESFSQSYKQTIGLDFFIKRIVLPGDISVALQLWDIGGQSIGSKMLGNYIHGSHAVIFCYDVTNADSFLDLEDWRSLVMKS-AADDKPVMALAGNKCDLSHIRAVRSEAINTFADKHDMQVYFMSAKSGDQVNACFHRLAAQLAEVSLSKADLQRLDGAENVVTAEIVNHPRHDPNVNKGEVPEFTKTG-----RSCSVS 232          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S0HTS2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HTS2_9EUKA)

HSP 1 Score: 266 bits (681), Expect = 3.670e-82
Identity = 119/194 (61.34%), Postives = 157/194 (80.93%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDE 588
            + +VILLGDG VGKTSIA RF +D F++AYKQTIG+DFF+KR+VLPG+VHVA+QIWDIGGQ+IG KM+  YI GA AV++CYDITNY SFQNL+DW+R+V + F    MPYV +VGNK DL+HMRAV+     QFAD+N MY+F +SAK+GD V++CF+R+A  L+G+  T+ +L+ A ++V A IVNH +HD+
Sbjct:   24 QYKVILLGDGAVGKTSIAMRFTEDHFAKAYKQTIGVDFFIKRLVLPGEVHVALQIWDIGGQTIGGKMIGNYIYGAQAVLLCYDITNYQSFQNLEDWFRLVRRTFQGSAMPYVTLVGNKTDLNHMRAVKAEKHSQFADENDMYSFLLSAKTGDNVSSCFYRLAADLAGVVLTKPELEIASKIVRAEIVNHPQHDQ 217          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S3M8N4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8N4_9STRA)

HSP 1 Score: 265 bits (677), Expect = 2.230e-81
Identity = 125/219 (57.08%), Postives = 166/219 (75.80%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
            + ++ILLGDG VGKTSIATRF+++ FSQ YKQT+G+DFF+KRI LP +  +A QIWDIGGQSIGSKM++ YI GA AV++CYDITNY+SF NL+DWYRIV++ F    MPYVA++GNK DL H+ AVR    ++FA++N + +F MSAK+GDQV   F +IA  L+ + + + +  +   VV A I++H+RHDESVN G+VPEYT      NT NCI+S
Sbjct:   34 QFKIILLGDGAVGKTSIATRFSEEKFSQNYKQTVGVDFFMKRIHLPPNHQIACQIWDIGGQSIGSKMITNYIAGADAVLLCYDITNYESFANLEDWYRIVLRTFYQAKMPYVALLGNKNDLKHLTAVRAVQHNKFAEENGLASFMMSAKNGDQVTQAFWKIASTLANVPYQKFEQQSQAIVVPATIIDHKRHDESVNRGKVPEYTKK----NTTNCIIS 248          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S0P625_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P625_9EUKA)

HSP 1 Score: 263 bits (671), Expect = 1.920e-80
Identity = 117/193 (60.62%), Postives = 158/193 (81.87%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHD 585
            + +VILLGDG VGKTSIA RF +D F++ YKQTIGLDFF+KR+VLPGDV+VA+QIWDIGGQ+IG KM+S YI GA AV++CYDITNY++FQNL+DW+R+V + F+ GNMPYV + GNK DL+HMRAV+    +QFA++N M T FMSAK+GD V++CF+++A  L+G+  ++ +L+ A ++V A IVNH + D
Sbjct:   35 QYKVILLGDGAVGKTSIAMRFTEDHFAKTYKQTIGLDFFIKRLVLPGDVNVALQIWDIGGQTIGGKMISNYIYGAQAVLLCYDITNYETFQNLEDWFRLVRRTFSQGNMPYVVLAGNKTDLNHMRAVKLEKHNQFAEENEMITAFMSAKTGDAVSSCFYKVAADLAGVVLSKPELEVASKIVKAEIVNHPQED 227          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S1CBI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBI3_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.920e-80
Identity = 120/196 (61.22%), Postives = 157/196 (80.10%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESV 594
            + +VILLGDG VGKTSIA RF  D FS+ YKQTIGLDFF+KR+VLPGD+HVA+QIWDIGGQSIG KM+  YI GA AV++CYD+TNY SFQNL+DWYR+V +  A+  MPYVA+VGNK DL+HMRAV+    + F+D+N MY++FMSAK+GD V + F+RIA  L+G+  T+ +++   +VV A +VNH+R+D +V
Sbjct:   23 QYKVILLGDGAVGKTSIAARFTNDYFSKMYKQTIGLDFFIKRLVLPGDIHVALQIWDIGGQSIGGKMIKNYIYGAQAVLLCYDVTNYASFQNLEDWYRLVQQTHAADAMPYVALVGNKTDLNHMRAVKLDKHNLFSDENDMYSYFMSAKTGDSVASSFYRIAADLAGVVLTKPEIEVESKVVKAELVNHQRNDPAV 218          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A813DPM1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DPM1_POLGL)

HSP 1 Score: 258 bits (658), Expect = 9.650e-79
Identity = 121/207 (58.45%), Postives = 160/207 (77.29%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSS 627
            + +VILLGDG VGKTS+ATRF +D F++ YKQTIGLDFFVKR+VLPGDVHV +QIWDIGGQSIG KM+S YI G++AVV+CYDITNY+SFQ+L+DW  +V + F    +PYVA++GNK DL+HMRAV+     QFAD+N +YT+F+SA++GDQV+  F RIA  L+G+  T+ +L+ A +   A +VNH RHD      ++PE  +S
Sbjct:   23 QYKVILLGDGAVGKTSLATRFCEDHFAKQYKQTIGLDFFVKRVVLPGDVHVCLQIWDIGGQSIGGKMVSNYIHGSNAVVLCYDITNYESFQHLEDWLFLVKRTFGESPLPYVALMGNKHDLAHMRAVKVDKHTQFADENDLYTYFVSARTGDQVHPSFFRIAADLAGVTLTKPELEVAQKPTKAELVNHPRHDP-----DLPEVNAS 224          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A7S2XY86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY86_9STRA)

HSP 1 Score: 255 bits (651), Expect = 2.770e-78
Identity = 118/172 (68.60%), Postives = 143/172 (83.14%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTR 522
            + +VI+LGDG VGKTSIA RF  + FS+AYKQTIGLDFF+K+++LPGDVHVA+QIWDIGGQS+GSKM+  YI GAHAV++CYDITNYDSFQNL+DWYR+V + FA   MPYV +V NK DL+HMRAVR    +QFAD+N +Y F MSAKSGDQVNACF+RIA  L+G   T+
Sbjct:   24 QFKVIILGDGAVGKTSIAMRFTDNSFSKAYKQTIGLDFFIKKLILPGDVHVALQIWDIGGQSMGSKMIHNYIFGAHAVLLCYDITNYDSFQNLEDWYRLVRRTFARDTMPYVGLVANKSDLNHMRAVRQDVHNQFADENELYGFVMSAKSGDQVNACFYRIAAALAGGGVTK 195          
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Match: A0A2R5GAN9_9STRA (Ras-related protein Rab-28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAN9_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.870e-77
Identity = 123/219 (56.16%), Postives = 159/219 (72.60%), Query Frame = 1
Query:    7 ELQVILLGDGTVGKTSIATRFAQDDFSQAYKQTIGLDFFVKRIVLPGDVHVAMQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVKAFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGDQVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVPEYTSSSHTINTRNCILS 663
            + +VILLGDG+VGKTS ATRF Q  F + YKQTIGLDFF+KR+VLPG+++VA+QIWDIGGQSIGSKM+S YI GA A+V+ YDITNY SF+NL+DW R+V K F+ G MP+VA+V NKCDL H+R V     + FAD+N  Y++ +SAKSGD V   FHR+A  L+G+  TR +   A +VV A I++H + D  VN    P Y S S +    +CI+S
Sbjct:   73 QFKVILLGDGSVGKTSTATRFTQGHFKRTYKQTIGLDFFIKRLVLPGEINVALQIWDIGGQSIGSKMISNYIYGADAIVLMYDITNYQSFRNLEDWMRLVRKVFSEGPMPHVALVANKCDLEHVRTVTKEKHNDFADENEFYSYSLSAKSGDNVRGTFHRLAADLAGVTLTRPEFQVAHQVVKAEIIDHEKDDPEVNA---PSYASGSKS----HCIIS 284          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.29.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE19_ECTSI7.110e-12181.00Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ9_9PHAE1.320e-11577.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXE0_9STRA6.270e-8659.91Rab28, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S0HTS2_9EUKA3.670e-8261.34Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3M8N4_9STRA2.230e-8157.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0P625_9EUKA1.920e-8060.62Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1CBI3_9STRA2.920e-8061.22Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A813DPM1_POLGL9.650e-7958.45Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S2XY86_9STRA2.770e-7868.60Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2R5GAN9_9STRA1.870e-7756.16Ras-related protein Rab-28 n=1 Tax=Hondaea ferment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:294334..297422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE19
Preferred nameRAB40C
PFAMsRas,SOCS_box
Model size1800
Max annot lvl2759|Eukaryota
KEGG koko:K07901,ko:K07915,ko:K07928,ko:K17199
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000131,GO:0000166,GO:0000910,GO:0001411,GO:0001882,GO:0001883,GO:0002790,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007049,GO:0007107,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009306,GO:0009653,GO:0009987,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017157,GO:0019001,GO:0019867,GO:0019953,GO:0022402,GO:0022406,GO:0022413,GO:0022414,GO:0022607,GO:0030133,GO:0030154,GO:0030427,GO:0030435,GO:0030437,GO:0031090,GO:0031321,GO:0031410,GO:0031521,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032502,GO:0032505,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034293,GO:0034613,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0045184,GO:0046903,GO:0048193,GO:0048278,GO:0048284,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051286,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0070887,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:1901265,GO:1901363,GO:1903046,GO:1903530,GO:1990778
Exons5
Evalue1.64e-93
EggNOG OGsKOG0078@1|root,KOG0078@2759|Eukaryota
Ec32 ortholog descriptionRab28, Ras superfamily GTPase
Ec32 orthologEc-05_004380.1
DescriptionGTPase activity
Cds size504
COG categoryS
BRITEko00000,ko00001,ko03036,ko04031,ko04121,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.29.2prot_A-nodosum_M_contig8.29.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8 295468..296796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870079.9044123-UTR-A-nodosum_M_contig8:294333..2954671680870079.9044123-UTR-A-nodosum_M_contig8:294333..295467Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8 294334..295467 -
1680870079.9749806-UTR-A-nodosum_M_contig8:296796..2968131680870079.9749806-UTR-A-nodosum_M_contig8:296796..296813Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8 296797..296813 -
1680870079.9909978-UTR-A-nodosum_M_contig8:297277..2974221680870079.9909978-UTR-A-nodosum_M_contig8:297277..297422Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8 297278..297422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870079.923267-CDS-A-nodosum_M_contig8:295467..2956681680870079.923267-CDS-A-nodosum_M_contig8:295467..295668Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 295468..295668 -
1680870079.9370322-CDS-A-nodosum_M_contig8:295967..2960711680870079.9370322-CDS-A-nodosum_M_contig8:295967..296071Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 295968..296071 -
1680870079.9535353-CDS-A-nodosum_M_contig8:296305..2964321680870079.9535353-CDS-A-nodosum_M_contig8:296305..296432Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 296306..296432 -
1680870079.963124-CDS-A-nodosum_M_contig8:296724..2967961680870079.963124-CDS-A-nodosum_M_contig8:296724..296796Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 296725..296796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8.29.2

>prot_A-nodosum_M_contig8.29.2 ID=prot_A-nodosum_M_contig8.29.2|Name=mRNA_A-nodosum_M_contig8.29.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp
MQIWDIGGQSIGSKMMSKYICGAHAVVMCYDITNYDSFQNLDDWYRIVVK
AFASGNMPYVAMVGNKCDLSHMRAVRTSSAHQFADDNAMYTFFMSAKSGD
QVNACFHRIAGHLSGIAFTRSQLDAAGRVVTANIVNHRRHDESVNGGEVP
EYTSSSHTINTRNCILS*
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mRNA from alignment at A-nodosum_M_contig8:294334..297422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8.29.2 ID=mRNA_A-nodosum_M_contig8.29.2|Name=mRNA_A-nodosum_M_contig8.29.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3089bp|location=Sequence derived from alignment at A-nodosum_M_contig8:294334..297422- (Ascophyllum nodosum dioecious)
CGATGTGAACTACAGGTAATCCTGTTGGGTGATGGGACCGTGGGAAAAAC TTCGATCGCGACGAGGTTCGCCCAGGACGACTTCTCACAGGCTTACAAGC AAACGATCGGGCTAGACTTTTTCGTGAAACGCATTGTTTTACCAGGTACT TCGAACAACGCGGTAGGTGTGCGCGCCTCGCGGTCTGATCGCCGTATTAT GGTGCGCTGAGAGGGCTTCTCACTAAAGATGTAGGCCTTAAAGTAACCGT GCCTCAAGCTAGTCAGCACGTCGATTCGACAGCATGAGGTCGTGGGGAAT CTCCGATGGCTCTTGCGCCTCGCGCAACGGCGACGACTTCGAACAGATAT CTTACTTGCGACTTCGAACAAACACCGTAGGACAACGGGATATGTCCCCA GCGCGCGCCGCGTTTCCTCACACGGTTGTGGCGGGGCGCCAAACTCGGTA GTCTTATTCGTCCGTTGCGGCCGTCTGCACCTTGGTAAATGCCATACGAA ATATGTCCGTTGAAGCGACGATCACTCGCTTCGTTCCCACGCCCTGGACG TATCGTTAGAGCTATTTACCAAACGGCGGCATTTGTTCCGCCTGCTTGCA CTTGAAAAGGAGATGTACACGTCGCCATGCAAATATGGGACATTGGGGGT CAGAGCATCGGGAGCAAGATGATGTCGAAGTACATATGCGGCGCCCATGT AAGCATCTAGATCGAGATTATCGTGCGTATGCGCGCACGTCGCTAGAAAG CCTGTGCAGGATCGTGGTGTCTTTGGGGTGCACTCTACGGTTGCCACCAC ATGTAATTACTGTTACAAATAGTTACTGCACGAGTAGTGAACTAGCGCCT AAGAGTGGCCTGATGGCCTGATACGAGGTATGTGATTCCGATAACGTCGA CCGGCCTTGTCCGTCGACCTACTACCGGACATCGTCTTGATACGTATCTG CGACCGGTCAAGCCCACTCGAGAAATTATCCCACAAACAGGCGGTTGTGA TGTGCTACGATATCACGAACTACGACAGCTTCCAGAACCTGGACGATTGG TATCGCATCGTTGTGAAGGCGTTCGCCAGCGGCAACATGCCGTACGTGGC AATGGTAGGAAACAAATGTGAGCCTGCGTCCACGGCTCCGCTCGGCCACC AAACGCCTGCTTGTGTGCGAGTCGTTGTCGCTTTTGCTCTCATATGCCAT CGTTTTTCATAGAGATTTGCGGTCCTTCGTGATGACGCCTCGGCGCCTCC TACGAGCACTCGTTCTTCGCGAAGCATTTCCTCCTGAGTTTGACGTGCAA TCTGGCGTCATTGCCACAGCTCCATCTGTCTCTGCCCCGACACGTGCCCA GGCGATCTGAGCCACATGCGAGCGGTTCGCACGTCAAGCGCTCATCAGTT CGCCGATGACAATGCCATGTACACTTTCTTCATGTCGGCAAAGTCGGGAG ATCAGGTGGGTCCTCCTCTCCTTGAACACCTTCTTAAATATTTGCCAAGC CCCCGTGAAGCTTGCATGCTGTAGTATCGTGTACGCATTTTCCCTTCGTG CTTAACTACACTGAAGTTTATACAGCGTTATCCCCGGGATAACGGTGGTG CGATCCTCATCGCACCCTACTTCGTCTTCTGCGCTGTTGATTTCTATGAT GTCGCTCGGCGGGTGCTGCTGAGAGAGTCGGGGAAGCAATGTCGCAAAGC CTGAAGGAGATCCACAAACGCGACCATTAAGCGCTGTGCCGTCGTCCACG ACAGGTGAACGCTTGCTTTCACCGAATAGCGGGACACTTATCTGGCATTG CATTCACCCGGTCGCAGCTAGACGCCGCTGGGCGGGTGGTGACTGCCAAC ATCGTTAACCATCGGCGACACGACGAGAGCGTTAATGGCGGAGAGGTGCC CGAGTACACGTCTTCATCACATACTATTAATACGAGGAATTGCATCTTGT CGTAAAGTCACCCCCCCCCTACAGTAGCTTGGTTGTGGTGAATGCTCCCG ATGAGGGAAAAGCACGCCAAAGGACTAAGTAAGGTACTGGCGCTTTCCTC GCTACGAAAAAGCTCGTCAAAGTTTTACTACGGAGCTGAAGCAATCGTAC GAAAGCAGAAGAACCAGACTAATGGGATGGCGGTACAGTATTGAGTCTAC TGCAGCTTATCGTGGATTCATCGCTGTAGATGGATATTCGCGGACCATTT TTTAATATCTGTTTCAGACACGAGGCACGCGACGAGCGTCAGCGTTGTGC CTTCCACTTTTGTTTAGATTTGTAGTGCCAACAATTCACACAAGTGCTGC GTTCGCGAGCGATTTGAGAGTTCATTCGTTCGACAATTTTCGTTTGAGGT CCTTGTCATCCGCGGGTCTTCTTTCGCGGATGCAGTTGTGGTCTCGACCG TTTTCGATTCACAGTGAACGCGGCCCTGGGAGCAGTTCGTGGGCCCGACA CCAGCTAACAATGCGCAGGCCCACAGCAGTACCACGAGATGTTTAGTTTT GATGGCGTTTTTCGAATCCCTCCGTGAATCCCGCGCCATTTCACAGCTGG AACGGCATAGTTCGAGTTCTGGTAAGCAGCTGGAAGGAAACAGGGTTTTC CCCTGACAGTGTGTCACTTCCTGGCGACGATTGCGTTTGCTGACTAATGT ACTTTTCTTGTCCGTTTTCCCCTTCTGTCTGCTTTCCTTTCTTCTTTTTT TCTTTGGCCGTGTTGCCGGTTGGGTTTGGTTTGGTTCCGTCTATCTTGTG ACCACGGCTGGACTCGTAGCGGATCAGTTAATATGAGACAAATAACAATA ACAGTCTGTGACGCAACGGGAACATCCTCAGCGGCATGGCCTCCGGTGCG TTTCGGGCATCGAAGTTGCTGCACACCTTCCCGTCGCCCCTTCTGTAGCT CCTTGGGGCTCGGTTTCCTCTTTTGGTTCGTGGTCTCGCTTGATTGCGCC GTTTTCGTTTCGTAACTTAATGTGCAAAGCTTTGAAGAGAATGGCAGAAC GGAGCGGGTGACCGTGTCGATGCTCTTAAGGTTCACGTCGTAGTGAAGCG ACACGGCGATAATCACATCAACAGTACAATGCAGGCCAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8:294334..297422-

>mRNA_A-nodosum_M_contig8.29.2 ID=mRNA_A-nodosum_M_contig8.29.2|Name=mRNA_A-nodosum_M_contig8.29.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig8:294334..297422- (Ascophyllum nodosum dioecious)
ATGCAAATATGGGACATTGGGGGTCAGAGCATCGGGAGCAAGATGATGTC
GAAGTACATATGCGGCGCCCATGCGGTTGTGATGTGCTACGATATCACGA
ACTACGACAGCTTCCAGAACCTGGACGATTGGTATCGCATCGTTGTGAAG
GCGTTCGCCAGCGGCAACATGCCGTACGTGGCAATGGTAGGAAACAAATG
CGATCTGAGCCACATGCGAGCGGTTCGCACGTCAAGCGCTCATCAGTTCG
CCGATGACAATGCCATGTACACTTTCTTCATGTCGGCAAAGTCGGGAGAT
CAGGTGAACGCTTGCTTTCACCGAATAGCGGGACACTTATCTGGCATTGC
ATTCACCCGGTCGCAGCTAGACGCCGCTGGGCGGGTGGTGACTGCCAACA
TCGTTAACCATCGGCGACACGACGAGAGCGTTAATGGCGGAGAGGTGCCC
GAGTACACGTCTTCATCACATACTATTAATACGAGGAATTGCATCTTGTC
GTAA
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