mRNA_A-nodosum_M_contig12514.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12514.1.1
Unique NamemRNA_A-nodosum_M_contig12514.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.770e-30
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPVEVPSLSESQIKEAVP 222
            YPNMAR ARVLLSVPAS+AVLERDFST GRLITG+RSRL+  YVEM LFLNGN+EYIP+EVP LS+SQ +EAVP
Sbjct:  724 YPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVP 797
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.070e-17
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPVEVPSLSESQIKEAVP 222
            YP +ARVARV+   PASAAVLERDFS  GR++T SRS +  +YVEM +FL+GN + IP ++  L+E+  +  +P
Sbjct:  618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIP 691
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.210e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRL-AGEYVEMTLFLNGNKEYIPVEVPSLSESQIKEAVP 222
            YP +ARVARV+   PASAAVLERDFS  GR++T SR  + +  YVEM LFL+GN + IP ++  L+E+  +  +P
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIP 80
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.390e-15
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPVEVPS 189
            YP +AR ARV+   PASAAVLE DF   GR++T SRS    +YVEM LFL+GN + IP ++P+
Sbjct:   48 YPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPA 110
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.010e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPVEVPSLSESQIKEAVP 222
            YP +AR ARV+   PASAAVLERDF+    ++  SRS    +YVEM LFL+GN + IP ++P L +  ++  +P
Sbjct:  558 YPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIP 631
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A662X2G8_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2G8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.790e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   19 VARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPV-EVPSLSESQIKEAVP 222
            VARV+ S+PAS+A +ERDF   GR++   RS LA   ++M+ FLN N+EY  + + P LS     E +P
Sbjct:  159 VARVVYSMPASSAQIERDFGMAGRMVVPHRSSLAPYNIDMSTFLNCNREYCDITQCPKLSADTASERIP 227
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A662Y7F3_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7F3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-8
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   19 VARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPV-EVPSLSESQIKEAVP 222
            VARV+ S+PAS+A +ERDF   GR++   RS LA   ++M+ FLN N+EY  + + P LS     E +P
Sbjct:  244 VARVVYSMPASSAQIERDFGMAGRMVVPHRSSLAPYNIDMSTFLNCNREYCDITQCPKLSADTASERIP 312
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BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-8
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGN 159
            +P++AR+AR +LS+PA++A  ERDFST G +I+  RS+L+ E V+  LFL+ N
Sbjct:  181 FPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233
[Close]
BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A662XJG1_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJG1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.850e-8
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   19 VARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPV-EVPSLSESQIKEAVP 222
            VARV+ S+PAS+A ++RDF   GR++   RS LA   ++M+ FLN N+EY  + + P LS     E +P
Sbjct:  352 VARVVYSMPASSAQIKRDFGMAGRMVVPHRSSLAPYNIDMSTFLNCNREYCDITQCPKLSAETASERIP 420
[Close]
BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Match: A0A080YX20_PHYPR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080YX20_PHYPR)

HSP 1 Score: 55.8 bits (133), Expect = 7.460e-8
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 YPNMARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGNKEYIPV 177
            Y  + +V R+L ++P S+A +ERDF T G+L+T  R  +A   V+M+ FLN N++++ V
Sbjct:   96 YTFLPQVVRILFAIPTSSAQIERDFGTAGQLVTPQRGSIAPYNVDMSAFLNCNRQFVDV 154
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE8.770e-3081.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE6.070e-1752.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.210e-1652.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE4.390e-1555.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI2.010e-1347.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A662X2G8_9STRA7.790e-944.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A662Y7F3_9STRA1.040e-844.93Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI0019661A933.130e-850.94zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A662XJG1_9STRA3.850e-843.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A080YX20_PHYPR7.460e-840.68Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12514contigA-nodosum_M_contig12514:4907..5128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra80540
Model size222
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.95e-11
EggNOG OGs299R4@1|root,2RGTA@2759|Eukaryota,3QIGE@4776|Peronosporales
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866684.9702048-UTR-A-nodosum_M_contig12514:4906..49151680866684.9702048-UTR-A-nodosum_M_contig12514:4906..4915Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12514 4907..4915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866684.98057-CDS-A-nodosum_M_contig12514:4915..51281680866684.98057-CDS-A-nodosum_M_contig12514:4915..5128Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12514 4916..5128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12514.1.1prot_A-nodosum_M_contig12514.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12514 4916..5128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12514.1.1

>prot_A-nodosum_M_contig12514.1.1 ID=prot_A-nodosum_M_contig12514.1.1|Name=mRNA_A-nodosum_M_contig12514.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MARVARVLLSVPASAAVLERDFSTTGRLITGSRSRLAGEYVEMTLFLNGN
KEYIPVEVPSLSESQIKEAVP
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mRNA from alignment at A-nodosum_M_contig12514:4907..5128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12514.1.1 ID=mRNA_A-nodosum_M_contig12514.1.1|Name=mRNA_A-nodosum_M_contig12514.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig12514:4907..5128+ (Ascophyllum nodosum dioecious)
TACCCGAACATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATC
TGCTGCCGTCCTCGAGAGGGACTTCAGCACGACCGGGCGCCTCATCACCG
GGTCCCGTAGCCGGCTGGCGGGTGAATACGTGGAGATGACGCTGTTTCTC
AACGGCAACAAGGAATACATCCCCGTGGAGGTGCCCTCCCTGTCAGAAAG
TCAGATAAAGGAGGCGGTGCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12514:4907..5128+

>mRNA_A-nodosum_M_contig12514.1.1 ID=mRNA_A-nodosum_M_contig12514.1.1|Name=mRNA_A-nodosum_M_contig12514.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig12514:4907..5128+ (Ascophyllum nodosum dioecious)
ATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCGT
CCTCGAGAGGGACTTCAGCACGACCGGGCGCCTCATCACCGGGTCCCGTA
GCCGGCTGGCGGGTGAATACGTGGAGATGACGCTGTTTCTCAACGGCAAC
AAGGAATACATCCCCGTGGAGGTGCCCTCCCTGTCAGAAAGTCAGATAAA
GGAGGCGGTGCCT
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