mRNA_A-nodosum_M_contig125.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig125.15.1
Unique NamemRNA_A-nodosum_M_contig125.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5KS16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS16_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.030e-47
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CG YRGISLVAHAGK++LKI+A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:   46 ATINVLFKKGDTMECGNYRGISLVAHAGKVLLKIVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHF 167
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5JWA1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.530e-47
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CG YRGISLVAHAGK++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:   21 ATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHF 142
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5L6C1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C1_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.970e-46
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = -2 
Query:  167 VLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 520
            VL KK D   CG YRGISLVAHAGK++LK++A  LS YCER GILP E+SGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:   26 VLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEESGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHF 143
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5KMK7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK7_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 7.520e-46
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = -2 
Query:  167 ESCPFALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 547
            E+   A I VL KK D   CG YRGISLVAH+GK++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:   67 EAWKDATIKVLFKKGDTMECGNYRGISLVAHSGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHF 193
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5KWW0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.840e-45
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CG YRGISLVAHAGK++LKI+A  LS YCER GILP EQSGFRP+RST D +  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:   51 ATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKIVATRLSHYCEREGILPEEQSGFRPHRSTLDTLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHF 172
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5JLV5_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.670e-45
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CGKYRGISLVAHAG ++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:  176 ATIKVLFKKGDTMECGKYRGISLVAHAGNVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHF 297
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5K7I5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.260e-45
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CG YRGISLVAHAGK++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW +L RFGVP  M  VI  +
Sbjct:  126 ATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDLLRRFGVPPKMQAVICHF 247
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5KCC3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC3_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 2.170e-44
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL +K D   CG YRGISLVAHAGK++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:  168 ATIKVLFEKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHF 289
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5K6B3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B3_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.560e-44
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CG YRGISLVAHA K++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:   51 ATIKVLFKKGDTMECGNYRGISLVAHASKVLLKVVATRLSPYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHF 172
[Close]
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.590e-44
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = -2 
Query:  167 ALIIVLHKKKDRTVCGKYRGISLVAHAGKIVLKIIARHLSEYCERVGILP*EQSGFRPNRSTTDIVSVIRRLQELARKKRIPLYVCFIDLTKAYDSFDRTLLWTVLARFGVPQNMIPVILRY 532
            A I VL KK D   CG YRGISLVAHAGK++LK++A  LS YCER GILP EQSGFRP+RST D++  I+RL ELARKK   ++ CF+DLTKAYDS DR LLW VL RFGVP  M+ VI  +
Sbjct:  131 ATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHF 252
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig125.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS16_9PHAE1.030e-4765.57Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JWA1_9PHAE2.530e-4764.75Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6C1_9PHAE3.970e-4664.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMK7_9PHAE7.520e-4662.20Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KWW0_9PHAE1.840e-4565.57Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLV5_9PHAE5.670e-4564.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7I5_9PHAE9.260e-4563.93Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KCC3_9PHAE2.170e-4463.93Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K6B3_9PHAE3.560e-4463.93Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KE31_9PHAE3.590e-4464.75Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig125contigA-nodosum_M_contig125:56894..57465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size574
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866680.3803632-UTR-A-nodosum_M_contig125:56893..570691680866680.3803632-UTR-A-nodosum_M_contig125:56893..57069Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig125 56894..57069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866680.3908753-CDS-A-nodosum_M_contig125:57069..574651680866680.3908753-CDS-A-nodosum_M_contig125:57069..57465Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig125 57070..57465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig125.15.1prot_A-nodosum_M_contig125.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig125 57070..57465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig125.15.1

>prot_A-nodosum_M_contig125.15.1 ID=prot_A-nodosum_M_contig125.15.1|Name=mRNA_A-nodosum_M_contig125.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MTGIIFCGTPKRASTVQRRVRSKESYALVRSIKHTYSGIRFFRASSCNRR
ITDTISVVERFGRKPLCSYGRIPTRSQYSLRCRAIIFSTILPACATSEMP
LYLPHTVRSFFLWSTMMRANGQDSWGFFKDAQ
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mRNA from alignment at A-nodosum_M_contig125:56894..57465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig125.15.1 ID=mRNA_A-nodosum_M_contig125.15.1|Name=mRNA_A-nodosum_M_contig125.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=572bp|location=Sequence derived from alignment at A-nodosum_M_contig125:56894..57465+ (Ascophyllum nodosum dioecious)
ACGTCAATAGACGACCAGATTAGACCTGAAAAGATCATGAGAAAACTGAC
TACAGGAGGGCTCTACCACACGTGATGATATGACTCTACATAACTGTATA
AGCGGAGTAACAAGCCCCATCGAGAACCAAAGTTCCATGATTCTCCCTCT
GCTTAGTGTAAGCTATATATCTTAGTATGACCGGGATCATATTCTGTGGC
ACGCCAAAACGGGCGAGTACTGTCCAGAGGAGGGTTCGATCAAAGGAGTC
GTACGCTTTGGTAAGGTCGATAAAGCATACATACAGCGGAATTCGTTTCT
TCCGCGCCAGCTCCTGTAACCGACGAATCACAGACACAATATCGGTGGTA
GAGCGGTTCGGTCGGAAACCACTCTGTTCCTACGGCAGAATCCCCACGCG
CTCGCAGTACTCGCTGAGGTGTCGAGCGATAATCTTTAGCACTATCTTGC
CGGCGTGCGCTACCAGCGAAATGCCCCTGTATTTGCCGCACACTGTCCGA
TCCTTTTTTTTATGGAGTACTATGATGAGGGCGAACGGGCAAGATTCGTG
GGGCTTCTTCAAGGATGCACAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig125:56894..57465+

>mRNA_A-nodosum_M_contig125.15.1 ID=mRNA_A-nodosum_M_contig125.15.1|Name=mRNA_A-nodosum_M_contig125.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig125:56894..57465+ (Ascophyllum nodosum dioecious)
ATGACCGGGATCATATTCTGTGGCACGCCAAAACGGGCGAGTACTGTCCA
GAGGAGGGTTCGATCAAAGGAGTCGTACGCTTTGGTAAGGTCGATAAAGC
ATACATACAGCGGAATTCGTTTCTTCCGCGCCAGCTCCTGTAACCGACGA
ATCACAGACACAATATCGGTGGTAGAGCGGTTCGGTCGGAAACCACTCTG
TTCCTACGGCAGAATCCCCACGCGCTCGCAGTACTCGCTGAGGTGTCGAG
CGATAATCTTTAGCACTATCTTGCCGGCGTGCGCTACCAGCGAAATGCCC
CTGTATTTGCCGCACACTGTCCGATCCTTTTTTTTATGGAGTACTATGAT
GAGGGCGAACGGGCAAGATTCGTGGGGCTTCTTCAAGGATGCACAG
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