mRNA_A-nodosum_M_contig1227.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1227.43.1
Unique NamemRNA_A-nodosum_M_contig1227.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1227.43.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-11
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RVIEIIQASMPLGSADEEIEVDIDTMDTSTLRELQSYIMELS--ASGSRQNGGADSDAD 171
            RV+EIIQA MPLGS+DEEIE+DID+MD  TLR+LQ +I ++S    G R  GG DSD+D
Sbjct: 1085 RVVEIIQARMPLGSSDEEIELDIDSMDNLTLRDLQGFIKDVSDKGGGRRGGGGVDSDSD 1143
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BLAST of mRNA_A-nodosum_M_contig1227.43.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.780e-6
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 RVIEIIQASMPLGSADE-EIEVDIDTMDTSTLRELQSYIMELSASGS 138
            RV++IIQ  MPLG+ DE EIE+DID+MDT TLRELQ Y+      GS
Sbjct:  654 RVVQIIQERMPLGAQDESEIEIDIDSMDTGTLRELQIYVESCMRRGS 700
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BLAST of mRNA_A-nodosum_M_contig1227.43.1 vs. uniprot
Match: A0A6U4KPS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KPS7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 8.540e-5
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 RVIEIIQASMPLGS--ADEEIEVDIDTMDTSTLRELQSYIMELSASGSRQNGG 153
            +VIEII   + LG+   DEEIE+DID +DT+T+RELQ+Y+ ++S S  + +GG
Sbjct:  698 KVIEIISERVHLGAHAGDEEIELDIDALDTATIRELQNYVNKVSGSKRKGDGG 750
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1227.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRH3_ECTSI1.250e-1162.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK9_9STRA9.780e-661.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4KPS7_9STRA8.540e-550.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1227contigA-nodosum_M_contig1227:221845..222248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRH3
PFAMsBET,Bromodomain
Model size404
Max annot lvl2759|Eukaryota
KEGG koko:K11684
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.26e-09
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size153
COG categoryBK
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.5540366-UTR-A-nodosum_M_contig1227:221844..2220681680866656.5540366-UTR-A-nodosum_M_contig1227:221844..222068Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1227 221845..222068 -
1680866656.5796747-UTR-A-nodosum_M_contig1227:222221..2222481680866656.5796747-UTR-A-nodosum_M_contig1227:222221..222248Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1227 222222..222248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866656.567609-CDS-A-nodosum_M_contig1227:222068..2222211680866656.567609-CDS-A-nodosum_M_contig1227:222068..222221Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1227 222069..222221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1227.43.1prot_A-nodosum_M_contig1227.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1227 222069..222221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1227.43.1

>prot_A-nodosum_M_contig1227.43.1 ID=prot_A-nodosum_M_contig1227.43.1|Name=mRNA_A-nodosum_M_contig1227.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
MPLGSADEEIEVDIDTMDTSTLRELQSYIMELSASGSRQNGGADSDADAW
*
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mRNA from alignment at A-nodosum_M_contig1227:221845..222248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1227.43.1 ID=mRNA_A-nodosum_M_contig1227.43.1|Name=mRNA_A-nodosum_M_contig1227.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=404bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:221845..222248- (Ascophyllum nodosum dioecious)
CGTGTCATCGAGATAATTCAGGCAAGCATGCCTCTAGGAAGCGCCGACGA
AGAAATTGAAGTCGACATCGATACCATGGATACCTCAACCCTGCGTGAAC
TTCAGTCATACATTATGGAACTCAGTGCGAGCGGCTCTCGTCAAAATGGG
GGCGCCGATTCCGACGCGGATGCGTGGTGATCCTGTGACAATCCATGGTG
ACACTTGCATTTGCGTTGGAATCTTAGTTGTGCTCGTCGTAGGATCGTAG
GTGCTTAGGTCGTATCAAGGTTACAGGATGCTGTCGAGATATAGTAGTGG
TTTATGACGAAAAGTATTGGATGTCGCCGCGCTCCTTTTTCGATTCGCTG
AGTTCGGAGAGGAAGCTGAGCTCTACTCGTTTTTGTATTTACACTGCGTG
CACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1227:221845..222248-

>mRNA_A-nodosum_M_contig1227.43.1 ID=mRNA_A-nodosum_M_contig1227.43.1|Name=mRNA_A-nodosum_M_contig1227.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1227:221845..222248- (Ascophyllum nodosum dioecious)
ATGCCTCTAGGAAGCGCCGACGAAGAAATTGAAGTCGACATCGATACCAT
GGATACCTCAACCCTGCGTGAACTTCAGTCATACATTATGGAACTCAGTG
CGAGCGGCTCTCGTCAAAATGGGGGCGCCGATTCCGACGCGGATGCGTGG
TGA
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