mRNA_A-nodosum_M_contig1222.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1222.9.1
Unique NamemRNA_A-nodosum_M_contig1222.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1222.9.1 vs. uniprot
Match: A0A6H5KSZ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.410e-22
Identity = 63/132 (47.73%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:    1 MRTSTLSAIVGIALSCCKPCAIGFVMPSGRLPSGTSSGTASERHMVNQHPRRGSLRALAAEGKPAKGVGNEEEQGPMDLNLEQMFEVFEAADKEVSDEAVGKKSDSTKPGTGKDPAEAMGDMLSNFFGGGKK 396
            MRTS  S I   +L+C    A  F+ PS  +   +++ T+     +++       RA+    +   G    EEQ PMDL+LEQMFEVFEAADKEVSDE VGKK         KDPAEAMGDMLS+FFGGG+K
Sbjct:    1 MRTSATSFIAAGSLACLSS-ASAFLFPSAAVDLRSAAPTSVASQSISRSSS--GRRAVILFAEKEDGA---EEQEPMDLDLEQMFEVFEAADKEVSDEEVGKKGGKKPAARAKDPAEAMGDMLSSFFGGGEK 126
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BLAST of mRNA_A-nodosum_M_contig1222.9.1 vs. uniprot
Match: A0A835YKL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKL6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.810e-6
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:  232 DLNLEQMFEVFEAADKEVSDEAVGKKSDSTKPGTGKDPAEAMGDMLSNFFGGGKK 396
            DLNLE MFEVF+ ADK +SD+ VGK         GKD  + + DML + FGG K+
Sbjct:    9 DLNLEDMFEVFDKADKSISDKEVGKAG-------GKDAGKDIADMLGSLFGGKKE 56
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1222.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSZ7_9PHAE5.410e-2247.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKL6_9STRA6.810e-650.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1222contigA-nodosum_M_contig1222:118699..121620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1079
Hectar predicted targeting categorychloroplast
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003860.1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866652.6531427-UTR-A-nodosum_M_contig1222:118698..1193781680866652.6531427-UTR-A-nodosum_M_contig1222:118698..119378Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1222 118699..119378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866652.6659803-CDS-A-nodosum_M_contig1222:119378..1195191680866652.6659803-CDS-A-nodosum_M_contig1222:119378..119519Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1222 119379..119519 -
1680866652.676533-CDS-A-nodosum_M_contig1222:121362..1216201680866652.676533-CDS-A-nodosum_M_contig1222:121362..121620Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1222 121363..121620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1222.9.1prot_A-nodosum_M_contig1222.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1222 119379..121620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1222.9.1

>prot_A-nodosum_M_contig1222.9.1 ID=prot_A-nodosum_M_contig1222.9.1|Name=mRNA_A-nodosum_M_contig1222.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
MRTSTLSAIVGIALSCCKPCAIGFVMPSGRLPSGTSSGTASERHMVNQHP
RRGSLRALAAEGKPAKGVGNEEEQGPMDLNLEQMFEVFEAADKEVSDEAV
GKKSDSTKPGTGKDPAEAMGDMLSNFFGGGKK*
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mRNA from alignment at A-nodosum_M_contig1222:118699..121620-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1222.9.1 ID=mRNA_A-nodosum_M_contig1222.9.1|Name=mRNA_A-nodosum_M_contig1222.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2922bp|location=Sequence derived from alignment at A-nodosum_M_contig1222:118699..121620- (Ascophyllum nodosum dioecious)
ATGAGGACTTCTACGCTATCGGCCATTGTCGGGATAGCTCTTTCCTGCTG
TAAGCCCTGCGCAATCGGCTTCGTGATGCCTTCAGGTCGTTTACCATCAG
GAACATCAAGCGGCACTGCTTCCGAGCGTCATATGGTGAACCAACATCCC
CGGAGAGGTTCTCTCCGAGCGCTCGCAGCCGAGGGAAAACCTGCAAAGGG
AGTAGGAAACGAAGAGGAGCAGGGGCCTATGGATCTCAACTTGGAGCAGA
TGTTTGAGGTGCGGTGAGAGTTCAATGAACAATCAGTTTCTGCTTTTATT
TCGGTCTTCGCGCGGTACGCTGCTGCCGGTAACACAAGAAACCCTGAAAC
ATGAACACTAGGCAGACATTCAGAGCAAAGACGACGAAGTCGGTGTACTT
ACTGTCAGAGAGCTCAGACAGGTGCGCGACTGAGGCGCGAATCTACGCCA
GCTAGATCGGCTGTTGAATACATATAATAGCTTTATCGCGAGAATGGGAC
AGGGTCCTCGCGAAGTGATATCGATGCAACGAGCCCAAGAGAGGATGCGT
GGCTGCAGGACGACTAACACATGCAGTACCAAGCAGAAACCACCGAAATT
TTTCGTGTTTGACCTACGTTCTCATGGTACGTACGTACCTCTGTACAGTA
TACCGGTATTCTCAACCCAAACATTTTGAGTAAGCGATCTGCCCAATCGA
CGTACGAGTACATGAAGCAAAAAGCGCCAGAAAGCCTCACAAGGTACTAC
TGTATTACGTAGAGCACGATCTGTATTGAAAAAAAACACTCGGCCGTCCC
CTTCTCTTCGATACAGTCAACACTCTAGTCTGTAGAGCACCTTTAATTCG
CTCCGCCTCCAGCGGGACTCATTATTGACGCCGCTCCTTCTCCATGGGAA
ACCCTTCCAGTATATACTCCACCTTCTGAATGCTCTATTATAGTGGAACT
TTTGCGGTATCGTAAGCCCCCCGAGATACTAAGGGGTAGTAAATGTGAAG
CGTAGGGTGAAAAAGGCTGTATCAAGTAGGAGTGGGCGCTGATCAACGAA
AATGACGGATGTACTCTTTACTTTATGCAATTGTGGCGTCCACGGTAGGA
CATTTATTAAGTCGACGTTTCCCGCCGTAGAGTTGTAAAAGGGGCAAGAT
ACGGCAGCAGAGGTTACGTTGGAAATTTAGAAAAAACTTTACTACACTTG
GGCCGATTTTCCCCCGACTTTTTCACTGCAAACGACCCGTCTACGGAACT
ATAATAGGACTTCCGAGGGGATTAGGAAGTTTCGGACCACATGCCACCTG
ATGCACATCAACGAAGGCTGTCACCAAGGAGGTGGTTCCTCGACAAGAGA
TTCGCTACCTCGGCCTGCACCAGCGCGCCAACGGTCTCTGTGCTTGGGAG
CGCTTGCGTATCCGTCGCTTGCTACTACTATTGCTGTTTTTTTTATTTAT
TTGGAAAATGGTTCAAAGATGCAACCCCCCCCGCCCGCAACCGAGGCGTG
AGGCGATATTTTGTTGGCGTTCCATGGAGGGTTTCAGGGGTGAGCCGGCG
AGTTCCTCCACAATTTTAGCGGACACAAAATGGGGACGAATTTTGTGGCC
TTTACCGTGGGGAAATGTTACGACGGAAATTGGCCACGAAATTCCCTCTA
TTTTCTAGCAAACACCCAAATATACCGCGAAATTTACAGCAAGGCTACTC
ATGCCCTGTAAGTTTAACTTATAGAGAGGGCGAGGTGATCTTTGCGAGAT
GCAGACAACAGCACGGCGTTTGTTTTTTTAGAGAGTGTACGGTGTCACGA
GGCAACTATTGCTACGCTTACTTTGGAGATGCGGCAAGATTGAAAAAAAT
GTATATATGGCGTGGTTGGACGCACTTGTGAGAGCAAGACCACGAAAAGG
CAACGAAAAAAAAAGAATCCACTGTTTTTGTCCGTATTCCTTTGCAACTT
TTCGAAACCATTTATTATGGTTGTGTCGACCCGATGACATGGGCAGTCTG
GAAGTGGGTAAACTTCTGAATACACTTCGATTTCCTATTCGCACGTGTAT
TTTTTTTGTTTTCCTTCTCGCGCGCTATCGTGAACAATACGAACTCTATA
GGTGTTCGAGGCTGCGGACAAGGAGGTCTCCGACGAGGCAGTGGGCAAAA
AGTCGGACTCAACGAAGCCCGGTACGGGGAAAGACCCCGCCGAAGCTATG
GGGGACATGCTCAGCAATTTCTTCGGGGGTGGCAAAAAGTAGCGCAGAAC
GTTTACGCACCCACGTCCTCTAAGAGATAAGTTCTGAATGTTTAGATGGA
GGTGTGTTATGACAACTCCAGAAGGTCTAGAGGCGTTGAGATTTTTCTTT
AAACTCCTCCGGGGATGGGTGTATAGGGTATATATATTCCCGCTTTGTTT
TTTCCGCAAGATGATTGGTCAGCGAGAGCAAATATTGCAGACGATTTTGG
GAAAAAGCTGACCGAAGATTTTTTTATCTTGTGAGGTTGGTGCGTTGTCA
GTACCACGGTCGTGCTGTCGGGGTACTACGTCGTAGGAGGGGGCAGAGTG
AGGGGACATCTTCCATTTCCCCCCGAGTGCTTGTATCCCTTCAACTTGTA
CACTTCCTGTTGCGTCGCTCGAGTAATGTCATGTAAAAAGTCCATAATAG
CGGAGTTTTGAATTCGAGTCTTGGCAGTACAACTGGCACACTACCGTATC
GTGGTTTTCGTATTATAGAAAGCGTTTCGTATTATACAAAGCGCGAGGAA
GCACATTTCAACCAGTGCTCATTTGCAGCGTGAACCGGGGAGAGATGAGT
TGATGGTCAAGTGAACACAGGCTGGATGGGCACCGATACAATATCAAAAG
TAATAGGTGGGATTGGTAAGCCCATCGACAGAAAGTGACAAGAAATAAAC
AAAAATGAGGGAAACCAACCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1222:118699..121620-

>mRNA_A-nodosum_M_contig1222.9.1 ID=mRNA_A-nodosum_M_contig1222.9.1|Name=mRNA_A-nodosum_M_contig1222.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig1222:118699..121620- (Ascophyllum nodosum dioecious)
ATGAGGACTTCTACGCTATCGGCCATTGTCGGGATAGCTCTTTCCTGCTG
TAAGCCCTGCGCAATCGGCTTCGTGATGCCTTCAGGTCGTTTACCATCAG
GAACATCAAGCGGCACTGCTTCCGAGCGTCATATGGTGAACCAACATCCC
CGGAGAGGTTCTCTCCGAGCGCTCGCAGCCGAGGGAAAACCTGCAAAGGG
AGTAGGAAACGAAGAGGAGCAGGGGCCTATGGATCTCAACTTGGAGCAGA
TGTTTGAGGTGTTCGAGGCTGCGGACAAGGAGGTCTCCGACGAGGCAGTG
GGCAAAAAGTCGGACTCAACGAAGCCCGGTACGGGGAAAGACCCCGCCGA
AGCTATGGGGGACATGCTCAGCAATTTCTTCGGGGGTGGCAAAAAGTAG
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