mRNA_A-nodosum_M_contig1218.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.440e-52 Identity = 129/258 (50.00%), Postives = 157/258 (60.85%), Query Frame = 1
Query: 316 VAFFSSGSILDVEIGGFSPSKITGCRFEGNMATDGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEKNSDEVEDPDSCHWGVVCSRCTDH-CGAPAGID-----MDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAVG 1071
+AFFSSGS+ G P T C FE N A DGGA Y+AAGYD V SF NFAA+ XXXXXXXXXXXXXXXXXXXX N+F+CA G+YG + + + E D+C VVCSRC C +D +++ VP C+ V GVN +GN+G L+TLDL SG+YRTS +S I+EC+RE+AC GGS AG YCA GY G YCAAC +GY SG QYSC+SC G N +A+G
Sbjct: 210 MAFFSSGSLE-----GSGPVNTTACVFERNSADDGGAFYSAAGYDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAIG 462
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.110e-41 Identity = 87/247 (35.22%), Postives = 126/247 (51.01%), Query Frame = 1
Query: 337 SILDVEIGGFSPSKITGCRFEGNMATDGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEKNSDEVEDPDSCHWGVVCSRCTDHCGAPAG--IDMDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAVG 1071
S+ D + G T C F+GN A DGGA+Y+AAGYD + F N A N+++C+SG+YG E E E +C +GVVCS C C G + +++ VP+CE GV+T+G+ G+ L L+L+ G+YRTS +S +++CY+E+AC GG++ +YC EGY G YCA C +GY SG+Q+SC C G N +A+G
Sbjct: 439 SLFDDDDPGSGSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIG 685
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 144 bits (362), Expect = 4.310e-34 Identity = 128/240 (53.33%), Postives = 157/240 (65.42%), Query Frame = 1
Query: 367 SPSKITGCRFEGNMAT-DGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEK--NSDEVEDPDSCHWGVVCSRCTDHCGAP---AGIDMDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAV 1068
+P K C FE N A DGGA+Y+ A +D + S F +N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N F+C G++G E + D D C +G VCSRC C + A +D T+P CE PEG TT G L TL+++ GFYR+S S +I EC+ ++AC+GGS G YCAEGY GPYCA C GY G+ +C+SC G +K +A+
Sbjct: 424 TPVKFLDCLFESNDALEDGGALYSVASFDMIRGSKFFQNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDNDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTT-RRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSAL 662
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 140 bits (353), Expect = 6.560e-33 Identity = 127/237 (53.59%), Postives = 156/237 (65.82%), Query Frame = 1
Query: 376 KITGCRFEGNMAT-DGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEK--NSDEVEDPDSCHWGVVCSRCTDHCGAPAGID---MDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAV 1068
K C FE N A+ DGGA+Y+ A +D + S+F+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN F+C G++G E + D D C + VCSRC CG+ +D T+P CE PEG TT G L TL+++ GFYR+S S +I EC+ +KAC GGS G YC+EGY GPYCA C GY G+ +C+SC G +K +A+
Sbjct: 403 KFLDCLFESNGASEDGGALYSVASFDVIRGSNFSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTT-RRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSAL 638
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 5.950e-11 Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 1
Query: 742 HCGAPAGIDMDETTVPVCEVV---PEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGG------SNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAV 1068
+C A ET+ +C V PEG++ + G LETL L G++R++ S I EC+ + AC G S+ YC GY GPYCA C+ GY +G ++C SC G + WA +
Sbjct: 421 YCNAGQYWVASETSCMMCADVALNPEGLSC-DSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDG-SYWAGM 536
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 1.360e-8 Identity = 57/160 (35.62%), Postives = 77/160 (48.12%), Query Frame = 1
Query: 334 GSILDVEIGGFS-PSKITGCRFEGNMATDGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEKNSDEVEDPDSCHWGVVCSRCTDHCGA-PAGIDM-DETTVPVCEVV 804
GS+ +VE S P+ T C FE N A DGGAIY+AAGYD + S F N A XXXXXXXXXX N+++C SG+YG + ++DE E +C + VC+ C C P + + ++ VP+CE V
Sbjct: 393 GSVWNVESPDDSGPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIAVGSRGAYLHSGLLVSLADTTFVGNRAGAAGLAVASLXXXXXXXXXXFESNTYYCQSGQYGYDISADEDEVSGTCRFDEVCTGCAVSCAEIPESVVVANDAFVPMCETV 552
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: A0A7S2QV68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV68_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.930e-7 Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 793 CEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGS--NAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQG 1047
C + EG+N S MKLE++ L GF+RT+ S ++ EC EKACKGG+ NA C EG+ GPYC G+ C C+G
Sbjct: 124 CVPIVEGMNP-HMSNMKLESVWLDPGFWRTNGGSSDVRECITEKACKGGNATNATDICREGHEGPYCXXXXXGWTKTAFSICEQCRG 209 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1218.1.1 >prot_A-nodosum_M_contig1218.1.1 ID=prot_A-nodosum_M_contig1218.1.1|Name=mRNA_A-nodosum_M_contig1218.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=222bp MATDGGAIYTAAGYDEVVKSSFTRNFAAVQGGALLHSGVLVALTECTFESback to top mRNA from alignment at A-nodosum_M_contig1218:24809..26733+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1218.1.1 ID=mRNA_A-nodosum_M_contig1218.1.1|Name=mRNA_A-nodosum_M_contig1218.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1925bp|location=Sequence derived from alignment at A-nodosum_M_contig1218:24809..26733+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1218:24809..26733+ >mRNA_A-nodosum_M_contig1218.1.1 ID=mRNA_A-nodosum_M_contig1218.1.1|Name=mRNA_A-nodosum_M_contig1218.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at A-nodosum_M_contig1218:24809..26733+ (Ascophyllum nodosum dioecious)back to top |