mRNA_A-nodosum_M_contig1218.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1218.1.1
Unique NamemRNA_A-nodosum_M_contig1218.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 2.440e-52
Identity = 129/258 (50.00%), Postives = 157/258 (60.85%), Query Frame = 1
Query:  316 VAFFSSGSILDVEIGGFSPSKITGCRFEGNMATDGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEKNSDEVEDPDSCHWGVVCSRCTDH-CGAPAGID-----MDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAVG 1071
            +AFFSSGS+      G  P   T C FE N A DGGA Y+AAGYD V   SF  NFAA+               XXXXXXXXXXXXXXXXXXXX            N+F+CA G+YG + +  + E  D+C   VVCSRC    C     +D     +++  VP C+ V  GVN +GN+G  L+TLDL SG+YRTS +S  I+EC+RE+AC GGS AG YCA GY G YCAAC +GY SG QYSC+SC G N  +A+G
Sbjct:  210 MAFFSSGSLE-----GSGPVNTTACVFERNSADDGGAFYSAAGYDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAIG 462          
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.110e-41
Identity = 87/247 (35.22%), Postives = 126/247 (51.01%), Query Frame = 1
Query:  337 SILDVEIGGFSPSKITGCRFEGNMATDGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEKNSDEVEDPDSCHWGVVCSRCTDHCGAPAG--IDMDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAVG 1071
            S+ D +  G      T C F+GN A DGGA+Y+AAGYD +    F  N A                                                 N+++C+SG+YG E    E E   +C +GVVCS C   C    G  + +++  VP+CE    GV+T+G+ G+ L  L+L+ G+YRTS +S  +++CY+E+AC GG++  +YC EGY G YCA C +GY SG+Q+SC  C G N  +A+G
Sbjct:  439 SLFDDDDPGSGSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIG 685          
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 4.310e-34
Identity = 128/240 (53.33%), Postives = 157/240 (65.42%), Query Frame = 1
Query:  367 SPSKITGCRFEGNMAT-DGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEK--NSDEVEDPDSCHWGVVCSRCTDHCGAP---AGIDMDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAV 1068
            +P K   C FE N A  DGGA+Y+ A +D +  S F +N     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N F+C  G++G E   + D     D C +G VCSRC   C +    A   +D  T+P CE  PEG  TT   G  L TL+++ GFYR+S  S +I EC+ ++AC+GGS  G YCAEGY GPYCA C  GY  G+  +C+SC G +K +A+
Sbjct:  424 TPVKFLDCLFESNDALEDGGALYSVASFDMIRGSKFFQNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDNDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTT-RRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSAL 662          
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.560e-33
Identity = 127/237 (53.59%), Postives = 156/237 (65.82%), Query Frame = 1
Query:  376 KITGCRFEGNMAT-DGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEK--NSDEVEDPDSCHWGVVCSRCTDHCGAPAGID---MDETTVPVCEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAV 1068
            K   C FE N A+ DGGA+Y+ A +D +  S+F+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN F+C  G++G E   + D     D C +  VCSRC   CG+        +D  T+P CE  PEG  TT   G  L TL+++ GFYR+S  S +I EC+ +KAC GGS  G YC+EGY GPYCA C  GY  G+  +C+SC G +K +A+
Sbjct:  403 KFLDCLFESNGASEDGGALYSVASFDVIRGSNFSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTT-RRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSAL 638          
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 5.950e-11
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  742 HCGAPAGIDMDETTVPVCEVV---PEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGG------SNAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQGYNKWAAV 1068
            +C A       ET+  +C  V   PEG++   + G  LETL L  G++R++  S  I EC+ + AC G       S+   YC  GY GPYCA C+ GY +G  ++C SC G + WA +
Sbjct:  421 YCNAGQYWVASETSCMMCADVALNPEGLSC-DSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDG-SYWAGM 536          
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.360e-8
Identity = 57/160 (35.62%), Postives = 77/160 (48.12%), Query Frame = 1
Query:  334 GSILDVEIGGFS-PSKITGCRFEGNMATDGGAIYTAAGYDEVVKSSFTRNFAAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFFCASGKYGLEKNSDEVEDPDSCHWGVVCSRCTDHCGA-PAGIDM-DETTVPVCEVV 804
            GS+ +VE    S P+  T C FE N A DGGAIY+AAGYD +  S F  N A                                    XXXXXXXXXX   N+++C SG+YG + ++DE E   +C +  VC+ C   C   P  + + ++  VP+CE V
Sbjct:  393 GSVWNVESPDDSGPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIAVGSRGAYLHSGLLVSLADTTFVGNRAGAAGLAVASLXXXXXXXXXXFESNTYYCQSGQYGYDISADEDEVSGTCRFDEVCTGCAVSCAEIPESVVVANDAFVPMCETV 552          
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Match: A0A7S2QV68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV68_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-7
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  793 CEVVPEGVNTTGNSGMKLETLDLMSGFYRTSNKSGEIVECYREKACKGGS--NAGRYCAEGYAGPYCAACVKGYGSGFQYSCRSCQG 1047
            C  + EG+N    S MKLE++ L  GF+RT+  S ++ EC  EKACKGG+  NA   C EG+ GPYC     G+       C  C+G
Sbjct:  124 CVPIVEGMNP-HMSNMKLESVWLDPGFWRTNGGSSDVRECITEKACKGGNATNATDICREGHEGPYCXXXXXGWTKTAFSICEQCRG 209          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FUB6_ECTSI2.440e-5250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWI3_9PHAE1.110e-4135.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.310e-3453.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE6.560e-3353.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF7_ECTSI5.950e-1137.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPF6_ECTSI1.360e-835.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2QV68_9STRA1.930e-742.53Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1218contigA-nodosum_M_contig1218:24809..26733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTT9
PFAMsBeta_helix,Chlam_PMP
Model size1071
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.59e-33
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.3873222-UTR-A-nodosum_M_contig1218:24808..252131680866641.3873222-UTR-A-nodosum_M_contig1218:24808..25213Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1218 24809..25213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.400847-CDS-A-nodosum_M_contig1218:25213..252951680866641.400847-CDS-A-nodosum_M_contig1218:25213..25295Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1218 25214..25295 +
1680866641.4114356-CDS-A-nodosum_M_contig1218:25453..256591680866641.4114356-CDS-A-nodosum_M_contig1218:25453..25659Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1218 25454..25659 +
1680866641.4227712-CDS-A-nodosum_M_contig1218:26027..263161680866641.4227712-CDS-A-nodosum_M_contig1218:26027..26316Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1218 26028..26316 +
1680866641.434819-CDS-A-nodosum_M_contig1218:26644..267331680866641.434819-CDS-A-nodosum_M_contig1218:26644..26733Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1218 26645..26733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1218.1.1prot_A-nodosum_M_contig1218.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1218 25214..26733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1218.1.1

>prot_A-nodosum_M_contig1218.1.1 ID=prot_A-nodosum_M_contig1218.1.1|Name=mRNA_A-nodosum_M_contig1218.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=222bp
MATDGGAIYTAAGYDEVVKSSFTRNFAAVQGGALLHSGVLVALTECTFES
NTAGEDGLAVMSLGMVNNITDLTFRNNSFFCASGKYGLEKNSDEVEDPDS
CHWGVVCSRCTDHCGAPAGIDMDETTVPVCEVVPEGVNTTGNSGMKLETL
DLMSGFYRTSNKSGEIVECYREKACKGGSNAGRYCAEGYAGPYCAACVKG
YGSGFQYSCRSCQGYNKWAAVG
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mRNA from alignment at A-nodosum_M_contig1218:24809..26733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1218.1.1 ID=mRNA_A-nodosum_M_contig1218.1.1|Name=mRNA_A-nodosum_M_contig1218.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1925bp|location=Sequence derived from alignment at A-nodosum_M_contig1218:24809..26733+ (Ascophyllum nodosum dioecious)
GTGACACGTTGGAGAGGGTGGGAGGCGTCAACGTGGAAGAGAAACGAGTC GCACTCTCTACATATTATTACCTTCAATCCTGCAACCAGGCGTGTATCGC AGCACGCCTGATTGCAGCGTAAGCGACGGTGCACATTCGCAAGCTGGTAA AGCTTCTTTACCTAGATCGTATTGAATTTGCAACTCCTATCGACCGAATA TCTTGAAGCCACGATTACCAAAGTAAATGACATGGGAATGCTTCACGCGA TCATCCAACTGTTCGTTTATTTTTACCAAGAGAGCGTGTTCTCGTGATAA TCACAACCTCCAGGTGTCGCCTTCTTTTCATCTGGTTCCATATTGGACGT GGAAATCGGTGGCTTCAGCCCCTCTAAAATCACTGGATGCCGTTTCGAGG GCAACATGGCCACGGACGGGGGGGCTATTTATACCGCTGCTGGCTACGAT GAGGTCGTGAAATCTTCTTTCACGAGAAATTTTGCAGGTAGAGTTTCTAG GTTTAAGGACCTTGGAAATTCCTGCCGGGAACGCCATAACAAATGGTGTC GCGCTTGATCCACTGCGTAGGAGGTCTCGAGAGGGGCATCGATACGCCAA CGCACCCTTACAACCCTGCTTTTCCCCTTATATTTGCATTACCAGCGGTC CAAGGCGGTGCACTCCTGCACTCCGGCGTCCTCGTAGCCCTTACTGAATG TACCTTCGAGTCGAACACGGCTGGCGAGGACGGGCTCGCAGTCATGAGCC TCGGGATGGTAAACAACATCACAGACCTAACGTTCCGAAACAATTCGTTC TTCTGCGCCTCGGGCAAGTACGGCTTGGAGAAGAACAGCGACGAGGTCGA GGTAATACCGTTTCCTACGAGGTGTACCAATTCAAGCCAAAGAATCTAAT AAGAAAGCCTACTTATTTGTCGTTGGGGTAATTTCATTACAGCAGGACAG TTGTGCGTGGAAATATCTCTCGAAAAGAATAAAATTATTTTAACTCCTTT GTATATATATATTGACCAAAAATCGAGGTTGATTTAAGCATGACTTAACC CAGAACACAAAATGTTTTCTAAGCTATAACTGTTTCGAACAATCAATTAC GCCCTCGTCGGTCGATAAAGGCCAACCCCTCCACTTCTTAAACGCATATC GCGAATCCATCAGCGAGTACACACACGACGACTGTTTCCCTCCTGCTCGT CACCGCTTTAACCCAGCAGGACCCTGATAGCTGCCATTGGGGTGTGGTAT GTTCCCGGTGCACAGATCATTGCGGCGCTCCCGCCGGCATCGACATGGAC GAAACAACGGTACCTGTTTGCGAGGTAGTCCCAGAGGGGGTGAACACTAC CGGGAACTCTGGGATGAAGCTCGAAACGCTTGACCTCATGTCCGGATTTT ACCGAACTTCTAATAAGAGCGGAGAAATCGTGGAGTGCTACCGAGAAAAA GCTTGCAAGGGAGGCTCAAACGCCGGTCGCTACTGCGCAGAAGGCTACGC AGGCCCATGTGAGGGATTATATCTGTCATATCCATGCCTGGAGGTCGTTC ACACTGTAGAACATTGAAATTTCATGGCGCCTTCTTAAACGCCTACAAAT TTTGCTCAGTCCTACATTTTTTCCCAGTGGGCTTTGTTTGGAATCGACAT GCTGAATTGGTAGCAGACTTGGTAAGCGTATCTTTGCATATTGTAGGGTT CGATTGCTTGGTAGATTTGATGACCAAGAGCTCCAGGTTTCATGCAAGTT TCTGTGGCTCGTGTTCCCGTGGCTCATGACACTTTGAAACCATCGCATCG CGCCCCCTCCGTCATGCATACACGACTTTGCCAAAGATTGTGCTGCCTGT GTTAAAGGGTACGGCTCCGGGTTTCAGTATAGCTGCCGCAGCTGCCAGGG GTATAATAAGTGGGCTGCTGTCGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1218:24809..26733+

>mRNA_A-nodosum_M_contig1218.1.1 ID=mRNA_A-nodosum_M_contig1218.1.1|Name=mRNA_A-nodosum_M_contig1218.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at A-nodosum_M_contig1218:24809..26733+ (Ascophyllum nodosum dioecious)
ATGGCCACGGACGGGGGGGCTATTTATACCGCTGCTGGCTACGATGAGGT
CGTGAAATCTTCTTTCACGAGAAATTTTGCAGCGGTCCAAGGCGGTGCAC
TCCTGCACTCCGGCGTCCTCGTAGCCCTTACTGAATGTACCTTCGAGTCG
AACACGGCTGGCGAGGACGGGCTCGCAGTCATGAGCCTCGGGATGGTAAA
CAACATCACAGACCTAACGTTCCGAAACAATTCGTTCTTCTGCGCCTCGG
GCAAGTACGGCTTGGAGAAGAACAGCGACGAGGTCGAGGACCCTGATAGC
TGCCATTGGGGTGTGGTATGTTCCCGGTGCACAGATCATTGCGGCGCTCC
CGCCGGCATCGACATGGACGAAACAACGGTACCTGTTTGCGAGGTAGTCC
CAGAGGGGGTGAACACTACCGGGAACTCTGGGATGAAGCTCGAAACGCTT
GACCTCATGTCCGGATTTTACCGAACTTCTAATAAGAGCGGAGAAATCGT
GGAGTGCTACCGAGAAAAAGCTTGCAAGGGAGGCTCAAACGCCGGTCGCT
ACTGCGCAGAAGGCTACGCAGGCCCATATTGTGCTGCCTGTGTTAAAGGG
TACGGCTCCGGGTTTCAGTATAGCTGCCGCAGCTGCCAGGGGTATAATAA
GTGGGCTGCTGTCGGT
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