mRNA_A-nodosum_M_contig121.63.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig121.63.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE) HSP 1 Score: 278 bits (711), Expect = 1.070e-71 Identity = 313/840 (37.26%), Postives = 412/840 (49.05%), Query Frame = 2
Query: 11 SGDTNSIISAVAGLLE--SPILGAFVGDEGTGKDAGTTTTPFGGPRNMTIAINHGQRGR-DSGETARSECVLGLLESTPSPGGSGSVLDQSIADGSALKAQKTLAPVIHKVRET----DATELAKPVSAMPDPAARRRTCAPGDFESIIGDLSPSGSSAPSDPTAERLEEMY-------------------PSSTPAPSSSPSARNFKISSSKSSAGSSSSLGDPVQSTTLTGKQRQPRVNDSSLAGDDANKKNKLDKRNRRATASPSSLNNLMEDLGLDAVALGKSGQDVDLPSSTNSHGGSSSSNSSPSLAPK---------GALEVPPPEVK-TPSPPMVRRTQLKSP-TRGQREIGD-NTSSPR---AAAQKRTSEAVSPAKPSNVDLRPTPQPESARGRLKSCLSSRKRTRGPQLGSAAFDA-----PAIGKPDTPDH----GPSCAVGSPPAAMRDVVKTPGGPV-QGALSGMSVQ-----------REP----VMETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRAAKSLFPLEKQGAHDDDTDQEEDELTAANSAQLAEWEGMDFAASPVEDFSSFD--DGNESMEWGDGREDREGDGVPPVKASSSPGRRRRRGSLAPKSPLRRSIAAFSKDVRRGATSLDSDDSDLEDDAEYRAVDNLNASISVSGTTADRLGAVAAVADHGPDAHNLSFSITTTQMHGIADSDSSVELTGTF-------------ANPPEQAAASAA----------------PAPACASDEDRGFDDATPDDSGMDLNDSCDLASTLCSASIREATS-SPGMRRASTGSLLDLVSEVGEIEQEVLSQ 2236
SG + + ++ G+ E P LG EG G TP R G GR DSG TA + V GLL+STPSPGG DQS +G + + L P+ + D+ SA RR TC P +F +I L S P P + R + PSS+ + S P A S AG++ G P +S + + DS G + K K ++ +RR+TASP++L L+EDLG G+D T+ HG +S+ + P+ GA E P + TPSPP+ RRT+ KSP + Q +G+ SPR +A KR+S ++S A P++ P P PESARGRLKSCLSSRKR RG G A+ + ++G PD + G GS P+ R GG V +GA G+ R P V+ETPRRVMFGAPMAAEFNHLSPSNRLTPMPSR AKSLFPLEK+ ++ + +EDE TAANSAQLAEWEG++ + +F FD +G ESM + +E + +SP SLA KSP+R+SI A+S+DVR D + D R V+NLNAS+ +A + GA AA + + N SFSI +Q+H + DSDSS+ELTGTF A P AA + A P A D +R DA DDS M+LNDS +L STL ASIR+A S +P +R S+GSLL +V +V E E+EVLSQ
Sbjct: 626 SGRSGATAVSMRGVFEPIDPALGGSAEREGLPVGGGGVITP----RFDRRVSGFGGGGRKDSGGTAGNGSVCGLLDSTPSPGGG---FDQSFGEG---EGRGKLPPMTGRAGAIAAILDSGTRGGRSSAKAAKNGRRYTCEPEEFGDVIAGLD----SEPDTPASSRDDSRVGEDAASPQEKEGSVETLSTPSSSASHDSCPEASGPAAQQSGQDAGANXXXGGPEESMDVDTDEDSF---DSPGGGSEDENKPK-EREDRRSTASPTTLGALLEDLGAQ-------GEDE-----TDEHGTVNSTEVVKASPPQENESGPSDDGAAENTSPVIAHTPSPPVARRTRSKSPASMKQVNVGELGLVSPRPALSAKNKRSSMSIS-ASPASKASAPRPAPESARGRLKSCLSSRKRARGGPAGVASSSSGRSPSASLGTPDATNSAGTDGSLAMAGSSPSPSRGGGAAAGGGVAEGAPPGVKTPGSSWGVSCGGGRGPASDMVLETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAKSLFPLEKK----EEAETDEDEDTAANSAQLAEWEGVEPMGTGDLEFDDFDGVNGGESM-FSLEQE---------AFSKASP-------SLAIKSPVRKSIMAYSEDVRAMGGGGPPSPYDSDFDPAARRVENLNASLLGPAASAAKRGASAASYE---EPQNRSFSINNSQLHRLNDSDSSLELTGTFTTGEDIRVTPVMAAAVPRDAAVAGADGGAAVGTGGTGDLSRPTAGGAGDAERSGGDADVDDS-MELNDSSELESTLHGASIRDAASPAPDPKRLSSGSLLSVVDDVEEFEEEVLSQ 1409
BLAST of mRNA_A-nodosum_M_contig121.63.1 vs. uniprot
Match: D7FTI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI0_ECTSI) HSP 1 Score: 199 bits (507), Expect = 5.540e-48 Identity = 218/586 (37.20%), Postives = 284/586 (48.46%), Query Frame = 2
Query: 11 SGDTNSIISAVAGLLE--SPILGAFVGDEGTGKDAGTTTTP-FGGPRNMTIAINHGQRGRDSGETARSECVLGLLESTPSPGGSGSVLDQSIADGSALKAQKTLAPVIHKVRET----DATELAKPVSAMPDPAARRRTCAPGDFESIIGDLSPSGSSAPSDPTAERLEEMY--PSSTPAPSSSPSARNFKISSSKSSAGSSSSL------------------GDPVQSTTLTGKQRQPRVNDSSLAGDDANKKNKLDKRNRRATASPSSLNNLMEDLGLDAVALGKSGQDVDLPSSTNSHGGSSSS-----NSSPSLAPKGALEVPPPEVK-TPSPPMVRRTQLKSPTRGQR----EIGDNTSSPRAAAQKRTSEAVSPAKPSNVDLRPTPQPESARGRLKSCLSSRKRTRGPQLGSAAFD----APAIGKPD------------------TPDHGPSCAVGSPP-AAMRDVVKTPGGPVQGALSGMSVQ--REPV----METPRRVMFGAPMAAEFNHLSPSNRLTPMPSRAAKSLFPLEKQGAHDDDTDQEEDELTAANSAQLAEWEGMDFAASPVEDFSSFD 1570
SG + + ++ G+ E SP LG EG G TP F R ++ ++ G++ DSG TA + V GLL+STPSPGG LDQS +G + + L P+ + D+ + SA RR TC P +F +I DL S P P + R +++P P SS SS SS G P +S + + + +D NK + D +RR+TASP++L L+EDLG A G+ + D + NS G +S S PS G E P + TPSPP+ RRT+ KSP +R E+G + P A+A+ + S A P++ P P PESARGRLKSCLSSRKR RG G A+ + ++G PD +P G A GS A VKTP GP G +SG R P +ETPRRVMFGAPMAAEFNHLSPSNRLTPMPSR AKSLFPLEKQ ++ + +EDE TAANSAQLAEWEG++ +F FD
Sbjct: 589 SGRSGATAVSMRGVFEPISPSLGGSADGEGVPVGGGCVVTPRF--DRRVSGSVGGGRK--DSGGTAGNGSVCGLLDSTPSPGGG---LDQSFGEG---EGRGKLPPMTGRAGAIAAILDSGTRGRRSSAKAGKNGRRNTCEPEEFGDVIADLD----SEPDTPASSRDHSRVGEDAASPQEKGEP-VETLSTPSSSSSLDSSPEXXXXXXXXXXXXXXXXXXXGGPEESMDVDTDEDS--FDSPGGGSEDENKPKERD--DRRSTASPTTLGALLEDLG----AQGE--DETDEHGTVNSTEGVKASPPQENESGPSD--DGVEENTSPIITHTPSPPVARRTRSKSPASMKRANVGEVGLASPRPAASARNKRSSMSISASPASKVSAPQPAPESARGRLKSCLSSRKRARGGPAGVASSSGRSPSASLGTPDLTNSAGTDGSLAMAGSSPSPSRGGGAAAGSGVIAGAPHGVKTP-GPSSG-VSGXXXXXXRGPASDMGLETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAKSLFPLEKQ----EEAETDEDEDTAANSAQLAEWEGVEPMGEGDLEFDDFD 1141
BLAST of mRNA_A-nodosum_M_contig121.63.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 4.440e-12 Identity = 81/205 (39.51%), Postives = 106/205 (51.71%), Query Frame = 2
Query: 1718 AFSKDVRRGATSLDSDDSDLEDDAEYRAVDNLNASISVSGTTADRLGAVAAVADHGPDAHNLSFSITTTQMHGIADSDSSVELTGTFANP------PEQAAASAAP-------------------------APACASDEDRGFDDATPDDSGMDLNDSCDLASTLCSASIREATS-SPGMRRASTGSLLDLVSEVGEIEQEVLSQ 2236
A+S+DVR D + D R V+NLNAS+ +A + GA AA + + N SFSI +Q+H + DSDSS+ELTGTF P AAA +AP A A + + DA DDS MDLN+S +L STL ASIR+A S +P +R S+GSLL +V +V E E+EVLSQ
Sbjct: 2 AYSEDVRAMGGGGPPSPYDSDFDPAARRVENLNASLLGPAASAVKRGASAASYE---EPQNRSFSINNSQLHRLNDSDSSLELTGTFTTSEEVRITPAMAAAVSAPRDXXXXXXXXXXXXXXXXXGDLSRPAAGGAGEAEPSVGDADVDDS-MDLNESSELESTLHGASIRDAASPAPDPKRLSSGSLLSVVDDVEEFEEEVLSQ 202 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig121.63.1 >prot_A-nodosum_M_contig121.63.1 ID=prot_A-nodosum_M_contig121.63.1|Name=mRNA_A-nodosum_M_contig121.63.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1479bp MTIAINHGQRGRDSGETARSECVLGLLESTPSPGGSGSVLDQSIADGSALback to top mRNA from alignment at A-nodosum_M_contig121:761060..779277- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig121.63.1 ID=mRNA_A-nodosum_M_contig121.63.1|Name=mRNA_A-nodosum_M_contig121.63.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=18218bp|location=Sequence derived from alignment at A-nodosum_M_contig121:761060..779277- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig121:761060..779277- >mRNA_A-nodosum_M_contig121.63.1 ID=mRNA_A-nodosum_M_contig121.63.1|Name=mRNA_A-nodosum_M_contig121.63.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=4437bp|location=Sequence derived from alignment at A-nodosum_M_contig121:761060..779277- (Ascophyllum nodosum dioecious)back to top |