mRNA_A-nodosum_M_contig121.61.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig121.61.1
Unique NamemRNA_A-nodosum_M_contig121.61.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig121.61.1 vs. uniprot
Match: A0A6H5KY64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY64_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.040e-20
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 3
Query:  588 EIGSLETELEALRKLKEEAARKKVVLKEGKSRRQERTNAADKRRGSVVELMDLETKSIQLEREALAWNEKLKMQMGLMLWSRPVKLLPHEVVLSYAAPHDSTLHHQV 908
            ++  LE EL AL   ++  A KK  L EGK+RR+ER  AA KR  SVV LM+LE KSI +E+EAL   EKL +Q+GL LW +P+ LLP +V++++AAPHD  L HQ+
Sbjct:  120 DVCGLEEELAALELRQQAVASKKAALLEGKARREERAKAAAKRSASVVRLMELEAKSIGIEKEALEMKEKLDVQLGLRLWCQPITLLPDKVMVAFAAPHDWGLKHQL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY64_9PHAE3.040e-2052.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig121contigA-nodosum_M_contig121:753835..760895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1306
Hectar predicted targeting categoryother localisation
Exons7
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig121.61.1prot_A-nodosum_M_contig121.61.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig121 754221..760866 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866638.3458886-UTR-A-nodosum_M_contig121:753834..7542201680866638.3458886-UTR-A-nodosum_M_contig121:753834..754220Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 753835..754220 -
1680866638.4289477-UTR-A-nodosum_M_contig121:760866..7608951680866638.4289477-UTR-A-nodosum_M_contig121:760866..760895Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 760867..760895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866638.3542912-CDS-A-nodosum_M_contig121:754220..7543581680866638.3542912-CDS-A-nodosum_M_contig121:754220..754358Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 754221..754358 -
1680866638.364198-CDS-A-nodosum_M_contig121:755041..7551851680866638.364198-CDS-A-nodosum_M_contig121:755041..755185Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 755042..755185 -
1680866638.3734338-CDS-A-nodosum_M_contig121:757397..7574941680866638.3734338-CDS-A-nodosum_M_contig121:757397..757494Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 757398..757494 -
1680866638.382348-CDS-A-nodosum_M_contig121:759039..7591671680866638.382348-CDS-A-nodosum_M_contig121:759039..759167Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 759040..759167 -
1680866638.3933191-CDS-A-nodosum_M_contig121:759632..7597451680866638.3933191-CDS-A-nodosum_M_contig121:759632..759745Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 759633..759745 -
1680866638.4041028-CDS-A-nodosum_M_contig121:760334..7604701680866638.4041028-CDS-A-nodosum_M_contig121:760334..760470Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 760335..760470 -
1680866638.4135625-CDS-A-nodosum_M_contig121:760731..7608661680866638.4135625-CDS-A-nodosum_M_contig121:760731..760866Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 760732..760866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig121.61.1

>prot_A-nodosum_M_contig121.61.1 ID=prot_A-nodosum_M_contig121.61.1|Name=mRNA_A-nodosum_M_contig121.61.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=297bp
MANMDEFPIQSVVVSPGSGSRDMEIPDGLLHALASTLNAASDEMEDKVAV
VHEHAEAVVETAWRLHTDAPILAEIDHAIATRAVGDGKAMGMVRRVRDMA
KQIKSNLVTEWKAWEVEVMTRLNIEAEKALAQVSKTGSASTARGNQIEEM
ISQTDWARRSIKREESRASIRSRIEKTEAALAQTRSEIGSLETELEALRK
LKEEAARKKVVLKEGKSRRQERTNAADKRRGSVVELMDLETKSIQLEREA
LAWNEKLKMQMGLMLWSRPVKLLPHEVVLSYAAPHDSTLHHQVPQQ*
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mRNA from alignment at A-nodosum_M_contig121:753835..760895-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig121.61.1 ID=mRNA_A-nodosum_M_contig121.61.1|Name=mRNA_A-nodosum_M_contig121.61.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7061bp|location=Sequence derived from alignment at A-nodosum_M_contig121:753835..760895- (Ascophyllum nodosum dioecious)
AGGACCTGATCCGATTTGTCGCGCCAGAGATGGCCAACATGGACGAGTTC CCGATTCAAAGCGTCGTGGTATCGCCGGGTTCTGGGTCTCGTGACATGGA GATCCCGGACGGCCTGCTTCATGCTCTCGCCTCGACGCTGAACGCCGCCT CTGATGAGATGGAGGTGTGTCCTTCTGTGCTTTTGTGTGTGATGTTTCAG GGTTGTTGAGATAGCTTTTTGTGGTACGTAAGCCTACAGGTAGGTGTTTG AAACTATAATAGTCTACGTAAGGATACCAGGTATGTGTTTTGAGAAATTT TGCTCCCGGAGTACTGTCTTTTACGTACAGGAAACTCGTCTAGACTTGAT AACCTGTGTTCGAAAATAAGTTTTTCTTCTTTTATTTTGCATTGATATAT ATATTTTTTTGTTGTTGTCGTAAAGGACAAGGTGGCCGTCGTCCACGAGC ACGCCGAGGCTGTCGTAGAGACTGCCTGGAGGCTTCATACGGACGCACCT ATTCTGGCGGAGATCGACCATGCTATCGCCACGAGAGCAGTCGGAGACGG AAAGGCGATGGGTGAGGGATGAGCGATGTCTATTTTTATAAAGTTTATTA AATCAGGGTTCATTAGATATGTTGATTTTAATTTTTTACTTTTTTTTCAA GAAAATGTTCTTATGCATTTGAGGCGCCCAGGTAAAGATATTGAAATTTT TGTGGATCTAGATTTTCAAAGGCATATTTTAGAAAAAGGCTTGGAAAAAA TCTTATTTATTGTCTTGCAAAGGCGGTTAATGAGCTATGAGACTCATGCT CAGCGATGGGAAACTTTTTTTTGTCTCGTTGCGGACGGTTTGATTTCTGT TATTTTTATATAAAAGTTTTGCGTTGGTCATTGTTTTCTGGATATCATAG ACCTTGTTGAACTTTACATGATATGTACAAGTCTAAATATACGACAGAGT GTTGTGTCTGGTGCACTTTATCGTTGTGCGACGGATATTATTCAGTATCT CATTGTGTTCCCTGAAACCTAAGGAGATACTTCAAACCCAATTTATTGTT TGTTGAAACAGCTTTTGGTCTTTTCCCACACAACTACTAACGGAAATAAT GACTTGCACTCTATGTAAATCCAACACGTCGCTCGTTCGTTTTGCTAAAG GCATGGTGAGGCGTGTTCGAGACATGGCGAAACAGATCAAGAGCAATCTG GTGACAGAGTGGAAGGCTTGGGAGGTGGAAGTGATGACGCGCTTGAACAT CGAGGCCGAGAAGGTGCTATTTATTGACATAGACTATTAATACTGATACT GTGGAAAGGATATCTTATTGCTATTAGACTAATACTGCAGAAGGGATATA TTATTGCTATTTATACCAGGTACTGTAGAAAGAACTTATTACTGCCATTA ATACTGGAGAAAGTATTGTTTTTCTGGGGGGAGTAGGCCATTGATCGACG ATTATTGCCTTTTTTTCATTATTTTCTGTCTATTAATAAAAGTTTTTCGC TTTTTTTTCGTTTTCTAGATTTTCTCTCCCGTGTGGCAGCTGACATTTTG TTTTTTATAAGGGTTCAACTCAAGAGGTCAAGGGTACATTTATGCCACAA CAGCGAAACCTACACCGTTGTTTTTAATATTAATGTTGGTGTTAATGCAA TACAACGGTTTTATTCACCTTGGAAGGCCTGTCGTTCTGTTTTGTGTAAA ACCGTTTCGTTTTTCTTCAATCTTACAGGCGCTCGCTCAGGTTTCTAAGA CGGGCTCGGCGTCAACGGCCCGGGGCAATCAAATCGAGGAAATGATTTCT CAAACCGACTGGGCGAGGCGTAGTATCAAGCGAGAGGAGTCTCGCGCCAG TATTCGGTGAGGTTTTCGTAAAACGTAGATGTCTTTTATGAGGTAGGCGT AAAACGTTTTGTGATCCGTGCGTCCAGTTCGTGAGAATGACGTCCTCTGC TTCTGCTTTTAGATTTGAGTGCAGAAGGCAAAACGCCTGCGACAAATCTG TCTTCGATGTGAGAAAATTCATTGATATCTTTTAAAACTTGACTCGAAAG AAAAAATCAAACCGACGACACTTAAATAAAATTTTTCTTCAATACCACGA ATTGTTAAAATTATCATCATTTCGATGTCCATGTCGTACTGGGGCGTTGT TGAGAAAAACGCGAGGAACGTAACTGCGTGGTGACGTCATATTAGGGGAC GTTTTGCTGTTGTCCCCTTGTATGACGTCACCACTACAGTTGTAGTGACG TTCATTGTTAAAGGAAAATCTGAACGCATCTAAACCTTCCAATTAGTCAA AAGGTTTAGGTGGGAACAGTGGCTGTAGGGACAAAAACTCTACATGGTAT TAGAAGGGTTCCCCAATGGAGTTACATAGGGTCAACAGTATAATATCGGG GAGAAGCCCACCGTTACACTGTACACTAACATTAATCACCATGTAGGGAC ACCAAAACAGAAGCGGACTAGTTATTATACAGTATTTTTGGACTAAGAGT TCCAGACTAAAGTAGTAATTCTTCAATTCTATAGATAAGTTAAGTTAAAA ATAGGGTTTGACGTCATGTGAAGGACCTCAAATACAGTAAGGTCATATAG ATAGTCGTGGATATGTTACTCATTATACTATAAAACCTACGTTGGGGATC AGAACTAGAATATACCTACAGTTATCTATGAACTTAATGTGAGGTCTCGA ATTACAAGGGGCATACTATACAGTATTTTTGGACTAAGAGTTCCAGACGA CGGTACAATAACATTCTATAGAGAAACTAGGTTAAAAATGGGGTTTGGTG CTGTTTATTGTTGTTGTGGCTCACCTACGGCCAATGGGCCGCAAGGAGCT CGCTTACTAATCCCAACTATTGCAATGTTGCCATCCTGCCTGTGGCCACT AATGATCTTCCCATCTCTCCCTTCCGCGGTTCTCGCCTTTAGGGGCATTT TATGCCGCGATGGTGGAAGTTAGTTCAGCACTGCTGTTACACCTCGACAA ATTGTTGAATTTATCTTACTCACCTTTTCACGCCCTACTATTACTAATAC TATTACCATTACTACGGAAACCAGAAAAAATAAATCGTCCTGTCATCGTT TGATTTTGAAGTCGCAAATTTGATTAATCGTGAAACTGTCAGGTTATCCA CTTCTAAATACTATTCGAGGTACTACTGTACAATTTATAATGTACTAATA AGACTGAATAGTACAGTAGTACCTCGAATAGTATTTAGTAGTGGATAACC TCTGTTACTATTAAAGAAGGCACTGAAACTGCGAGGTACTCTCTGTATTC CACTCAGGCGGTGTGGATTTTGTATCGCACAGTAATTTGTGTAAAATACA TTGTACCAGTAACTTGTGTTTGTACATTTTCTATGCATTATATTAAAACA GCTCTCGAATTGAGAAAACGGAAGCCGCTCTTGCCCAAACTCGGTCTGAG ATCGGCTCGCTCGAGACCGAATTGGAGGCGCTCCGGAAACTAAAAGAGGT GAGTTGATTTATCGATTGCACTTTTACATCGCTCTAGAACTGTGGTAGAG CCTATATACTCAAGTTCACAAATCTCAGGCGCGAACGGGGACAGGGGAAT ATTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGTAACTTTACCCG GTTGATCCATACTCGGCTAAAGTAAGTAATGACTATAGAGCTACATACGT AGTGTCAATACTAATACCGTTATATTAGATAAAAAGTTGAAACGTTTATG CTATTATTATCAGTATCGATAATTGTTATGCCGAACCGGGGTTCGCTGTC GATTTTCCCTCACAAAATCGCACACTGGTTGAAGTCTCTGCAATTTATCC AAATATACAAGCGTTTACTAAGGCCAACCGCTATGCACCACTCGAGTACA AAAATGAAACACAGAAATTTGCTCATTTCCGCGGCAATTCTTTCTGTGTT TTCTTTTTTGTATGTGCCCCGCTATTGACTGGGCGAATGAACGAAAAAAC AAAAATGAGACGGAGGCCCGTGGAGTACTGGCCATCCAAGTCTCTAGCCC CCTAGTTTGGCATTTGGAAATGAGGCCCACCTTGCGTCCTCAGAAGCCGG TTTTGTAATGTGCTCCGAAAGGCGTGAACAGTTCCGTAGGTGTGTTTTTT TTTGTGGCCACCTGCAGAAAAGTCTACGGAAATTTGTTTATTTTTGTTTT TTTGGAGTAGTTTTTTCGTACATGCAAGAAAAGATCTCAGTCCCATAGCG GAGAACGATTAATTCGTGGGTACACAAAATTCGACTTCACGGTCGACGAG GGAAAGGGACGGCTGAATCCTGCTCGCGAGAAAAATTAAGGCAAGCACCG CAGAAGGAAGGTGGCGAAATCCTGTGTGAGCTTTCTCCTGTGTGACCCCG GCTGGTGCGTCCACAAGTCTGACGTCGAGAATAAATGGGATGACAACACA CACACACACACACTCAAGAGGTTTTCGTAACAAGTATCATTAATCTCCCC TTGGGAAGATCAACGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGA ATTGCGCGGTTATGTGCAATTGAATAAAAACATACACACACACACACACG CATCGAGCTAGTGTTAGCCACACAGAATGCAGTATTCACAATCATGCGAT ATTGGAGCAGGGAGCTGACAAACAGTTTTCACAATTATGCGATGTTGAAG CATGGTTATCGTTCGTACACATGATTGATATACAGATTTATTTTTTTAAA CATAAAGTGTGCTTTCGATTGTTTGTTTAACCCTTTTGGTACTATCCGTC TGACAACGGCTATATATATATATTTATACAGTCCTGTGCTGCTTGCGCTA CTTTACATGGCCAGCCACCATAATCAGTCATTTTACAGTACACTGTTTAC ATACCCCAAGTAGTAAACGCCTACTTCGTCTCTAACCGTAGGTGTTAAGA GGTTGTTAGTACTAAACTAGTACGACATTTTTCTGGAAAGTTCATGTGAA GTCAAGCGAAGAACAAAGTTGGTTTGGGGCTTTCATTTTGTACCGTTCAC AGGTTTGCGGGGTTGATTCATGGTAGATCCTAGCTTAGCCGTATCTTGGG ACTGCTTTTAGTTTGGGAAGGTACTGTATTCGGGCTCCTGATCTCGCTGC ACAATCAAGGCTGGAAAATAAACGGGCGGTCGACCGCCTGTTAAGCCCTC TCAAGTCCCAAACGGGTTAAACATAAATGGGATTTTGGATGAATTGGAAA AGTTCTGACCTTGGCACAGCTGTTTGATATTTTACCCTCGTTTTTTAAAA CTCTACAAAGTATTGTAGCATTCAAGAAGGGAATTATACTGGAGCAAAAT ATTGAATTTTCTGAAGGACAAGGAGAAAAAATCGCATGGCGGCTACCATT TCTTTTCTTATGCGATTATGCTTGAAATAATACAGGATGCCGAGTTTTTC GGTTTTGAAAGCACATGTCATTATGTTTGTTCAAAAAAGGTGGTGTGGGT TTGTGTATAGCAAGTGTCTTGGGTTGTTGTTATTATCAAATTATTTGTTT TCACGCATCCATGAGATCATCTACTGTGTGCATTTTTCTGTTTTCTAATT TTGTATGCCTTTTTGTCTTTCTAAGTTTTGCATGTTTTATATTTCATTTT TTTTTTTTTTTTGGTCTCATTTGTTTGATGCTTTTTTTCATGTGTTTTTT GCCCTCACAGGAAGCGGCTCGCAAAAAGGTGGTACTGAAGGAAGGAAAGT CGCGAAGACAAGAGAGAACCAATGCCGCAGACAAGCGCCGGGGCTCTGTA GTGGAGCTCATGGATCTCGAAACTAAAAGCATTCAGCTTGAGCGGGAGGC TCTGGTGAGCGCGGTCTTTGTAATCAATAGCGCTCTAAATATAAACAGTG CCTGTCATCAAGCGTTGCTGACATATTACTGTAGTCCAATTAAGGCCTTC CTTGCTTCATTCCATTTTTTTTTTCATGGAGTGATACGTCGGTCGGTGTT GTCGTTGTCTTATTTATTTATTTTTATTTTTTCTTCTTCCTGCTTTCTGT CTTTTTTTTTTCTGGGCAACCCGCCCCTTTTTTAGATTTTGAACACTTTT CTTTTTCTTTTTCAAACATGCTCAGTATTTTCTAAAGAAAAATCTGAACG CATCTAGACCCTCGTACATTTTATTTATTTTTATTTTTTCTTTCATCTCA CTTAGAGCCGATGGACCTCATCATTACCATCCTGCCTGTGGTCACAAAGG ATCTTCCCATCTCTCCCCGGTTCACGCCTTACAATTTTTTTATCGCGATG CAAGTTCAGCACTCTTACAACTCGTCAACCAATGGTTGAATTTTACTTAC TCACGTTCCCACGCTTTCCGTTTCGAAAGAAAGAACACAAATCCTACTTT GGTAAGAATCGAACTCACGACCTCCGTACTAGCAGATGTACAGCTAGCCA CAAGACCACTCCGGCGACGAGCAGTATTATGGTTATCTCGCAACTATGAT ATACTTCGTACTATCGTATATTGATGTTGTGGTCCAGGCTTGGAACGAGA AGCTAAAGATGCAAATGGGGCTGATGCTGTGGAGCCGACCAGTCAAGCTT CTGCCTCATGAAGTAGTGTTATCCTATGCGGCACCTCACGACTCGACGCT CCACCACCAGGTGCCTCAACAATAGTGTTTTAGTGTGGTATTGCTTTCCC ACGTCTTCGCTCAAGCACCCAGTACATTCGTTAGTACAATGGTTCACAAA AGTGTATCTTGTGTTGTGTTGCTTTCCGACGACTACTCTCAGGCACCAGG CATTGTTCTAACATTACAGCTTATCTATGTTCCCACCTGACGTTTTGCCA TTTTTTTTGCTTCCCCCTGATTGGGTGGATGCTCAGAATAATCACAATAT ACTATCATAGAGGTTTATAGAGGTTTAGATGCGTTTATATTTTTATTGAA ACCCAGTTTCGATCCCCCTGCTCATTATTGCCCGAAGTATTGTGCTATTA ATAATTTATAGTAAGAGTGGGGAGTAATGGTTAGATATGGGAGACTGAAG CGCCTCGTACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig121:753835..760895-

>mRNA_A-nodosum_M_contig121.61.1 ID=mRNA_A-nodosum_M_contig121.61.1|Name=mRNA_A-nodosum_M_contig121.61.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=891bp|location=Sequence derived from alignment at A-nodosum_M_contig121:753835..760895- (Ascophyllum nodosum dioecious)
ATGGCCAACATGGACGAGTTCCCGATTCAAAGCGTCGTGGTATCGCCGGG
TTCTGGGTCTCGTGACATGGAGATCCCGGACGGCCTGCTTCATGCTCTCG
CCTCGACGCTGAACGCCGCCTCTGATGAGATGGAGGACAAGGTGGCCGTC
GTCCACGAGCACGCCGAGGCTGTCGTAGAGACTGCCTGGAGGCTTCATAC
GGACGCACCTATTCTGGCGGAGATCGACCATGCTATCGCCACGAGAGCAG
TCGGAGACGGAAAGGCGATGGGCATGGTGAGGCGTGTTCGAGACATGGCG
AAACAGATCAAGAGCAATCTGGTGACAGAGTGGAAGGCTTGGGAGGTGGA
AGTGATGACGCGCTTGAACATCGAGGCCGAGAAGGCGCTCGCTCAGGTTT
CTAAGACGGGCTCGGCGTCAACGGCCCGGGGCAATCAAATCGAGGAAATG
ATTTCTCAAACCGACTGGGCGAGGCGTAGTATCAAGCGAGAGGAGTCTCG
CGCCAGTATTCGCTCTCGAATTGAGAAAACGGAAGCCGCTCTTGCCCAAA
CTCGGTCTGAGATCGGCTCGCTCGAGACCGAATTGGAGGCGCTCCGGAAA
CTAAAAGAGGAAGCGGCTCGCAAAAAGGTGGTACTGAAGGAAGGAAAGTC
GCGAAGACAAGAGAGAACCAATGCCGCAGACAAGCGCCGGGGCTCTGTAG
TGGAGCTCATGGATCTCGAAACTAAAAGCATTCAGCTTGAGCGGGAGGCT
CTGGCTTGGAACGAGAAGCTAAAGATGCAAATGGGGCTGATGCTGTGGAG
CCGACCAGTCAAGCTTCTGCCTCATGAAGTAGTGTTATCCTATGCGGCAC
CTCACGACTCGACGCTCCACCACCAGGTGCCTCAACAATAG
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