mRNA_A-nodosum_M_contig121.50.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig121.50.1
Unique NamemRNA_A-nodosum_M_contig121.50.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig121.50.1 vs. uniprot
Match: D7FTG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.370e-5
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  289 TRPADEVSGGTEQPEAKKPKADVDPETAEPSKTLETPAETPVAEPAA 429
            TR  DEVSGGTE+P+AKK KAD     AEP+K +ET  E P +EPAA
Sbjct:  123 TRTVDEVSGGTEEPDAKKAKADAPEAAAEPTKVVETATEAPASEPAA 169
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTG0_ECTSI5.370e-561.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig121contigA-nodosum_M_contig121:674538..675605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001210.1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866637.8833702-UTR-A-nodosum_M_contig121:674537..6745491680866637.8833702-UTR-A-nodosum_M_contig121:674537..674549Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 674538..674549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866637.896648-CDS-A-nodosum_M_contig121:674549..6747501680866637.896648-CDS-A-nodosum_M_contig121:674549..674750Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 674550..674750 +
1680866637.9657853-CDS-A-nodosum_M_contig121:675149..6752841680866637.9657853-CDS-A-nodosum_M_contig121:675149..675284Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 675150..675284 +
1680866637.9763093-CDS-A-nodosum_M_contig121:675521..6756051680866637.9763093-CDS-A-nodosum_M_contig121:675521..675605Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 675522..675605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig121.50.1prot_A-nodosum_M_contig121.50.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig121 674550..675605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig121.50.1

>prot_A-nodosum_M_contig121.50.1 ID=prot_A-nodosum_M_contig121.50.1|Name=mRNA_A-nodosum_M_contig121.50.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=140bp
MLETLLKHLEAAASTNGDSTKEVAEPNGSSKDDAAPENGESIKGEVSKDD
AVPDAATLEAEVILEAEPASAEEPADKPAEDIVAPAAEGAAPTRPADEVS
GGTEQPEAKKPKADVDPETAEPSKTLETPAETPVAEPAA*
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mRNA from alignment at A-nodosum_M_contig121:674538..675605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig121.50.1 ID=mRNA_A-nodosum_M_contig121.50.1|Name=mRNA_A-nodosum_M_contig121.50.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1068bp|location=Sequence derived from alignment at A-nodosum_M_contig121:674538..675605+ (Ascophyllum nodosum dioecious)
CAGCAAGCTGTCATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGCTGC
CTCTACGAACGGGGACTCCACGAAGGAAGTCGCCGAGCCAAACGGTAGCA
GCAAGGATGACGCCGCCCCTGAAAACGGGGAAAGCATCAAGGGTGAAGTG
AGCAAAGATGACGCCGTACCGGACGCGGCCACCTTAGAGGCGGAGGTCAT
CTTGGAAGCGGAGGTCACCTTGGAGGCGGAGGAGCCCAAAAACGACGACA
CTGCTGCACCTGTGGAAGTGAGTTTTATACTGTAGAAGCTGTTCGACAGC
AGTAACTGTTGCACAGAAGCCACTAGCTAACCCCTGACCGAACGCCTTTA
ACGCTTTTGGAAAGCTAAAGCTTCGGTCATATGACTCTTTTATGCAGGCT
ATCAAGGCTTGTGACGCCGGTGAACAATCGGGACAGGCTGGATCACAGGG
AACTCAAGAATAAAACTTGGTGGATCCCTCAAATACGTGCGAATTCATGC
CAACCCTCGTTTCTCCCTTTTTATACTAAATATTACTATTAATACATGTG
CCTTGCATGTGTACCATGCCATCTGACATCATCTGGCCCTCGCTCTTCCA
ATTTCGCTTCAGCCGGCATCAGCGGAAGAACCAGCAGACAAGCCCGCCGA
AGATATCGTGGCTCCCGCCGCGGAGGGTGCGGCGCCTACCCGACCAGCGG
ACGAGGTGTCCGGTGGTACCGAGCAGCCCGAGGCCAAGAAGCCCAAGGTG
TGTATACTCGTGACGTTTTTGTGAATTATTACAGCGTTGACTTCAGCCTT
ACGAAACGTTTCTTGGTCGACGTCATTGGACTGTCTCAAAAATGGCGGAC
GTTTCCTTCTCCCCAATCCGATTCATAACGACGAATGTTTCTCCACAGCT
GTAGCACTTACTCTTGAATCTATACAGCAATCACATCCCTAACAAGCGCA
AACGAACCCGTTTTCACGTCCCGACTCTCTACAGGCGGATGTCGACCCCG
AGACTGCAGAGCCTTCCAAAACCCTAGAAACCCCAGCAGAGACTCCGGTT
GCGGAGCCGGCCGCGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig121:674538..675605+

>mRNA_A-nodosum_M_contig121.50.1 ID=mRNA_A-nodosum_M_contig121.50.1|Name=mRNA_A-nodosum_M_contig121.50.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at A-nodosum_M_contig121:674538..675605+ (Ascophyllum nodosum dioecious)
ATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGCTGCCTCTACGAACGG
GGACTCCACGAAGGAAGTCGCCGAGCCAAACGGTAGCAGCAAGGATGACG
CCGCCCCTGAAAACGGGGAAAGCATCAAGGGTGAAGTGAGCAAAGATGAC
GCCGTACCGGACGCGGCCACCTTAGAGGCGGAGGTCATCTTGGAAGCGGA
GCCGGCATCAGCGGAAGAACCAGCAGACAAGCCCGCCGAAGATATCGTGG
CTCCCGCCGCGGAGGGTGCGGCGCCTACCCGACCAGCGGACGAGGTGTCC
GGTGGTACCGAGCAGCCCGAGGCCAAGAAGCCCAAGGCGGATGTCGACCC
CGAGACTGCAGAGCCTTCCAAAACCCTAGAAACCCCAGCAGAGACTCCGG
TTGCGGAGCCGGCCGCGTAA
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