mRNA_A-nodosum_M_contig12083.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12083.2.1
Unique NamemRNA_A-nodosum_M_contig12083.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12083.2.1 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.610e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   37 GGFRKMIDWEAASGCFYWTLNRRKFLALLPENARNEIPDKGNSVIYFGDGHALSVEAE 210
            G F+ +IDW+AA GC Y  L+RRKFL+LLP + RN +PDKG+ V+Y+GDGH LS+EAE
Sbjct:  104 GAFKDVIDWQAAQGC-YSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSMEAE 160
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BLAST of mRNA_A-nodosum_M_contig12083.2.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 9.760e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   37 GGFRKMIDWEAASGCFYWTLNRRKFLALLPENARNEIPDKGNSVIYFGDGHALSVEAE 210
            G F+ +IDW+AA GC Y  L+RRKFL+LLP + RN +PDKG+ V+Y+GDGH LS+EAE
Sbjct: 1575 GAFKDVIDWQAAQGC-YSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSLEAE 1631
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BLAST of mRNA_A-nodosum_M_contig12083.2.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.100e-6
Identity = 23/58 (39.66%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:   52 MIDWEAASGCFYWT--------LNRRKFLALLPENARNEIPDKGNSVIYFGDGHALSV 201
            +I W A   C  W         L+RR FL  +P   RN +PD G+ V+YFGDGH  ++
Sbjct: 1734 VIAWSALEACLDWATAAAVWAALSRRAFLQNIPSQGRNTMPDIGDVVVYFGDGHTAAL 1791
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BLAST of mRNA_A-nodosum_M_contig12083.2.1 vs. uniprot
Match: A0A6G0RU20_9STRA (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RU20_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 6.240e-5
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   94 LNRRKFLALLPENARNEIPDKGNSVIYFGDGHALSVEAE 210
            L+RR++L L P+  RN IP+ G  V+YFGDGHAL+++ +
Sbjct: 1566 LDRREWLKLRPKETRNFIPEVGQVVVYFGDGHALALKED 1604
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BLAST of mRNA_A-nodosum_M_contig12083.2.1 vs. uniprot
Match: A0A0P1AKP8_PLAHL (CREB binding protein/P300 and related TAZ Zn-finger proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP8_PLAHL)

HSP 1 Score: 48.5 bits (114), Expect = 8.540e-5
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   94 LNRRKFLALLPENARNEIPDKGNSVIYFGDGHALSVEAE 210
            L+RR++L L P+   N IP+ G +VIYFGDGHAL+++ +
Sbjct: 1556 LDRREWLKLRPKETHNFIPEVGQTVIYFGDGHALALKED 1594
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE9.610e-1762.07Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI9.760e-1762.07Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZDW7_9STRA5.100e-639.66Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6G0RU20_9STRA6.240e-551.28Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A0P1AKP8_PLAHL8.540e-551.28CREB binding protein/P300 and related TAZ Zn-finge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12083contigA-nodosum_M_contig12083:4862..5292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size212
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.6e-17
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size210
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866634.3047996-CDS-A-nodosum_M_contig12083:4862..50231680866634.3047996-CDS-A-nodosum_M_contig12083:4862..5023Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 4863..5023 -
1680866634.3146734-CDS-A-nodosum_M_contig12083:5243..52921680866634.3146734-CDS-A-nodosum_M_contig12083:5243..5292Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 5244..5292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12083.2.1prot_A-nodosum_M_contig12083.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12083 4863..5292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12083.2.1

>prot_A-nodosum_M_contig12083.2.1 ID=prot_A-nodosum_M_contig12083.2.1|Name=mRNA_A-nodosum_M_contig12083.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
QRADGCSTSGSMGGFRKMIDWEAASGCFYWTLNRRKFLALLPENARNEIP
DKGNSVIYFGDGHALSVEAE
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mRNA from alignment at A-nodosum_M_contig12083:4862..5292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12083.2.1 ID=mRNA_A-nodosum_M_contig12083.2.1|Name=mRNA_A-nodosum_M_contig12083.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=431bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:4862..5292- (Ascophyllum nodosum dioecious)
CAACGCGCAGACGGCTGCTCAACTTCTGGCAGCATGGGGGGCTTTCGAAG
TGAGTCATTCTGCTGAATTTTCGACGTAGGAGGAACCACGTGTAACAATC
TGCTGTAGTCTGGGGTTTACCCCCGGAATTAGGCTTGCCCTTAACGCTTC
AACCACCAATCTTTGGTATGCTCATCTCCTTGCCGCTACTACCAACAGTA
TTTACATCCTCGAATCTTGGGAGTGCCTGAGCGAAGGTGCTCTTGCTTGT
TGACCGGTGCATTGCACAGAAATGATCGACTGGGAGGCAGCGAGCGGATG
CTTCTACTGGACGCTCAACCGCCGAAAGTTTCTGGCGCTCCTGCCGGAAA
ATGCGCGGAACGAAATACCGGACAAGGGTAACAGCGTGATTTACTTCGGC
GACGGGCACGCGCTCTCTGTCGAAGCCGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12083:4862..5292-

>mRNA_A-nodosum_M_contig12083.2.1 ID=mRNA_A-nodosum_M_contig12083.2.1|Name=mRNA_A-nodosum_M_contig12083.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:4862..5292- (Ascophyllum nodosum dioecious)
CAACGCGCAGACGGCTGCTCAACTTCTGGCAGCATGGGGGGCTTTCGAAA
AATGATCGACTGGGAGGCAGCGAGCGGATGCTTCTACTGGACGCTCAACC
GCCGAAAGTTTCTGGCGCTCCTGCCGGAAAATGCGCGGAACGAAATACCG
GACAAGGGTAACAGCGTGATTTACTTCGGCGACGGGCACGCGCTCTCTGT
CGAAGCCGAG
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