mRNA_A-nodosum_M_contig1208.11.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: F0Y1I9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I9_AURAN) HSP 1 Score: 62.0 bits (149), Expect = 1.660e-8 Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 3
Query: 2199 ACAPGGGNTGHWTQDEHTRFLKGMKKYQNRWQLIADMVGTRTPTQCRTHAQKY 2357
A P GHW +DEH +FL G++ + RW +A +VGTRT +Q R+HAQKY
Sbjct: 3 APTPAEARAGHWAEDEHAKFLAGLETFGRRWDRVARIVGTRTMSQVRSHAQKY 55
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: K3WND0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WND0_GLOUD) HSP 1 Score: 65.1 bits (157), Expect = 4.420e-8 Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query: 2232 WTQDEHTRFLKGMKKY-QNRWQLIADMVGTRTPTQCRTHAQKYNIKLNRR 2378
W++DEH RFL G+KK+ + W++IA VGTRTP Q +THAQKY K+NRR
Sbjct: 20 WSEDEHDRFLVGLKKFPRGPWRMIAAQVGTRTPRQVQTHAQKYYEKINRR 69
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: A0A1R2C6A6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C6A6_9CILI) HSP 1 Score: 62.4 bits (150), Expect = 9.550e-8 Identity = 24/51 (47.06%), Postives = 39/51 (76.47%), Query Frame = 3
Query: 2226 GHWTQDEHTRFLKGMKKYQNRWQLIADMVGTRTPTQCRTHAQKYNIKLNRR 2378
GHW+++EHTRF++G++ Y W+ + + VGTR+ Q R+HAQKY +KL ++
Sbjct: 15 GHWSKEEHTRFVQGIQMYGKDWKKVVECVGTRSSNQIRSHAQKYFLKLEKK 65
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: L1IG99_GUITC (Uncharacterized protein (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IG99_GUITC) HSP 1 Score: 58.9 bits (141), Expect = 2.020e-7 Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 3
Query: 2220 NTGHWTQDEHTRFLKGMKKYQNRWQL---IADMVGTRTPTQCRTHAQKYNIKLNRRR 2381
N WT++EH RFL+ +KKY L +++ VGTRTP Q R+HAQKY ++LN+ R
Sbjct: 2 NQSQWTKEEHDRFLQALKKYLPSGALAKKVSEFVGTRTPLQVRSHAQKYFLRLNKNR 58
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: A0A418AIQ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AIQ7_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.630e-7 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 3
Query: 2130 RFSSPPPSRGVTPARHTDLAATSACAPGGGNTGHWTQDEHTRFLKGMKKY-QNRWQLIADMVGTRTPTQCRTHAQKYNIKL 2369
++ SP P PA A+++A A TG WT EH RFL ++ Y Q W+ IA VGTRTP Q +THAQKY KL
Sbjct: 2 KYFSPQPMHSSAPAVDRKRASSTAMA-----TGTWTSCEHKRFLAAIELYPQGPWKAIAKYVGTRTPRQAQTHAQKYREKL 77
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: A0A7S4E2L3_9STRA (Hypothetical protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S4E2L3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 3.040e-7 Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 2214 GGNTGHWTQDEHTRFLKGMKKYQNRWQLIADMVGTRTPTQCRTHAQKYNIKLNRRR 2381
G TG WT +EHTRFL G++ + +W +AD+VG+RT Q R+HAQKY KL + R
Sbjct: 20 GEKTGRWTDEEHTRFLHGLELFGKKWTKVADVVGSRTTVQVRSHAQKYFQKLEKDR 75
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: W2K383_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2K383_PHYPR) HSP 1 Score: 63.2 bits (152), Expect = 3.740e-7 Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = 3
Query: 2208 PGGGNTGH-----WTQDEHTRFLKGMKKYQ-NRWQLIADMVGTRTPTQCRTHAQKYNIKLNRRR 2381
PG T H WT DEH RFL+G+++Y W+ IA VGTRTP Q THAQKY K+ RRR
Sbjct: 62 PGDRQTPHRHGLPWTTDEHDRFLQGLERYPCGPWKAIAAFVGTRTPRQTMTHAQKYRQKIQRRR 125
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: A0A833THA5_PHYIN (Myb-like DNA-binding domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833THA5_PHYIN) HSP 1 Score: 63.2 bits (152), Expect = 3.960e-7 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 3
Query: 2232 WTQDEHTRFLKGMKKYQNR-WQLIADMVGTRTPTQCRTHAQKYNIKLNRRR 2381
WT DEH RFL+G+++Y + W+ IA VGTRTP Q THAQKY K+ RRR
Sbjct: 78 WTTDEHDRFLQGLERYPSGPWKAIAAFVGTRTPRQTMTHAQKYRQKIQRRR 128
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: H3GUL3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUL3_PHYRM) HSP 1 Score: 62.8 bits (151), Expect = 4.420e-7 Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 3
Query: 2232 WTQDEHTRFLKGMKKYQNR-WQLIADMVGTRTPTQCRTHAQKYNIKLNRRR 2381
WT DEH RFL+G+++Y + W+ +A VGTRTP Q THAQKY K+ RRR
Sbjct: 73 WTTDEHDRFLQGLERYPSGPWKTVAAFVGTRTPRQTMTHAQKYRQKIQRRR 123
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Match: A0A1R2BI40_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BI40_9CILI) HSP 1 Score: 60.1 bits (144), Expect = 6.100e-7 Identity = 23/51 (45.10%), Postives = 38/51 (74.51%), Query Frame = 3
Query: 2226 GHWTQDEHTRFLKGMKKYQNRWQLIADMVGTRTPTQCRTHAQKYNIKLNRR 2378
GHW+++EHTRF++G++ + W+ + + VGTR+ Q R+HAQKY KL ++
Sbjct: 15 GHWSKEEHTRFVQGIQMHGKNWKKVVECVGTRSSNQIRSHAQKYFAKLEKK 65 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1208.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1208.11.1 >prot_A-nodosum_M_contig1208.11.1 ID=prot_A-nodosum_M_contig1208.11.1|Name=mRNA_A-nodosum_M_contig1208.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=572bp MKRAAVPRARTSTHLSSRRITRSKKTLTHKISKISDGKPGTKRPWISNAAback to top mRNA from alignment at A-nodosum_M_contig1208:81598..85812+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1208.11.1 ID=mRNA_A-nodosum_M_contig1208.11.1|Name=mRNA_A-nodosum_M_contig1208.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4215bp|location=Sequence derived from alignment at A-nodosum_M_contig1208:81598..85812+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1208:81598..85812+ >mRNA_A-nodosum_M_contig1208.11.1 ID=mRNA_A-nodosum_M_contig1208.11.1|Name=mRNA_A-nodosum_M_contig1208.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at A-nodosum_M_contig1208:81598..85812+ (Ascophyllum nodosum dioecious)back to top |