mRNA_A-nodosum_M_contig1207.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI) HSP 1 Score: 234 bits (596), Expect = 7.820e-64 Identity = 178/582 (30.58%), Postives = 276/582 (47.42%), Query Frame = 1
Query: 28 SPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRN------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGG-----GALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQADPRRVPEVV---DGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVK--KEAKIPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
+PYE+W G+ P H++ +G Y ++ ++ K+ + +KC F+G P+ + V + R +ER+ + K+ D T + N QE HE E+++ ++ TQ L+ PT+ A + V +H P + + D L ++ + + +P+N +AM+S + ++W++A E+E+ M N V+ V KD IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP SIR+LLA AA D E+ D + A P V G + +V++VDDIL D M L +F +KD+G+A Y +G I R+R R L Q +Y+++++KR+N++ K +P +G TLS+ D P+ PEE+E M PY AVGA+M+ T TRPD+A A+ +R+ NPG H K V I +YL TK+ + YG L ++ YTD+ + D +S+SG V L GA+SW S
Sbjct: 168 TPYEIWKGRKPNLKHIKVWGCPAYVKK-LQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLAEGSHGKEIELDETQE--ETNETTAAQE-HEMEFEQPFFDVLKSTQ---------------------------------RLQSPTIVAPEPAIVQEQVNEXXXXXXXXXXXXXXLEQIQQPLNPIH--EPLRRSSRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQSLDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNEEPCVYKRFSGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESE--LKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSWKS 707
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 201 bits (510), Expect = 5.400e-54 Identity = 137/402 (34.08%), Postives = 203/402 (50.50%), Query Frame = 1
Query: 709 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA----------------------DPRRVPEV---------------------------------------VDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAK--IPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
+P++ +AM+S + D+W +A E+EM M N V+ V K IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP SIR+LLA AA D E+ D + A D +V ++ + G + + +V++VDDIL D +M L +F +KD+G+A Y +G I R+R R L Q +Y+++++KR+N++K + +P G +LS+ + P+ EE+E M PY AVGA+M+ T TRPD+A A+ +R+ NPG H K V I +YL TK+ + YG L ++ YTD+ + D +S+SG V L GAISW S
Sbjct: 92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKISGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKS 490
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI) HSP 1 Score: 207 bits (527), Expect = 1.430e-53 Identity = 176/640 (27.50%), Postives = 275/640 (42.97%), Query Frame = 1
Query: 28 SPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRN------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGG-----GALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA-------------DPRRVPEVVD------------------------------------------------GEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVK--KEAKIPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
+PYE+W G+ P H++ +G Y ++ ++ K+ + +KC F+G P+ + V + R +ER+ + K+ D T + N QE HE E+++ ++ TQ L+ PT+ A + V +H P + + D L ++ + + +P+N +AM+ + ++W++A E+E+ M N V+ V KD IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP SIR+LLA AA D E+ D + A P + D G + +V++VDDIL D M L +F +KD+G+A Y +G I R+R R L Q +Y+++++KR+N++ K +P +G TLS+ D P+ PEE+E M PY AVGA+M+ T TRPD+A A+ +R+ NPG H K V I +YL TK+ + YG L ++ YTD+ + D +S+SG V L G +SW S
Sbjct: 504 TPYEIWKGRKPNLKHIKVWGCPAYVKK-LQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLAEGSHGKEIELDETQE--ETNETTAAQE-HEMEFEQPFFDVLKSTQ---------------------------------RLQSPTIVAPEPAIVQEQVNEXXXXXXXXXXXXXXLEQIQQPLNPIH--EPLRRSNRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVYKRFSGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGESE--LKLKGYTDASFASDKDDSKSISGYVFTLNGGTVSWKS 1101
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438GKY6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GKY6_VITVI) HSP 1 Score: 207 bits (526), Expect = 2.090e-53 Identity = 130/347 (37.46%), Postives = 189/347 (54.47%), Query Frame = 1
Query: 706 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQADPR-RVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
++P + QAM E + W A + EM M N V+D V P IG K ++K K G +E+YK +LVA+GF Q EG+ YTE +SP S+R++LA A D EL+ D + A + E V G V++VDDIL D+ ++ L + F +KDMG+A Y +G I R+R L Q ++ +++RF +K + + K D P+N E+E+MK PY AVG+LM+A TRPDIA AV + R+ NPG+ H KA K+ +YL TK++ + Y + L + Y+DSD C+D+R+S SG + +LA GAISW S
Sbjct: 883 NDPESFSQAMNCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKAKLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVSGSKVCFFVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETHINKVLERFRMKN-----CSPSVSPIVKGDSFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRS 1223
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY) HSP 1 Score: 203 bits (517), Expect = 6.720e-53 Identity = 184/629 (29.25%), Postives = 270/629 (42.93%), Query Frame = 1
Query: 28 SPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRNFPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGGGALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA-------------------------------------------------------------DPRRVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAK--IPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
+PYELW GK P+ H++ +G + R+S K+ P+ ++C+F+G P+ TG + V R A+ +E S E T+ L + + V SE+ EQ + PT P+ N+ S TR + P R L I E +G ++ +P ++AM + + W+KA E+EM M N V+ V +P+ IG K +YKRK+G GKVE YK RLVA+G+ Q G+ Y E +SP SIR+LL+ AA D E+ D + A D V + V G ++++VDDIL D M+ L F +KD+G+A Y +G + R+RK R L Q Y++ ++ RF+++ K P G LSK P+ EE+E+M+ PY AVG+LM+A TRPDI AV V+R+ NPG H AV I +YL TK + + +G + L ++ YTDSD + +D R+S+SG V L KGAISW S
Sbjct: 168 TPYELWTGKKPSLNHIKIWGCPSHVRKS-NVDKLGPRSDRCLFVGYPK-MSTGFYFYNPSEQKVFVSRNAIFL--------------------------------EEDYSLNESRTKVTLEEQNDRPMTVPSENNEEQ-------------VIVPTEPS--------NMQEPRRS-TRIIRPPVRL------TLLNEIYQMESDGFDN-------------------DPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKVSGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRS 712
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: UPI001131160E (DDE-type integrase/transposase/recombinase n=2 Tax=Escherichia coli TaxID=562 RepID=UPI001131160E) HSP 1 Score: 201 bits (512), Expect = 3.870e-52 Identity = 179/641 (27.93%), Postives = 270/641 (42.12%), Query Frame = 1
Query: 10 STNEGKSPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCVFMGIPRN-------FPTGTVSVLLVRSRNIVERQAVQWIDGPKKTGRDGTGSTPQLNVQELGQEQHEHEWQEAISELEGETQGALSDHGEDTQEVLSEDEREQQHEEEGAEARSASLEGPTVPALRKLAIDGNVPPILSSRTRSRKTPHRCGGGALHCFLPAIEAEEENGVEDVLACDDGGQMAMQATLDVSEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA---------------------EQADPRRVPEV---------------------------------------VDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNV--KKEAKIPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
S + +PYE+W G+ P+ H++ +G Y ++ + K+ + E+ F+G P++ PT V++ R +E+Q VQ G G +L ++ SD D ++ P+ + + +D + TR P R G LH E E+E + + D +A DV + W A ++E+ M +N V+D V P+ + IG K ++K+KIG DGKVE YK RLVA+GF Q +G+ Y E +SP SIR+LLA AA D E+ D E D +V ++ V A +V++VDDIL D + L F +KD+G+A Y +G I R+R R + Q LY+E ++KRFN+ K +P G LSK P+ PEE+++M PY A+G+LM+A TRP+IA AV +R+ NPGL H A+ I +YL TK+ + YGG L ++ YTDSD + +D R+S S V + GA+SW S
Sbjct: 241 SKSVSSTPYEIWHGRKPSLKHVKIWGCPAYIKK-LNTDKLETRSERGRFVGYPKDSFGYYFYLPTSQ-KVVISRDATFLEQQFVQ---------EGGKGRQIELELEN-------------------------SDQPTDQMDID--------------------------PSSQPIPVDETSTAVPRRTTRVSHPPVRYG--FLH------EEEQELSTHEEVDHGDDPLTYEEAISDVYSSK-------------WIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTTFLNGYIEENIFMEQPKGFESQDGSKVCKLKRSIYGLKQASRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDSAITFLVLYVDDILLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKRFNMLDSKRGLLPVRHGIH-LSKEMSPKTPEERDKMARIPYASAIGSLMYAMLCTRPNIAYAVSLTSRYQSNPGLEHWIAIKNILKYLRRTKDLFLIYGGGD--LQLDGYTDSDFQSDIDDRKSTSRYVFICNGGAVSWKS 795
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438E557_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E557_VITVI) HSP 1 Score: 196 bits (498), Expect = 1.540e-51 Identity = 124/360 (34.44%), Postives = 191/360 (53.06%), Query Frame = 1
Query: 727 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA---------------------DPRRVPEVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
Q +S + ++W +A + EM M +N V+D V P+ IG K ++K K G + +YK RLVA+GF Q EG+ Y E +SP S S R+++A A D EL D + A D +++ E + +++V++VDDIL + D ++ L KF +KD+G+A + +G I R+R L Q Y++ ++ RF + A G ++K D+ P+N EK++M+ FPY VG+LM+A TRPDIA V + R+ N G+ H K ++ +YL TK++ +TY + L + Y+DSD CLD+RRS SG + MLA GA+SW S
Sbjct: 220 QVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPEGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLWEQI-----IILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSN-----CAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASVVGSLMYAQVCTRPDIAYIVGMLGRYLSNLGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKS 568
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438EN28_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EN28_VITVI) HSP 1 Score: 196 bits (498), Expect = 3.210e-51 Identity = 134/381 (35.17%), Postives = 192/381 (50.39%), Query Frame = 1
Query: 706 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA-------------DPRRVPEVVDGEAEMV----------------------VVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
++P + QAM E + W A + EM M N V+D V P IG K ++K K G +E+YK RLVA+GF Q EG+ YTE +SP S+R++LA A D EL+ D + A P P DGE + +V++VDDIL D+ ++ L + F +KDMG+A Y +G I R+R L Q Y+ +++RF +K + + K D P+N E+E+MK PY AVG+LM+A TRPDIA AV + R+ NPG+ H KA K+ +YL TK++ + Y + L + Y+DSD C+D+R+S SG + +LA GAISW S
Sbjct: 236 NDPESFSQAMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSS-DGEQLVCKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKN-----CSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRS 609
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A438FC14_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FC14_VITVI) HSP 1 Score: 198 bits (504), Expect = 3.490e-51 Identity = 130/373 (34.85%), Postives = 195/373 (52.28%), Query Frame = 1
Query: 727 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQA---------------------DPRRVP-----EVVD--------GEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAKIPAASGAQTLSKADE------PQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
Q +S + ++W +A + EM M +N V+D V PK IG K ++K K G + +YK RLVA+GF Q EG+ Y E +SP S S R+++A A D EL D + A D +++ E VD G +++V++VDDIL + D ++ L KF +KD+G+A + +G I R+R L Q Y++ ++ RF + A G ++K D+ P+N EK++M+ FPY AVG+LM+A TRPDIA V + R+ NPG+ H K ++ +YL TK++ +TY + L + Y+DSD CLD+RRS SG + MLA GA+SW S
Sbjct: 421 QVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKREHVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSN-----CAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKS 787
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY) HSP 1 Score: 198 bits (503), Expect = 1.330e-50 Identity = 131/344 (38.08%), Postives = 194/344 (56.40%), Query Frame = 1
Query: 706 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDAEQADPRRVPEVVDGEA--EMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFNVKKEAK--IPAASGAQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDVGACLDTRRSVSGAVLMLAKGAISWHS 1725
++P ++AM + + W+KA E+EM M N V+ V +P+ IG K +YKRK+G GKVE YK RLVA+G+ Q G+ Y E +SP SIR+LL+ AA D E+ D + A ++G E+ + V ++ A+ + M+ L F +KD+G+A Y +G + R+RK R L Q Y++ ++ RF+++ K P G LSK P+ EE+E+M+ PY AVG+LM+A TRPDI AV V+R+ NPG H AV I +YL TK + + +G + L ++ YTDS+ + +D R+S+SG V L KGAISW S
Sbjct: 546 NDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTA-------FLNGNIREEIYMDQPVGFHISWARIKRAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRS 879 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1207.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1207.10.1 >prot_A-nodosum_M_contig1207.10.1 ID=prot_A-nodosum_M_contig1207.10.1|Name=mRNA_A-nodosum_M_contig1207.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=576bp VTTSTNEGKSPYELWFGKSPTAYHLRPFGTVGYARQSVREHKMAPKGEKCback to top mRNA from alignment at A-nodosum_M_contig1207:178959..180917- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1207.10.1 ID=mRNA_A-nodosum_M_contig1207.10.1|Name=mRNA_A-nodosum_M_contig1207.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1959bp|location=Sequence derived from alignment at A-nodosum_M_contig1207:178959..180917- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1207:178959..180917- >mRNA_A-nodosum_M_contig1207.10.1 ID=mRNA_A-nodosum_M_contig1207.10.1|Name=mRNA_A-nodosum_M_contig1207.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at A-nodosum_M_contig1207:178959..180917- (Ascophyllum nodosum dioecious)back to top |