mRNA_A-nodosum_M_contig1206.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1206.2.1
Unique NamemRNA_A-nodosum_M_contig1206.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-17
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT  L+L GSS AKKYEDI AAPEERA RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITATLALGGSSAAKKYEDIDAAPEERA-RGITINTAHVE 69
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BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: UPI001AEB9707 (GTP-binding protein n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AEB9707)

HSP 1 Score: 78.6 bits (192), Expect = 2.560e-17
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT+ L+  G + AKKYEDI AAPEE+A RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITMTLAKSGGATAKKYEDIDAAPEEKA-RGITINTAHVE 69
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BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A0G1U425_9BACT (Elongation factor Tu n=1 Tax=Microgenomates group bacterium GW2011_GWF2_47_9 TaxID=1618541 RepID=A0A0G1U425_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 2.930e-17
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLT+AITVVL+  G + AKKYEDI AAPEER  RG+TIN    E
Sbjct:   15 NIGTIGHVDHGKTTLTSAITVVLAKKGLAVAKKYEDIDAAPEERQ-RGVTINLSHQE 70
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A328B4G3_9CAUL (Elongation factor Tu (Fragment) n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A328B4G3_9CAUL)

HSP 1 Score: 79.7 bits (195), Expect = 6.680e-17
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT+VL+  G + AKKYEDI AAPEE+A RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITMVLAKTGGATAKKYEDIDAAPEEKA-RGITINTAHVE 69
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A6B3ULB9_9CAUL (Elongation factor Tu (Fragment) n=1 Tax=Caulobacter sp. 17J65-9 TaxID=2709382 RepID=A0A6B3ULB9_9CAUL)

HSP 1 Score: 75.5 bits (184), Expect = 8.390e-17
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITIN 156
            NIGTIGHVDHGK TLTAAIT+ L+  G + AKKY++I AAPEE+A RGITIN
Sbjct:   14 NIGTIGHVDHGKTTLTAAITMTLAKSGGATAKKYDEIDAAPEEKA-RGITIN 64
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A7C9PXU0_9CYAN (Elongation factor Tu n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PXU0_9CYAN)

HSP 1 Score: 80.5 bits (197), Expect = 2.160e-16
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT+ L+  GS+ AKKYEDI AAPEE+A RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITLALAAQGSAEAKKYEDIDAAPEEKA-RGITINTAHVE 69
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A3D1PIW0_9CYAN (Elongation factor Tu (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1PIW0_9CYAN)

HSP 1 Score: 74.7 bits (182), Expect = 2.710e-16
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT+ L+  G + AKKY++I AAPEE+A RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITMTLAALGQAKAKKYDEIDAAPEEKA-RGITINTAHVE 69
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A7C6FPS0_9FIRM (Elongation factor Tu (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A7C6FPS0_9FIRM)

HSP 1 Score: 74.3 bits (181), Expect = 3.370e-16
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT+VLS  G + AK Y++I  APEE+A RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITMVLSAGGHAQAKHYDEIDKAPEEKA-RGITINTSHVE 69
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: UPI001FB86B9B (GTP-binding protein n=1 Tax=Brevundimonas terrae TaxID=363631 RepID=UPI001FB86B9B)

HSP 1 Score: 74.3 bits (181), Expect = 3.650e-16
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLTAAIT+ L+  G + AK Y DI AAPEE+A RGITIN    E
Sbjct:   14 NIGTIGHVDHGKTTLTAAITITLAKAGGATAKAYADIDAAPEEKA-RGITINTSHVE 69
[Close]
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Match: A0A0G0SG06_9BACT (Elongation factor Tu n=1 Tax=Candidatus Woesebacteria bacterium GW2011_GWA1_40_43 TaxID=1618553 RepID=A0A0G0SG06_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.000e-16
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGITINCERSE 171
            NIGTIGHVDHGK TLT+AIT+VL+  G + AKKYEDI +APEE+  RG+TIN    E
Sbjct:   17 NIGTIGHVDHGKTTLTSAITMVLAKQGLAVAKKYEDIDSAPEEKE-RGVTINLSHQE 72
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1206.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPC8_9STRA2.300e-1778.95Elongation factor Tu, chloroplastic n=2 Tax=Strame... [more]
UPI001AEB97072.560e-1771.93GTP-binding protein n=1 Tax=Asticcacaulis solisilv... [more]
A0A0G1U425_9BACT2.930e-1771.93Elongation factor Tu n=1 Tax=Microgenomates group ... [more]
A0A328B4G3_9CAUL6.680e-1773.68Elongation factor Tu (Fragment) n=5 Tax=Alphaprote... [more]
A0A6B3ULB9_9CAUL8.390e-1773.08Elongation factor Tu (Fragment) n=1 Tax=Caulobacte... [more]
A0A7C9PXU0_9CYAN2.160e-1673.68Elongation factor Tu n=1 Tax=Oscillatoria sp. SIO1... [more]
A0A3D1PIW0_9CYAN2.710e-1668.42Elongation factor Tu (Fragment) n=1 Tax=Cyanobacte... [more]
A0A7C6FPS0_9FIRM3.370e-1668.42Elongation factor Tu (Fragment) n=1 Tax=Clostridia... [more]
UPI001FB86B9B3.650e-1668.42GTP-binding protein n=1 Tax=Brevundimonas terrae T... [more]
A0A0G0SG06_9BACT4.000e-1666.67Elongation factor Tu n=1 Tax=Candidatus Woesebacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1206contigA-nodosum_M_contig1206:152421..152591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D1J725
Preferred nametufA
PFAMsGTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Model size171
Max annot lvl2759|Eukaryota
KEGG koko:K02358
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
Exons1
Evalue1.05e-18
EggNOG OGsCOG0050@1|root,KOG0460@2759|Eukaryota
Descriptiontranslation elongation factor activity
Cds size171
COG categoryJ
BRITEko00000,ko03012,ko03029,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866630.88043-CDS-A-nodosum_M_contig1206:152420..1525911680866630.88043-CDS-A-nodosum_M_contig1206:152420..152591Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1206 152421..152591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1206.2.1prot_A-nodosum_M_contig1206.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1206 152421..152591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1206.2.1

>prot_A-nodosum_M_contig1206.2.1 ID=prot_A-nodosum_M_contig1206.2.1|Name=mRNA_A-nodosum_M_contig1206.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
NIGTIGHVDHGKITLTAAITVVLSLDGSSNAKKYEDIGAAPEERAARGIT
INCERSE
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mRNA from alignment at A-nodosum_M_contig1206:152421..152591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1206.2.1 ID=mRNA_A-nodosum_M_contig1206.2.1|Name=mRNA_A-nodosum_M_contig1206.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1206:152421..152591+ (Ascophyllum nodosum dioecious)
AACATTGGAACAATTGGTCATGTGGATCATGGTAAAATAACTTTAACTGC
TGCGATTACTGTTGTTCTATCTTTAGATGGTAGCTCAAATGCAAAGAAAT
ATGAAGATATCGGTGCAGCACCTGAAGAACGCGCAGCACGTGGAATTACT
ATTAATTGCGAGCGTAGTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1206:152421..152591+

>mRNA_A-nodosum_M_contig1206.2.1 ID=mRNA_A-nodosum_M_contig1206.2.1|Name=mRNA_A-nodosum_M_contig1206.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1206:152421..152591+ (Ascophyllum nodosum dioecious)
AACATTGGAACAATTGGTCATGTGGATCATGGTAAAATAACTTTAACTGC
TGCGATTACTGTTGTTCTATCTTTAGATGGTAGCTCAAATGCAAAGAAAT
ATGAAGATATCGGTGCAGCACCTGAAGAACGCGCAGCACGTGGAATTACT
ATTAATTGCGAGCGTAGTGAG
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