mRNA_A-nodosum_M_contig12.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12.15.1
Unique NamemRNA_A-nodosum_M_contig12.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Match: D8LI98_ECTSI (Stc1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI98_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 8.600e-27
Identity = 84/169 (49.70%), Postives = 97/169 (57.40%), Query Frame = 1 
Query:    1 MTEDQLKCKDCVSSAAAAERQSAHDARKSTAEG-----EPLLCSVCEQKR-PPEDFTNTQARKPDSSRKCRHCSVAVETAEAEATRAAREARLSEAQGASVTAAKLPKGSLGAAARLKAASAECALEAEKVTGLKPQVGADMKRGRXXXXXXXTWRGRASSGQ--RGRS 483
            + ED++KCK+CV+ AA  ER+ A    K+++ G     EPL CS C+QK  P   FTNTQARKPD+SRKCR                                  LPKG+ GAAARLKAASAECA EAEKVTGLKP VGA  KRG        TWRGRASSG   RGR+
Sbjct:   40 LAEDKVKCKECVAKAATEERERASQNSKASSNGGEGKDEPLSCSACKQKSLPRSSFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAGAAARLKAASAECAREAEKVTGLKPLVGAG-KRGGRGPGRGRTWRGRASSGPATRGRA 207
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BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Match: A0A6H5KHQ9_9PHAE (Stc1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.160e-9
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 MTEDQLKCKDCVSSAAAAERQSAHDARKSTA---EG--EPLLCSVCEQKR-PPEDFTNTQARKPDSSRKCR 195
            + ED++KCK+CV+ AA  ER+ A +  K+++   EG  EPL CSVC+QKR P   FTNTQARKP++SRKCR
Sbjct:   59 LAEDKVKCKECVAKAATEERERASENSKASSNDGEGKDEPLSCSVCKQKRLPRSSFTNTQARKPETSRKCR 129
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BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Match: A0A7S4C1J3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1J3_CHRCT)

HSP 1 Score: 65.1 bits (157), Expect = 1.520e-8
Identity = 51/130 (39.23%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:   16 LKCKDCVSSAAAAERQSA---HDARKSTAEGEPLLCSVCEQKRPPEDFTNTQARKPDSSRKCRHCSVAVETAEAEATRAAREARLSEAQGASVTAAKLPKGSLGAAARLKAASAECALEAEKVTGLKPQV 396
            L+CK CV SAAAAER+ A      R   A+ E   CS C+   P   F  TQ  K    ++C+ C  A E     A    +   LSEA+    TA +  + S   A +L  ++A  ALEAE+VTGLKP V
Sbjct:   67 LRCKQCVESAAAAEREQAAKRQAERAPAADDEKHTCSACKAALPTSAFNRTQLSKGPEKQRCQQCVAASEQESQAAVEERQRKALSEAK----TAMQRAEASGSVAEKLATSAAHAALEAERVTGLKPVV 192
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BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Match: A0A7S0Q163_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q163_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.530e-8
Identity = 62/166 (37.35%), Postives = 83/166 (50.00%), Query Frame = 1 
Query:   16 LKCKDCVSSAAAAERQ---------SAHDARKSTAEGEPLLCSVCEQKRPPEDFTNTQARKPDSSRKCRHCSVAVETAEAEATRAARE---ARLSEAQGASVTAAKLPKGSLGAAARLKAASAECALEAEKVTGLKPQV-GADMKRGRXXXXXXXTWRGRASSGQR 474
            ++CK CV  AAAAER+         +A++A   TA  E   CSVC+   P   F  +Q  K    ++C+ C   V T E EA+ A  E   A L+EA+     A +  + S   A +L  ++   ALEAE+VTGLKP V G    RGR       +WRG  S G R
Sbjct:   40 IRCKTCVEEAAAAEREQAAKRQTQRAANEASADTAADEQHTCSVCQLGLPASAFNRSQLSKGAGKQRCQKC---VATNEQEASAAVEERQKAALAEAK----VAMQRAEASGSVAQKLATSATHAALEAERVTGLKPVVLGRGRSRGRG------SWRGGRSGGGR 192
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BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Match: A0A7S0JH32_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JH32_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 6.760e-6
Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 1 
Query:   16 LKCKDCVSSAAAAER-QSAHDARKSTAEG--------EPLLCSVCEQKRPPEDFTNTQARKPDSSRKCRHCSVAVETAEAEATRAAREARLSEAQGASVTAAKLPKGSLGAAARLKAASAECALEAEKVTGLKPQVGADMKRGRXXXXXXXTWRGRASSGQ 471
            ++CK CV  AA  ER Q+A    +  AEG        +   CS CE   P   F  TQ  K    ++C+ C   V  +E EA+ AA E R   A   +  A +  + S     +L A++   ALEAE+VTGLKP +     RGR       +WRGRA  G+
Sbjct:   40 IRCKSCVEEAAVREREQAAKRQAERIAEGAGGDKFCQDQHTCSACEIVLPASAFNRTQLSKGTEKQRCQQC---VGRSEQEAS-AAVEERQKVALADAKAALRRAEASGSVVEKLTASATHAALEAERVTGLKPVILGRGGRGRGRG----SWRGRAGGGR 192
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BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Match: A0A6U1C738_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C738_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.040e-5
Identity = 62/157 (39.49%), Postives = 81/157 (51.59%), Query Frame = 1 
Query:   16 LKCKDCVSSAAAAERQSAH---DARKSTAEGEPLLCSVCEQKRPPEDFTNTQARKPDSSRKCRHCSVAVETAEAEATRAAREARLSEAQGASVTAAKLPKGSLGAAARLKAASAECALEAEKVTGLKPQVGADMKRGRXXXXXXXTWRGRASSGQRG 477
            L CK CV +  A+ER +A     A  +  E E   C+ C+++ P   F   Q RK    ++   C   VE AEA A+ AA +A+  +  G    A K  +    A  +  AA+AECA EAE VTGLKP V   + RGRXXXXX      R SSG+ G
Sbjct:   41 LTCKRCVEADQASERAAAAAQTHAMPAAGEDELHECAACKERLPALRFNKNQLRKKGPGKQ--RCQACVEAAEASASSAAGDAKREKLAGLRQDA-KRAEAVGSAVDKAVAAAAECAAEAELVTGLKPMV---LGRGRXXXXX------RGSSGRGG 185
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LI98_ECTSI8.600e-2749.70Stc1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHQ9_9PHAE2.160e-956.34Stc1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S4C1J3_CHRCT1.520e-839.23Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0Q163_9EUKA1.530e-837.35Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0JH32_9EUKA6.760e-635.40Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6U1C738_9STRA6.040e-539.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12contigA-nodosum_M_contig12:124707..126311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI98
PFAMsStc1
Model size1220
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.53e-29
EggNOG OGs2CIRJ@1|root,2S951@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003700.2
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866617.373335-CDS-A-nodosum_M_contig12:124706..1247711680866617.373335-CDS-A-nodosum_M_contig12:124706..124771Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 124707..124771 +
1680866617.3837361-CDS-A-nodosum_M_contig12:125156..1255861680866617.3837361-CDS-A-nodosum_M_contig12:125156..125586Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 125157..125586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866617.3920057-UTR-A-nodosum_M_contig12:125586..1263111680866617.3920057-UTR-A-nodosum_M_contig12:125586..126311Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12 125587..126311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12.15.1prot_A-nodosum_M_contig12.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12 124707..125586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12.15.1

>prot_A-nodosum_M_contig12.15.1 ID=prot_A-nodosum_M_contig12.15.1|Name=mRNA_A-nodosum_M_contig12.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
MTEDQLKCKDCVSSAAAAERQSAHDARKSTAEGEPLLCSVCEQKRPPEDF
TNTQARKPDSSRKCRHCSVAVETAEAEATRAAREARLSEAQGASVTAAKL
PKGSLGAAARLKAASAECALEAEKVTGLKPQVGADMKRGRGRGRGRGTWR
GRASSGQRGRSSNT*
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mRNA from alignment at A-nodosum_M_contig12:124707..126311+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12.15.1 ID=mRNA_A-nodosum_M_contig12.15.1|Name=mRNA_A-nodosum_M_contig12.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1605bp|location=Sequence derived from alignment at A-nodosum_M_contig12:124707..126311+ (Ascophyllum nodosum dioecious)
ATGACGGAGGACCAGCTCAAGTGTAAAGACTGCGTCTCCTCAGCCGCGGC
AGCGGAACGGCAAAGGTTAGTTATTAATAGTCATTTAATACTGTACCAGG
TAGTCATTTCATGCGTGCGGCACGTCTCACCATTTAGTAAAGGACAGACA
AGTCTCTGGGGGCATCGCGTTTAAGGAATGATGACGTGCAAGCGGTGCGT
TTCTCTCTTGTCCCCAAGTGTTTTCAAGAAAAATCTGGACGCAGTTAGAC
CTTCTGAGCATCCCCCATTGGCGGGGGCTCGGTATCTTCATCAAGACAGA
GAAAACACGTTACGTTGGAGTGCATGTCTCGCCTTCGATACAAAGTTACA
AACCTTACAGGCTATGTTCGTCTTTCATGCAAAGACAGGATCACTGACCC
CGTCATATAATTACATGGTTTTCGTGCCCCGTAATGTAATCCTCGTCCAG
CGCCCACGACGCGCGCAAGAGCACGGCAGAGGGCGAGCCGCTTCTGTGCA
GCGTCTGTGAACAGAAGCGCCCCCCAGAAGATTTCACCAACACCCAGGCC
CGTAAGCCTGACTCCTCGCGAAAGTGTCGACACTGTTCGGTCGCAGTTGA
GACAGCAGAAGCTGAGGCAACTCGCGCGGCTAGAGAGGCAAGGCTGAGCG
AGGCACAGGGAGCTTCGGTTACTGCGGCGAAACTACCCAAAGGGTCTCTC
GGCGCGGCGGCGCGCTTGAAGGCCGCAAGCGCTGAGTGTGCCCTCGAAGC
AGAAAAGGTTACGGGCTTGAAGCCGCAGGTTGGGGCTGATATGAAGAGGG
GGAGGGGGAGAGGAAGAGGAAGGGGTACGTGGCGAGGTCGAGCAAGTTCT
GGGCAGCGCGGAAGATCTAGCAACACTTGAGAGTAGAACTACTATGTGTT
TGCATTCGTACTCTATACCGGAGGGAAGTTGTCAAGCAACACTCAACACC
ATATTGGTGGAAAACGGGGACGGGAATGTAGCTGATCATTGCTCGATCAT
TTTGGAAAGTTGGAGCGTGTGCAGTGACGTGATCGAGAGACCTTACTCAT
AGAACCACGCCGATATCTTGGGAAGTTTCATCGGGCCATTCTACTATCTG
TAGTTGCAGCAATGAGGTCTGGGTCAAATGCTTTAGATTCCGGCCTGAAA
ACTTCAGGCTATACTATACTGTTAATGATTTTCAGAGAAATTTTTAAAAG
CCTTCGTAATTTTCCATCATTCTAGAAAGAGTTTTCACTTGAGCGTTTGC
TATGCGAAATCGGGTCAGTATTTCTAGAAATATTACTACAGTACAGTACA
GTACTATTACTTGCAGCGGGCGGTTTGGCGATTGATTTATTTTCACACTC
TGTTTCCCTCAATAATATGGCGACACTTAGGTTTGCGGATGATGCGCCGT
AGAATCACGACCGCCTTCCTAGAAAGAATTTCCCGTTACGTGGTCCATGG
AAAACCTACCTGAAGACTTCTCACACATTGGATATAGGCTCTAGTAGTTC
AACTCCATATTGTATAAACTGTAAAAGCAATCCGCAACCTTGTTACAAGT
ACCCTGCTGCAGGAGAGGCAAGAGTCACGGACTATGTTACATAGATAGAG
GAGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12:124707..126311+

>mRNA_A-nodosum_M_contig12.15.1 ID=mRNA_A-nodosum_M_contig12.15.1|Name=mRNA_A-nodosum_M_contig12.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig12:124707..126311+ (Ascophyllum nodosum dioecious)
ATGACGGAGGACCAGCTCAAGTGTAAAGACTGCGTCTCCTCAGCCGCGGC
AGCGGAACGGCAAAGCGCCCACGACGCGCGCAAGAGCACGGCAGAGGGCG
AGCCGCTTCTGTGCAGCGTCTGTGAACAGAAGCGCCCCCCAGAAGATTTC
ACCAACACCCAGGCCCGTAAGCCTGACTCCTCGCGAAAGTGTCGACACTG
TTCGGTCGCAGTTGAGACAGCAGAAGCTGAGGCAACTCGCGCGGCTAGAG
AGGCAAGGCTGAGCGAGGCACAGGGAGCTTCGGTTACTGCGGCGAAACTA
CCCAAAGGGTCTCTCGGCGCGGCGGCGCGCTTGAAGGCCGCAAGCGCTGA
GTGTGCCCTCGAAGCAGAAAAGGTTACGGGCTTGAAGCCGCAGGTTGGGG
CTGATATGAAGAGGGGGAGGGGGAGAGGAAGAGGAAGGGGTACGTGGCGA
GGTCGAGCAAGTTCTGGGCAGCGCGGAAGATCTAGCAACACTTGA
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