mRNA_A-nodosum_M_contig1195.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1195.10.1
Unique NamemRNA_A-nodosum_M_contig1195.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 7.220e-33
Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 3
Query:   48 QIPAMALNKDG-GSIIVNSSVMSQR--AQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLKA 437
            QIPAM     G GSIIVN+SV   R  A    + AG+Y+ASKA  +ML++Y AIEGA  G+RVN+V PG+V+TP++G MP +TL  F    QL  R   P+EIA+ V++LAS+D+TMVTGS + MDG W +KA
Sbjct:  126 QIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.240e-30
Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = 3
Query:   51 IPAMALNKDGGSIIVNSSVMSQRAQT--AFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG-GMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLKA 437
            +PA+  +  GGS+I+NSS M+ RA    AF+  G+Y+ASKA  DM+++Y AIE ++H  RVN++ PGIV T + G GM  E+   F   + L GR  TP+EIA  V +LASD++T +TGS+H +DG WGLKA
Sbjct:  128 LPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLKA 259          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.520e-30
Identity = 68/133 (51.13%), Postives = 89/133 (66.92%), Query Frame = 3
Query:   48 QIPAMALNKDG-GSIIVNSSVMSQR--AQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLKA 437
            QIPAM     G GSIIVN+S  + R  A    +  G+Y+ASKA  +ML++Y AIEGA  G+RVN+V+PG V+TP++G MP ETL       QL  R   P+EIA  V++LAS+D+ MVTGS + MDG W +KA
Sbjct:  124 QIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: UPI001994D12B (SDR family oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI001994D12B)

HSP 1 Score: 99.4 bits (246), Expect = 6.620e-23
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 3
Query:   57 AMALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG--GMPPETLQGFCKDLQ---LFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
            A  LN+ GG+I+VN+S+ +Q        + +YAASKA    LVR  A+E A  GIRVNAV+PG ++TPL+G  G+ PE LQGF KDL      GR   P+E+ R+  +L SDDS+ +TG   V+DG
Sbjct:   13 APLLNR-GGAIVVNTSINNQLGMPG---SAMYAASKAAARSLVRVAAVELASQGIRVNAVSPGPIETPLYGKLGLAPEVLQGFAKDLSGKIALGRFGRPEEVGRAARFLISDDSSFMTGEEIVLDG 134          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A835ZCX6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.220e-22
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAG--VYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPP----ETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
            +PA+  +   GSI+VNSSV           AG  VY+ASKA VDMLV+Y A+E A H  RVN++ PG V TP   G+ P      +    K +QL  RA +P+E+A+ V +LASD+++ VTGS+H++DG
Sbjct:  129 LPAIEKSGGQGSIVVNSSVAGSAVCALPRAAGAAVYSASKAAVDMLVKYAAVEAAPHNTRVNSIAPGTVRTPFLQGVHPGLQDSDIDRGAKGIQLIQRAASPEEVAKFVCFLASDEASFVTGSVHLVDG 257          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.410e-22
Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 3
Query:   51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAGV--YAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTP---LWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
            +PA+  +   GSI+VNSS     A      AG+  YAASKA VDMLV+Y A+E A H  RV +V PG V TP   L+G M    +    K +QL  RA  P+E+AR V +L SDD++ VTGS+H +DG
Sbjct:  133 LPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDG 260          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A836CPZ3_9STRA (Short-chain dehydrogenase/reductase SDR n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPZ3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.480e-22
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAG--VYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG----GMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
            +PA+  +   GSI+VNSSV    A  +   +G   YAASKA VDMLV+Y A+E A H  R+N++ PG V TP++     G+    +    K +QL  RA +P+E+AR   +L SDD++ VTGS+H++DG
Sbjct:  112 LPAIEKSGGQGSIVVNSSVAGSVASASPLASGNNAYAASKAAVDMLVKYAAVEAALHNTRINSIAPGTVRTPIFQVFAPGIQDNDIDELAKGIQLMQRAASPEEVARFTCFLLSDDASFVTGSVHLVDG 240          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A6V8KTY4_9ACTN (Uncharacterized protein n=1 Tax=Phytohabitans houttuyneae TaxID=1076126 RepID=A0A6V8KTY4_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 1.180e-21
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG---GMPPETLQGFCKDLQ-LFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLK 434
            +PA+A    GGS++V  S ++      F TA  YA SK+ V+ LVR  A EGA HG+RVNAV PG+VDTP+ G   G PP  L+    +L  L GRA TPDE+A +V++L   DS  VTG++  +DG W L+
Sbjct:  101 LPALA-RTGGGSVVVVGSALAHTLDDDFLTAA-YAVSKSGVETLVRLAAYEGARHGVRVNAVAPGLVDTPMAGRALGDPP--LRARLPELMPLGGRACTPDEVAAAVVWLLGPDSARVTGAVVPVDGGWTLR 228          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: Q5NW77_AROAE (Short-chain alcohol dehydrogenase n=1 Tax=Aromatoleum aromaticum (strain EbN1) TaxID=76114 RepID=Q5NW77_AROAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.010e-20
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   72 KDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWG 428
            K+GG  IVN  V S  A    +    Y+ASK  V  L RY A+E A+  I+VNAV+PGI+ TP+ G   PE  + F  D    GR   P+EIA  VL+LASD++  +TG  H++DG WG
Sbjct:  130 KNGGGKIVN--VASLAAHVGLTNLAAYSASKGAVVALTRYAAMEYAKDNIQVNAVSPGIIQTPILGDTTPEMTKLFSADTPA-GRLGRPEEIANMVLFLASDEADFITGITHIVDGGWG 245          
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A1G9X955_9ACTN (3alpha(Or 20beta)-hydroxysteroid dehydrogenase n=1 Tax=Streptomyces wuyuanensis TaxID=1196353 RepID=A0A1G9X955_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 1.450e-19
Identity = 61/130 (46.92%), Postives = 74/130 (56.92%), Query Frame = 3
Query:   42 APQIPAMALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG--GMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRW 425
            AP+I A      GG  IVN++  S  A T  S  G YAA+K  V  L R  AIE A  GIRVNAV PG VDTP+    G  P+ L G  + L   GR   P+E+AR  L+L SDDS+ +TG   V+DG W
Sbjct:  121 APEIEAA-----GGGTIVNTA--SYTALTGMSYVGAYAATKHAVLGLTRVAAIELAAKGIRVNAVCPGAVDTPMSNPDGADPDALDGLYRQLVPLGRVGRPEEVARLALFLTSDDSSYITGQPFVIDGGW 243          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQS1_ECTSI7.220e-3353.38Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A835ZCI5_9STRA1.240e-3049.24Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
D8LQS3_ECTSI4.520e-3051.13Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
UPI001994D12B6.620e-2347.62SDR family oxidoreductase n=1 Tax=Deltaproteobacte... [more]
A0A835ZCX6_9STRA3.220e-2244.96Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZEC4_9STRA3.410e-2246.88Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836CPZ3_9STRA4.480e-2243.41Short-chain dehydrogenase/reductase SDR n=2 Tax=Tr... [more]
A0A6V8KTY4_9ACTN1.180e-2146.97Uncharacterized protein n=1 Tax=Phytohabitans hout... [more]
Q5NW77_AROAE5.010e-2045.38Short-chain alcohol dehydrogenase n=1 Tax=Aromatol... [more]
A0A1G9X955_9ACTN1.450e-1946.923alpha(Or 20beta)-hydroxysteroid dehydrogenase n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1195contigA-nodosum_M_contig1195:210067..211516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQS1
PFAMsadh_short_C2
Model size675
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.67e-33
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Descriptionoxidation-reduction process
Cds size381
COG categoryIQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866613.3343558-UTR-A-nodosum_M_contig1195:210066..2103011680866613.3343558-UTR-A-nodosum_M_contig1195:210066..210301Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1195 210067..210301 -
1680866613.4458578-UTR-A-nodosum_M_contig1195:211457..2115161680866613.4458578-UTR-A-nodosum_M_contig1195:211457..211516Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1195 211458..211516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866613.4137945-CDS-A-nodosum_M_contig1195:210301..2103971680866613.4137945-CDS-A-nodosum_M_contig1195:210301..210397Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1195 210302..210397 -
1680866613.4281163-CDS-A-nodosum_M_contig1195:210922..2110631680866613.4281163-CDS-A-nodosum_M_contig1195:210922..211063Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1195 210923..211063 -
1680866613.4374273-CDS-A-nodosum_M_contig1195:211313..2114571680866613.4374273-CDS-A-nodosum_M_contig1195:211313..211457Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1195 211314..211457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1195.10.1prot_A-nodosum_M_contig1195.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1195 210302..211457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1195.10.1

>prot_A-nodosum_M_contig1195.10.1 ID=prot_A-nodosum_M_contig1195.10.1|Name=mRNA_A-nodosum_M_contig1195.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
MALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGA
EHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSV
LYLASDDSTMVTGSMHVMDGRWGLKA*
back to top

mRNA from alignment at A-nodosum_M_contig1195:210067..211516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1195.10.1 ID=mRNA_A-nodosum_M_contig1195.10.1|Name=mRNA_A-nodosum_M_contig1195.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1450bp|location=Sequence derived from alignment at A-nodosum_M_contig1195:210067..211516- (Ascophyllum nodosum dioecious)
CCGCACGCTTCCTACCTCTACGTTGCCTTCTCTTTGTTCCGGCGCCTCAG ATCCCAGCGATGGCGCTTAATAAGGATGGGGGCTCGATCATTGTTAACTC TTCTGTAATGTCGCAGAGAGCTCAGACAGCCTTCAGCACTGCCGGCGTCT ACGCAGCATCAAAGGCAAACGTCGACATGCTTGTCCGCTACGGGGCCATA GAGGTGAGTCCGCTAATAATTTTGGTTAAAAACGGGTGACGAGGGGATAT TTACTCCACTGCAAAAAGTGGGAGTGTATGGCGAAGCTTGTCCCCCAGCT CCAGTGAACTTGGCCCCGCCAGAAACCTCTCAACTAAGCAGTCATTTTTA GACCCCTTGCTCGGTGCATCTTCCGTCATCTCCGCATGGTCGTTTATGAC ATCCGTTCTCTATCTATATTTATGTCTCGCTTTGTGATTATGTGTGTGGC CAGGGGGCGGAGCACGGCATTCGTGTCAATGCGGTGAATCCAGGAATAGT CGACACGCCACTTTGGGGCGGTATGCCGCCGGAAACTCTCCAGGGTTTCT GCAAGGATCTCCAGCTCTTCGGTCGTGCAACGACGCCCGACGAGGTACAA TGTTTCAAGCGCAGGTTTCAGCAGAACCATTTAGTCCATTACACCAGTCC GTCTTTTCAAAAAGTTATTCGTTGGGTCGGCCCCAACGCTGCATCAGTAG GGTTTCCCTTGATTTGTAGGGACCCTGGATACTCTTGGATGGCGTTTAGG TGGCGGAATGGCAGAAGGAAACTCTGGCACTCCGGTTTGAGTAGAAAAGA GAAAACTATGCGGAAGAATAAACGTTGGACAGAGAACAATGCTGACCAAA AACGATACCGGCCAAGGGAAAGTTCCCCGCCACTAACTTTGCAGTAGCCA ACCCATTTGCCACTATGCTTTTCGTTGCTCTCTCGAACAGCCGCCGCGTC GCCCCAGGAAGCATAATAAGTACGTGTAATTGTACGCCTCAGAAAATGGA AATTCTCCGTCAATGAGGAGGCCCGATAATACCGATCCATCCGTTCGACC TCTCTACGGGAATTTGCCAACCCCGCTTCCCTCCCCATGACCCATGTTTT TTTTAACCCACGCATCCAGATTGCCCGCTCTGTATTGTACCTGGCATCTG ACGACTCTACTATGGTTACGGGATCAATGCACGTCATGGACGGCAGGTGG GGGCTCAAGGCCTGAGTTTCCGACGCTTGGTGGCTAGACCTGATAAGATA AATGGGGGTGAATGAACAGGGTTTAGCTTGGAGATGAGCAGTGAATAGGG ATCATGTACAGCATTTAATGAAGCATGATAGTTCGTGGGTCTAAGGGTAG AGAAGCCAAATGTAGTGTAGCCACGATGATACCAGGTATCACGAAAGCTC AAAGCCACTGCTGCTGCTGCAACTTCCAATCGGGAAAGATTTCGAAGAAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1195:210067..211516-

>mRNA_A-nodosum_M_contig1195.10.1 ID=mRNA_A-nodosum_M_contig1195.10.1|Name=mRNA_A-nodosum_M_contig1195.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig1195:210067..211516- (Ascophyllum nodosum dioecious)
ATGGCGCTTAATAAGGATGGGGGCTCGATCATTGTTAACTCTTCTGTAAT
GTCGCAGAGAGCTCAGACAGCCTTCAGCACTGCCGGCGTCTACGCAGCAT
CAAAGGCAAACGTCGACATGCTTGTCCGCTACGGGGCCATAGAGGGGGCG
GAGCACGGCATTCGTGTCAATGCGGTGAATCCAGGAATAGTCGACACGCC
ACTTTGGGGCGGTATGCCGCCGGAAACTCTCCAGGGTTTCTGCAAGGATC
TCCAGCTCTTCGGTCGTGCAACGACGCCCGACGAGATTGCCCGCTCTGTA
TTGTACCTGGCATCTGACGACTCTACTATGGTTACGGGATCAATGCACGT
CATGGACGGCAGGTGGGGGCTCAAGGCCTGA
back to top