mRNA_A-nodosum_M_contig1195.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 128 bits (322), Expect = 7.220e-33 Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 3
Query: 48 QIPAMALNKDG-GSIIVNSSVMSQR--AQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLKA 437
QIPAM G GSIIVN+SV R A + AG+Y+ASKA +ML++Y AIEGA G+RVN+V PG+V+TP++G MP +TL F QL R P+EIA+ V++LAS+D+TMVTGS + MDG W +KA
Sbjct: 126 QIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.240e-30 Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = 3
Query: 51 IPAMALNKDGGSIIVNSSVMSQRAQT--AFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG-GMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLKA 437
+PA+ + GGS+I+NSS M+ RA AF+ G+Y+ASKA DM+++Y AIE ++H RVN++ PGIV T + G GM E+ F + L GR TP+EIA V +LASD++T +TGS+H +DG WGLKA
Sbjct: 128 LPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLKA 259
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 121 bits (303), Expect = 4.520e-30 Identity = 68/133 (51.13%), Postives = 89/133 (66.92%), Query Frame = 3
Query: 48 QIPAMALNKDG-GSIIVNSSVMSQR--AQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLKA 437
QIPAM G GSIIVN+S + R A + G+Y+ASKA +ML++Y AIEGA G+RVN+V+PG V+TP++G MP ETL QL R P+EIA V++LAS+D+ MVTGS + MDG W +KA
Sbjct: 124 QIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: UPI001994D12B (SDR family oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI001994D12B) HSP 1 Score: 99.4 bits (246), Expect = 6.620e-23 Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 3
Query: 57 AMALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG--GMPPETLQGFCKDLQ---LFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
A LN+ GG+I+VN+S+ +Q + +YAASKA LVR A+E A GIRVNAV+PG ++TPL+G G+ PE LQGF KDL GR P+E+ R+ +L SDDS+ +TG V+DG
Sbjct: 13 APLLNR-GGAIVVNTSINNQLGMPG---SAMYAASKAAARSLVRVAAVELASQGIRVNAVSPGPIETPLYGKLGLAPEVLQGFAKDLSGKIALGRFGRPEEVGRAARFLISDDSSFMTGEEIVLDG 134
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A835ZCX6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX6_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.220e-22 Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 3
Query: 51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAG--VYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPP----ETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
+PA+ + GSI+VNSSV AG VY+ASKA VDMLV+Y A+E A H RVN++ PG V TP G+ P + K +QL RA +P+E+A+ V +LASD+++ VTGS+H++DG
Sbjct: 129 LPAIEKSGGQGSIVVNSSVAGSAVCALPRAAGAAVYSASKAAVDMLVKYAAVEAAPHNTRVNSIAPGTVRTPFLQGVHPGLQDSDIDRGAKGIQLIQRAASPEEVAKFVCFLASDEASFVTGSVHLVDG 257
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.410e-22 Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 3
Query: 51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAGV--YAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTP---LWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
+PA+ + GSI+VNSS A AG+ YAASKA VDMLV+Y A+E A H RV +V PG V TP L+G M + K +QL RA P+E+AR V +L SDD++ VTGS+H +DG
Sbjct: 133 LPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDG 260
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A836CPZ3_9STRA (Short-chain dehydrogenase/reductase SDR n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPZ3_9STRA) HSP 1 Score: 100 bits (248), Expect = 4.480e-22 Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 3
Query: 51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAG--VYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG----GMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDG 419
+PA+ + GSI+VNSSV A + +G YAASKA VDMLV+Y A+E A H R+N++ PG V TP++ G+ + K +QL RA +P+E+AR +L SDD++ VTGS+H++DG
Sbjct: 112 LPAIEKSGGQGSIVVNSSVAGSVASASPLASGNNAYAASKAAVDMLVKYAAVEAALHNTRINSIAPGTVRTPIFQVFAPGIQDNDIDELAKGIQLMQRAASPEEVARFTCFLLSDDASFVTGSVHLVDG 240
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A6V8KTY4_9ACTN (Uncharacterized protein n=1 Tax=Phytohabitans houttuyneae TaxID=1076126 RepID=A0A6V8KTY4_9ACTN) HSP 1 Score: 98.6 bits (244), Expect = 1.180e-21 Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 3
Query: 51 IPAMALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG---GMPPETLQGFCKDLQ-LFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWGLK 434
+PA+A GGS++V S ++ F TA YA SK+ V+ LVR A EGA HG+RVNAV PG+VDTP+ G G PP L+ +L L GRA TPDE+A +V++L DS VTG++ +DG W L+
Sbjct: 101 LPALA-RTGGGSVVVVGSALAHTLDDDFLTAA-YAVSKSGVETLVRLAAYEGARHGVRVNAVAPGLVDTPMAGRALGDPP--LRARLPELMPLGGRACTPDEVAAAVVWLLGPDSARVTGAVVPVDGGWTLR 228
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: Q5NW77_AROAE (Short-chain alcohol dehydrogenase n=1 Tax=Aromatoleum aromaticum (strain EbN1) TaxID=76114 RepID=Q5NW77_AROAE) HSP 1 Score: 94.7 bits (234), Expect = 5.010e-20 Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 3
Query: 72 KDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWGGMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRWG 428
K+GG IVN V S A + Y+ASK V L RY A+E A+ I+VNAV+PGI+ TP+ G PE + F D GR P+EIA VL+LASD++ +TG H++DG WG
Sbjct: 130 KNGGGKIVN--VASLAAHVGLTNLAAYSASKGAVVALTRYAAMEYAKDNIQVNAVSPGIIQTPILGDTTPEMTKLFSADTPA-GRLGRPEEIANMVLFLASDEADFITGITHIVDGGWG 245
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Match: A0A1G9X955_9ACTN (3alpha(Or 20beta)-hydroxysteroid dehydrogenase n=1 Tax=Streptomyces wuyuanensis TaxID=1196353 RepID=A0A1G9X955_9ACTN) HSP 1 Score: 93.6 bits (231), Expect = 1.450e-19 Identity = 61/130 (46.92%), Postives = 74/130 (56.92%), Query Frame = 3
Query: 42 APQIPAMALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAEHGIRVNAVNPGIVDTPLWG--GMPPETLQGFCKDLQLFGRATTPDEIARSVLYLASDDSTMVTGSMHVMDGRW 425
AP+I A GG IVN++ S A T S G YAA+K V L R AIE A GIRVNAV PG VDTP+ G P+ L G + L GR P+E+AR L+L SDDS+ +TG V+DG W
Sbjct: 121 APEIEAA-----GGGTIVNTA--SYTALTGMSYVGAYAATKHAVLGLTRVAAIELAAKGIRVNAVCPGAVDTPMSNPDGADPDALDGLYRQLVPLGRVGRPEEVARLALFLTSDDSSYITGQPFVIDGGW 243 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1195.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1195.10.1 >prot_A-nodosum_M_contig1195.10.1 ID=prot_A-nodosum_M_contig1195.10.1|Name=mRNA_A-nodosum_M_contig1195.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp MALNKDGGSIIVNSSVMSQRAQTAFSTAGVYAASKANVDMLVRYGAIEGAback to top mRNA from alignment at A-nodosum_M_contig1195:210067..211516- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1195.10.1 ID=mRNA_A-nodosum_M_contig1195.10.1|Name=mRNA_A-nodosum_M_contig1195.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1450bp|location=Sequence derived from alignment at A-nodosum_M_contig1195:210067..211516- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1195:210067..211516- >mRNA_A-nodosum_M_contig1195.10.1 ID=mRNA_A-nodosum_M_contig1195.10.1|Name=mRNA_A-nodosum_M_contig1195.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig1195:210067..211516- (Ascophyllum nodosum dioecious)back to top |