mRNA_A-nodosum_M_contig11912.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11912.1.1
Unique NamemRNA_A-nodosum_M_contig11912.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.050e-19
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR GQ ++   GYV+  SG   G  + K+G  GVG+A++++I  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:   34 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAI 157
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.080e-19
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:   28 EVLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            +V+ +    GCD+IGLQETRR GQ ++   GYV+  SG   G  + K+G+ GVG+A+++++      E R  E IS RL+KV L++ GR   VTFVVGYA  +T+ +        K++FWTAL+ A+
Sbjct:  179 KVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAI 303
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.990e-19
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSI---SRAEARPPEFISDRLLKVTLELCGRARAVTFVVGYAQQTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR GQ ++   GYVV  SG   G  + K+G  GVG+A+++++   +  E R  E IS RL+KV L++ GR   VTFVVGYA +T+          K++ WTAL+ A+
Sbjct:  148 VMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKD-KRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAI 270
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.380e-19
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR GQ ++   GYV+  SG   G  + K+G  GVG+A+++++  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAI 126
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5KAA3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.820e-19
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYA-QQTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR+GQ ++   GYV+  SG   G  + K+G  GVG+A+++++  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:    3 VMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPSETVRTTAGGDVNAKDSFWTALDAAI 126
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.710e-19
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR+GQ ++   GYV+  SG   G  + K+G  GVG+A+++++  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:  111 VMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAI 234
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5KEC1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.060e-19
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNLFR-----KKNTFWTALERAV 381
            V+ ++   GCD+IGLQETRR GQ ++   GYV+  SG   G  + K+G  GVG+A+++++  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:    3 VMQIFSATGCDMIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESGGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGGVDAKDSFWTALDAAI 126
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.520e-19
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR GQ ++   GYV   SG   G  +GK G  GVG+A+++++ ++   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVFIWSGARAGT-KGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAI 126
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.450e-19
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            V+ +    GCD+IGLQETRR GQ ++   GYV+  SG   G  + K+G  GVG+A+++++  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAI 126
[Close]
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.290e-18
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   31 VLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESGGDGEGKKGQGGVGLAVRKSISRA---EARPPEFISDRLLKVTLELCGRARAVTFVVGYAQ-QTLNL-----FRKKNTFWTALERAV 381
            ++ +    GCD+IGLQETRR GQ ++   GYV+  SG   G  + K+G  GVG+A+++++  +   E R  E IS RL+KV L++ GR   VTFVVGYA  +T+          K++FWTAL+ A+
Sbjct:   84 IMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAI 207
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11912.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE1.050e-1943.65Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JVN7_9PHAE1.080e-1942.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDU4_9PHAE1.990e-1943.20Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBZ6_9PHAE3.380e-1942.86Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KAA3_9PHAE4.820e-1942.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JMB4_9PHAE6.710e-1942.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEC1_9PHAE7.060e-1942.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ63_9PHAE7.520e-1943.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE9.450e-1942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.290e-1842.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11912contigA-nodosum_M_contig11912:9067..9447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6412.HelroP159228
PFAMsExo_endo_phos,Exo_endo_phos_2
Model size381
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.37e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39VM0@33154|Opisthokonta,3BPUP@33208|Metazoa,3D6HY@33213|Bilateria
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size381
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866609.5110807-CDS-A-nodosum_M_contig11912:9066..94471680866609.5110807-CDS-A-nodosum_M_contig11912:9066..9447Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11912 9067..9447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11912.1.1prot_A-nodosum_M_contig11912.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11912 9067..9447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11912.1.1

>prot_A-nodosum_M_contig11912.1.1 ID=prot_A-nodosum_M_contig11912.1.1|Name=mRNA_A-nodosum_M_contig11912.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
MEARRGRAAEVLDVYQEMGCDIIGLQETRRSGQSALLQAGYVVYCSGESG
GDGEGKKGQGGVGLAVRKSISRAEARPPEFISDRLLKVTLELCGRARAVT
FVVGYAQQTLNLFRKKNTFWTALERAV
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mRNA from alignment at A-nodosum_M_contig11912:9067..9447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11912.1.1 ID=mRNA_A-nodosum_M_contig11912.1.1|Name=mRNA_A-nodosum_M_contig11912.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig11912:9067..9447- (Ascophyllum nodosum dioecious)
ATGGAAGCACGGCGTGGAAGAGCGGCGGAGGTCCTCGACGTGTACCAAGA
GATGGGCTGTGACATCATCGGTCTGCAGGAAACAAGGCGTAGTGGCCAGT
CTGCTCTTCTCCAAGCTGGATATGTTGTCTACTGCAGCGGCGAGTCCGGA
GGCGACGGGGAAGGGAAGAAGGGCCAAGGTGGAGTTGGGCTTGCCGTTCG
CAAGAGCATCTCCCGTGCCGAAGCACGGCCGCCGGAGTTCATCAGCGACA
GGTTACTAAAGGTGACGCTCGAACTGTGCGGTCGAGCCCGAGCTGTGACG
TTCGTTGTGGGATACGCTCAACAGACCCTCAACCTCTTTCGGAAAAAGAA
CACTTTTTGGACAGCCCTGGAAAGGGCCGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11912:9067..9447-

>mRNA_A-nodosum_M_contig11912.1.1 ID=mRNA_A-nodosum_M_contig11912.1.1|Name=mRNA_A-nodosum_M_contig11912.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig11912:9067..9447- (Ascophyllum nodosum dioecious)
ATGGAAGCACGGCGTGGAAGAGCGGCGGAGGTCCTCGACGTGTACCAAGA
GATGGGCTGTGACATCATCGGTCTGCAGGAAACAAGGCGTAGTGGCCAGT
CTGCTCTTCTCCAAGCTGGATATGTTGTCTACTGCAGCGGCGAGTCCGGA
GGCGACGGGGAAGGGAAGAAGGGCCAAGGTGGAGTTGGGCTTGCCGTTCG
CAAGAGCATCTCCCGTGCCGAAGCACGGCCGCCGGAGTTCATCAGCGACA
GGTTACTAAAGGTGACGCTCGAACTGTGCGGTCGAGCCCGAGCTGTGACG
TTCGTTGTGGGATACGCTCAACAGACCCTCAACCTCTTTCGGAAAAAGAA
CACTTTTTGGACAGCCCTGGAAAGGGCCGTA
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