mRNA_A-nodosum_M_contig1190.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1190.20.1
Unique NamemRNA_A-nodosum_M_contig1190.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1190.20.1 vs. uniprot
Match: A0A6H5LJ65_9PHAE (DUF202 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ65_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.240e-51
Identity = 141/379 (37.20%), Postives = 177/379 (46.70%), Query Frame = 1 
Query:  109 MARRSVTIVASDGRREGVSWYEGATEAAVLRCVRLALGLEVKGTAHLLWKSGDIVDFDKPITDGVTLYLDTAVAPYDDYYSYGGVGTAGXXXXXXXXXXXXXXXXTSISGGSHSVGGLAHRRSSARVKIHPEYSAGGYGTED-------VGDQRAWGSVSDLRTGLPPPTVARGGLIQRLLRLWCSDDSSDAERXXXXXXXXXXXXXXXPSQQLHHEENAYNAIVRGSVAGDKRRYLLGAKVSVSEDEKCDPEQQRRGILKLKRILAHLANERTLLAWVRVMAKLFSAGSLSMTLAA-ATEGANTVILVVLGVMYFVLCPYVVFIGSSRFHQVKAVMQGTVHETYSHFAGKDLQGVNMLMSLMAALTMGVMIVQLLSNI 1221
            MARRSVTIVASDGRREG+SWY+GATEAAVLRC  LALGL +K  AHLL +SGDIVD   PITDG TL+LDT                                     +G  ++ GG  H  SS                         +   R  GSVS   +G        GG  ++    +     SD E                 S  L                                      EQQR  ILKLKRI AHLANERTLLAWVR + K+F+AG L ++LA        TV  V  G++YF + PYVVF+G+ RFHQ   VM G+V++TYS F+G  L+G+  LM  +A +T+ +M  QL +++
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLRQSGDIVDLGTPITDGATLHLDTV--------------------------RELALPSQEAAGDVYASGGHDHGESSXXXXXXXXXXXXXXXXXXXXXXXXXLATTRCGGSVSVTVSG-------GGGDCRQRPSTFLERGDSDEE---LERRPLLRTGRVPSSTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQRLAILKLKRINAHLANERTLLAWVRAVGKMFTAGVLCLSLAGDGYSPTYTVCFVGTGIVYFAMGPYVVFVGAKRFHQAAQVMNGSVYDTYSFFSGSHLRGLTYLMMTLAVVTVALMATQLSADL 343
[Close]
BLAST of mRNA_A-nodosum_M_contig1190.20.1 vs. uniprot
Match: D8LKT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.120e-28
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:  109 MARRSVTIVASDGRREGVSWYEGATEAAVLRCVRLALGLEVKGTAHLLWKSGDIVDFDKPITDGVTLYLDT 321
            MARRSVTIVASDGRREG+SWY+GATEAAVLRC  LALGL +K  AHLLW+SGDIVD   PITDG TL+LDT
Sbjct:    1 MARRSVTIVASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQSGDIVDLGTPITDGATLHLDT 71
[Close]
BLAST of mRNA_A-nodosum_M_contig1190.20.1 vs. uniprot
Match: D8LKT6_ECTSI (DUF202 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.610e-28
Identity = 68/131 (51.91%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:  841 PEQQRRGILKLKRILAHLANERTLLAWVRVMAKLFSAGSLSMTLAAATEGANT---VILVVLGVMYFVLCPYVVFIGSSRFHQVKAVMQGTVHETYSHFAGKDLQGVNMLMSLMAALTMGVMIVQLLSNIY 1224
            PEQQR  ILKLKRI AHLANERTLLAWVR + K+F+AG L ++L  A +G +    V  V +G++YF + PYVVF+G+ RFHQ   VM+G+VH+TYS F+G   +G+  LM  +A +T+ +M  QL +++Y
Sbjct:   70 PEQQRLAILKLKRINAHLANERTLLAWVRAVGKMFTAGVLCLSL--ADDGYSPTYRVCFVGMGMVYFAMGPYVVFVGAKRFHQAAQVMKGSVHDTYSFFSGSHQRGLTYLMMTLAVVTVALMATQLSADLY 198
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1190.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LJ65_9PHAE5.240e-5137.20DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKT5_ECTSI2.120e-2880.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKT6_ECTSI5.610e-2851.91DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1190contigA-nodosum_M_contig1190:189529..199192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1662
Hectar predicted targeting categoryother localisation
Exons3
Cds size1128
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866609.042534-UTR-A-nodosum_M_contig1190:189528..1896361680866609.042534-UTR-A-nodosum_M_contig1190:189528..189636Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1190 189529..189636 +
1680866609.087753-UTR-A-nodosum_M_contig1190:198766..1991921680866609.087753-UTR-A-nodosum_M_contig1190:198766..199192Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1190 198767..199192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866609.0583863-CDS-A-nodosum_M_contig1190:189636..1896951680866609.0583863-CDS-A-nodosum_M_contig1190:189636..189695Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 189637..189695 +
1680866609.070917-CDS-A-nodosum_M_contig1190:196924..1978271680866609.070917-CDS-A-nodosum_M_contig1190:196924..197827Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 196925..197827 +
1680866609.0793676-CDS-A-nodosum_M_contig1190:198600..1987661680866609.0793676-CDS-A-nodosum_M_contig1190:198600..198766Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 198601..198766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1190.20.1prot_A-nodosum_M_contig1190.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1190 189637..198766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1190.20.1

>prot_A-nodosum_M_contig1190.20.1 ID=prot_A-nodosum_M_contig1190.20.1|Name=mRNA_A-nodosum_M_contig1190.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=376bp
MARRSVTIVASDGRREGVSWYEGATEAAVLRCVRLALGLEVKGTAHLLWK
SGDIVDFDKPITDGVTLYLDTAVAPYDDYYSYGGVGTAGSGSGSGAGGSG
SGNGNTSISGGSHSVGGLAHRRSSARVKIHPEYSAGGYGTEDVGDQRAWG
SVSDLRTGLPPPTVARGGLIQRLLRLWCSDDSSDAERKSDDEQRPLLLAR
SSPSQQLHHEENAYNAIVRGSVAGDKRRYLLGAKVSVSEDEKCDPEQQRR
GILKLKRILAHLANERTLLAWVRVMAKLFSAGSLSMTLAAATEGANTVIL
VVLGVMYFVLCPYVVFIGSSRFHQVKAVMQGTVHETYSHFAGKDLQGVNM
LMSLMAALTMGVMIVQLLSNIYWSR*
back to top

mRNA from alignment at A-nodosum_M_contig1190:189529..199192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1190.20.1 ID=mRNA_A-nodosum_M_contig1190.20.1|Name=mRNA_A-nodosum_M_contig1190.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9664bp|location=Sequence derived from alignment at A-nodosum_M_contig1190:189529..199192+ (Ascophyllum nodosum dioecious)
CGGCACCTTAACGAGATTCGAGACACCCTTGCGCAAGAAGAAACTAGAGG
AGAGTACGACGGTCGAAGCCTTTGCGCTTGTTGACGGAGATCATTTCAAG
GGTTAAGTATGGCCCGGCGTAGCGTCACCATCGTCGCTTCAGACGGCAGA
AGAGAAGGTGTATCCTGGTGAGGATTTTTCGCGCTCAAGGGTCGTCCGAA
GGTCTGAAAATGCCGCCTTCGTAGGTTACCAATTTATAGCAGTATTTCGC
GCGCAGTGCAGATTTCCATCCTTGCTCTAGTTTTCACTTTCTCATTTGTC
ATGTCAGTGCAACATCTGCCCACAAAAAAAAAATCGCTGCCCTACAGTCG
GGGTCCCTGTTCCTTGTATGTTGTTGTTGTTGTTGTTTTCTTCACATTAA
CCGATCGGGCCTCAACCATACCCAATAATACACGTGGTTGCCAATCCGGT
ACGTGGTCTGCTGGACAGAAAAAGATCAGAGGAACATCTACCAAGCTCCA
ATGAGAGCAAAGAAAAACACAAACACACAAACGACAAAGAGAAAGGAACA
TGAATAACAAAATACACAGGTCAGAGAAAGATAAGCGAGCGGCATTCGAT
AGAGAGAGTTTGGCATAGTGCCGGCCGCGAGCCATCTGATACCCTCCCGG
CTCGCAACCGTGCACCCCAAAAAAAAAAAAAAAACAGCGCGTAGCATCGT
ACTTAAGGGTTTCAGTTTACTAATGGCACAATCGACGTCGCTTAGGAGTC
CTTGGGTTGGCCCAATCAACGCGGTTCGAAAACGTCTTAAGCTTGCTACA
GTCACACCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCGTCTCTTCT
TCTGCCGTTGATTGGACGCATTCTCTTCTTCCCTCACCCACGCGGCCATA
AACCTACAACCCCCTTCTTGTACGGTGTTGTACCATGCCCCAGGTCGAGT
GCGGCGGTTTTCCAGTCCCCCGTGACGCCAAATAGCCGAAGATCATCTGC
CACGCAGTCCGTCCACTCTTTCTCCTTCCCCCGGTCCACGTTTCCCGCGT
TCTCGAGTTCTCCCGACATGACCCTCTTGGGTAGCCTGTGGTCACCCATG
CGGAGTAGCGCCCCGCCCACAACAACCTCCTCGTGCGTACGGTTGTTTCG
ATGCTCTCGCATTGGGTTCGGTGAAGGGCATCTTTGTACGAGAGGATGCG
CTTGTTCAACGACTTGCACCAGGCTCCCAGAATTCGAAGCAACATCCCTG
TGGTTACAGGGAGCTTGGCGTAGTGGCACTTCAGGGGGGTCCACGTCACG
CATCCGTACAAGAGAGCTTCTAATACCTCGGACCTCACCATCCGCGCCTT
CAGAGGCAGCAGGCTTCTCGGGAGGTCGTACAGTTCCCGCTTGTAGCGCT
TGAAACCCATCCACCCCGCGCGGATCCGCCGGTCGATCTCGTCTGATAGG
TTAGGCATTTCAGTCACTGTGCCTCCCAAGTAGGTGAAGGAGGTTGTCTG
ACGGTACTGTTGCCCCGTGGCGTTGAAGACTATCTTCGTTGCCGGTGCGC
GGGATCGGCATGCACATGGTCTCCGTCTTGCTCTCTGAGATGGTCAGACC
AAATGCGCCGAAGACTTCGACGAAGACCGCCATCATCCGCCCCAACCCGC
GCGTCGACCGTGACACGATGCACGCGTCATCCGCATACAGCATCCCCCAA
ATAGCGCGCCGCACACATTCCAGTGCCGTTTCAGGACCAACTTTCGACGG
CTGTTCGCGTAGGTGGACAAGATCCGCGAGTATGTCTGCGTCCTTACTGA
ATCTCTCCAGTACGATGCGGAGTATTGCAGCGAAGAATACATTAAACAGC
AGCGGGGAAAGTACGCATTCGACGGAGCCCCTGTGCCACCTCGAACCACT
CCGAGCATCGGCCGTCATCGCTTCGCACGCATGCTTTCATCCCATCGTGG
AATTGGCGGATCACTTCTATCATCTGCGGTGGTGTTCCGAAGCGAGCGAG
CACCTGCCAGAGTAGTGTGCGGTCGACTGAGTCGTATGCCTTTTGCAGGT
CGATGAAGCTGTCGAGGCCGGTCGCCCCGGTGGTTCAACGGGTAACCTCG
AAACCTTCTTGACGTTGGGACGTGGGTTCGAATCTCGGTGTCGTCACACG
AACTGGGATTTTTCCTCACCCAACAAGTAGAAAGTAGAAAGCGATTAAAT
TGTTAGTCCACAAAGTCGACTTTACGGTCGACGAGGGAAAGAAACGGCTT
AATCCTCCTCGCGAGAAAAATTAAGGCAAGTGCCGCAGAAGGGAGGTGGA
GGAATCCTGTGTGACCTTCTCCTGTGTGACCCCGGCTGGTACGTCCAACG
AACTTTAGCCCAGAATAAATGGGGTGACAATACACACACACACATGGTGA
CACATATAGCAGTATGGATCAACCGGGTAAGGTTGCCATTCCTGCACGTG
GTCAGTTGAACAGGGAAGATGAATATTTCCATGTACGCGTGGGAAAATGA
ATATTTGCATGTACGCGTTCGCGCCAGAGAAGTTGGTCTCGCGAGACGGG
TTCGACAGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGTTAA
ATCTGGTGCTCACTCACGGAATTCCTCCCGAGTTCCGCGGCGGCGTCCAT
TTATTTATTTAAACCGCCATACGCCATCGGGACAGTCCCGAGTTTATCGG
GTCACGTAATTGCGTACCGATGGCGTTCACTGCCCAGAGTCCACCGGCAC
AGGGCCATAAACCTCAAGGTAGTCCCGAACGAGTGCTGCCTTGGCAGGTC
ACCATCCACAGGGACCAATTGATATACGCCTCTATTTCCCACACCCACTA
TTGGTATGAAGTGGACATATTGAAAGTGTGTATGTATGTATGTATGGTCA
GCACATGTAGCAGATTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTC
GTGGTCAGCTGAACAGGGAAAATGAATATTCCCCTGTCCCCGTGCGTGCC
TGAGAATTTGGTCTCGCGAGACGGGTTTAGCCGTCCCGTCCCGCGTCAGC
CTGGTCATTCTCCATACTCAGACTGAATCTGGAGCTTACTTACGGGATTC
CTCCCGAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCATCG
GGTCTGTCCCGAGTTTATCGGGTCGCGCAATTGCGTACCGATGGCGTTCA
CTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGATAGTTCCGA
ACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTCATATTCGCCCCTC
TTTCCCTCATCCACTATTGGTACCGGCAACTCAAAGCTATACGTTTATAG
TTTGATGTCGGAGCCTATGCAAGCAGCTGCGGTCTCGTGCTCTTTGACTG
ACCTCTGGCTTTTGACTTTACTCCCACGACATGTTCCATTTTAGACTGTA
TTTTATAGAAAAATCTGAACGCATCTACAGCAGTAGTACATCTTCTGCTG
TCATACTGAATGCTACGCTTCCACCTATCGCCATGTGGGTACTGTACATC
AAAACCAGAACGCTTAATACATACGAACCTTACTGCATTTTTGCTGTGTG
TGTTTTTTTTCTTCCCATTTATTCTGGACGTCAGGTCCGTTGGATGTACC
AGCCGGGGTCACACAGGAGGAAGGTCACACAGGGTTTCTCATCCACCTTC
CTTCTGCGGTGCATGCCTTCAATTTTCTCGCGAGAAGGATTCAGCCGTTC
CTTTCCCTCGTCGACCCTAAAGTCGAATTTTGTATACTAACGATTTAATC
GTTCTCCACTTGTTGGGCATTTTTATTTTTATTTTTATTTTCATTTTTTA
GTGAGGAAAAAGGCCAGTTACCAGAATTCGAACTCACGTCCCAACGTGTC
AGAAGGTTACGAGGTTACCCACTGAGCTACCGGGGCGACCGGCCGTAGGA
TGTAGATAGTCGCCGAAACAAGGGTGTGGTTGTCGAATGATGCACACTAC
AGGCAGACCGTAGTACAGTATGTCAGAACATATAGCTTATACTGAGCAGG
GGGGGAATCATCATTCATGATTCTCGATGGAATTTCTTCTCCCGTTATAC
ATTTCGGTAGGGTCATGGTCATACTAGACGTTTGGAGAAGCCCACCCGTA
GTAAGTCTTTTCTCGGCGAGTACGAGTACTTTCGTTTCCGGGCGTCTATA
GACGCCTCTGTGTCTCCCCTGATCCTATTCTAGTAATAATACGTTCTTTA
TATCATCTTTCCAAGACTCTCAGCCCTTCCGTCAGACGAGGGTGTTTCAA
ACACAGTACAGGTATGCTAAACACTAAACATTACATTTCATTTCACCGCA
ATCTCTCGCTGACACTCGTGCAGTCGAACTGCACACAAGACACAGCAGTA
AGTAGTATACGGTATAGCTCTACGAAAAGAAATCAAAATATTTAATCAGA
CTAGGGCGGACAGTATTTTTGCGTCGATGTGTTGGTGTTCCTACAATTCC
GAAAACCTCGTACAGAAATAGAGAAAGTGGAAAGAGGTTTTCTCCCGGAG
ACCATGCTTTAACACTGCTGTCACCTTCCCCGAGACGAAGCCTTTTTTAC
CGTGTGCGACTGCGTTTACTGAGGAACCGGACTACCTTAAATCCCACGTG
CCAAATCCTCACTATAATTAATGAGATATTATCGAGAGGTTCCAAGTAGG
TACAAACAGCAGTAACATTTTTTAGAATTGTTTGTTCTAACCGCGGGTGT
TTTCAACCATACGTCTTGACACAGTTCATGATACCATACACACACCCCGA
CGCTGCGGATGCTCGAAAGGATATGGTTGGAATGCATTCAGATATTTCTG
TAAACCTACACATGCGTCCTTCTGTACAAAAATAGAGACAATTCTGCTGC
ACCTGCAGCTCTAGCACTGTTTACAATTGGACTCTCCGGTGTACAACAGC
AGGATAACTCTAATGTATAATACTGTGTGTTGCATCCGTTGCCCTTGCCC
TTGTCTTCATTCCTGGGTTGTATTCCACCGCTCATAGGGCTACCTTCCCT
GCGTTTTATGTGGTTGCCTCTAGTTTGTTTCTACTGTTTGTGAGATTTTG
TTTGTGGTTTTCTTTTTTTATCGCGACGATGTCCTTTCCTGGCTACTTTC
TTGTCCGTTCTCCTTTGTCTGCTTTCCCTGCTTATCTCCGATTTCCGGTT
TGATTTGGTTTGGTCCCGCCTATCTTGTGACCACGGCTGGATTAATTCGT
AGCGGATCAGTTAATGTGAGATAAACAACAAGAACAACTGTACAGAGCAG
CAATGCTCGGGGGCTCAAAAGCAATATTTTGAAGTCGTGCGGTGAGGGTC
GATCGTTTATCATAAACCAAGCTATAGTAGCGTAGCGTTCATTTCTGGCC
TCTCGTGCACAACGACACGACGAGGCTTGACATTACTGTGTATGATACCT
GGTAGAACAACAGACGGGACGGGAGACGTTGTTCGTATCTCCGCCACTTG
TACGGGCGCGACAACGTGCGTCCATGTTACGGAATCTTGCACGAGCACCG
AACATCGCCTCGTTGAAACGATCACGCCAAGAACGTGTTTGTAAAAAAGA
TTCAAGGAAAGCAACTCCCAAATCTTGTGGATTTACCTATTTGCAGTCCA
TGGACTTTCAGAGATAATCACAGTCCAAACATCATCTATACTGTGAACAG
GAGAAACCAGCCCACTGCCAAGGATCTTTACTTCTTAGATTGGGTACGCA
CCAGATACAAAACCGAACCAGAGACGCACACAAAATCAGCCCACACGGTA
CTATGACCGAGCGGACGCCAGCTATGAATTGGGACCACGCGGTCAGCTGG
GGTGGGGGTCTGGGTTAGCGTTAGCGATACGGGTCGGGTTGGCCAAGAGG
TAAAAAAAAACAATCTAAGAAGTAAAGATGATGTTTGGACTGTGGTTCTC
TCTGAAAGTCCATGGACTGCAAATAGGCGCTCCCAAATCTTGTGCGCTAC
GTATAATATTTGGGAGCACGGGTGTTGGGTGATGCTTTCACTTGCCCCCC
CCTCCCCCCCGTAGTGTGCGGAATATCTGTGCACTCCAGCACGTGAGCTC
TCTCGAAAAAACAGATGGGCTCGATGGAATGGTTCTTGCTGTGCCACCCG
CACGGGTCGCGATGTCGCCAGTCGCTGGTACAGTGCAGCTCCCAAGACAC
CACCCGTTCCCATCTCCAGTTGTGGAAGCACAGGACGCTGGCTCGGAGCA
CCTACACGCCGATAAAGTAACTGCTATACTGTACTAACGATGTTAAGTAT
CATCCGGCAGCAGCAGCATTCATAATTAATAGCAATAGAGGATATTTCAG
TCCTATCGCTAGGTTGCAAACCGACATATTATGCGACACTCTACAAAGAA
AGATGACACCGACCAAAGGTAAATCAGTGAAACAAATTTCCCCCCTTTTT
CCACACCGAGCGTAATCCCGATCAACTATTTTAGATCAAGCTAGGGCTGC
TGTTGCCTACCCAGGTCCAGCGGTATCAGCAGCAAAGCGGAACAGTCACG
CCATGACCGGTTCGATCAACCAAACCCGCGTTTCTCAAAGGTGACGTCAT
GCAGAAAAAAGAAAAGTGTTGTAACGAGGTCCATGGGGGTGGAAGCCTTG
AGCTGTGAAGTCGGTGCCCGAGCTAGCATCCACCCGTCCAAAGCGCCAAG
GTCGCTTGGAAAGCGCCCCAGGACTTTGCCCCTTCGCCGTTCCAGATTGG
CTCTCGTAAGAATGAAACAGTCCGTAGTCAGAAATCAGCTTTATCTCCCA
AAACCTCCCGTTTCTCGCCTTTGCTTTTCGCGCGCAAGGGTTCATCACTC
CATTGACTCGTCGACGGTCGAGCCATCCTCCATCCTCGCCGAATCTGGTG
CTTACTCATCCAATAGTACGTGCAGCAACACGCTTGCGCGTGCTGTCGCA
TCCTATTAGGCTTTCCGCGAAAGTATCACCTACCTCTCGCGTGCCATATG
CTCCCGAACGACACCATATTGGCGTTCGGGAGAGGCGCACCTGGCGAAAC
CGTTCAGACACAGCCAAGATGTCATCGCTTGTCAACCAACCGACTGGATC
GAGTGGACAGCCTGTTGGTTTCACCTCTCGAGGGTGAGTCCGGCCTTAAA
CCCGCCGGAAAGATCCTCGCCCCCCCCCTCCCGATTCATACCCGAAAACC
AGATTTCCTAGGGAGAGGGAACGAGGAATGGGATTCCACCATTTCCACGA
CGCAAACAGCGACACCAGCAAAAGATTCCACCCACGCGGTCGACACATAC
CTTCTACTACATATGAACTCCCTGCCGCCCCGACCCCCCGCCCCCTCCCC
CGCTTTGCTCACTGCTTCAACGACCACCAACGTGCGCGAGCGACAGGTAC
GAGGGCGCAACGGAAGCTGCGGTCTTGCGATGCGTGCGCCTCGCCCTTGG
CCTCGAGGTGAAGGGGACCGCCCACTTGCTTTGGAAATCCGGGGACATCG
TCGACTTTGACAAGCCCATCACCGACGGCGTCACTCTCTACCTTGATACT
GCCGTAGCGCCCTACGATGACTACTATTCGTACGGTGGCGTAGGCACCGC
CGGCAGTGGCAGTGGCAGCGGCGCCGGTGGAAGCGGTAGCGGGAACGGCA
ATACCAGCATTAGCGGAGGGAGTCACTCGGTCGGCGGCTTGGCTCACCGA
CGAAGCAGCGCGCGTGTGAAAATTCACCCCGAGTATAGCGCCGGCGGGTA
CGGCACTGAAGACGTCGGCGATCAGCGGGCGTGGGGGTCTGTTTCCGATC
TCCGAACGGGATTGCCGCCCCCGACGGTAGCCCGCGGCGGGCTCATCCAG
CGATTGCTCCGGCTCTGGTGCAGTGACGACTCCAGTGACGCCGAGCGAAA
GTCGGATGATGAGCAGCGGCCCTTGCTGCTCGCGCGGTCGTCGCCGTCGC
AGCAGCTGCACCACGAAGAAAACGCGTACAATGCGATCGTCAGGGGATCG
GTTGCGGGAGATAAACGGAGGTATCTCCTCGGAGCGAAAGTTTCTGTGAG
CGAGGACGAGAAGTGCGACCCCGAGCAGCAGCGGCGCGGGATCCTCAAGC
TCAAGAGAATTTTGGCGCACCTCGCGAACGAGCGGACGCTGCTGGCATGG
GTGCGCGTGATGGCAAAGCTGTTTTCGGCGGGGTCGCTTTCGATGACCCT
GGCGGCGGCCACCGAAGGGGCAAACACGGTGATCTTAGTCGTCCTGGGCG
TCATGTACTTCGTGCTGTGCCCGTACGTGGTGTTCATCGGCTCGAGCAGG
TAGCGAGAGGGCGGGAGGACAGGAGGGTTCGGTCCGCAGTCCGTCCCGTT
TTTTTCGCTGTGCGCGGTCGCCTTGTTCAATGTGCCGCCCATTCGAGAAG
CATGGTAAATTGCAGGTTTCCCCTTTTGTCGTATTCGTGCGAGGGTTGTT
GTTGGTATACTCGTACGTAATATTGAGTTGTGTTGTGTGTAGGGAGTGTG
TGTGACCTGCCTGCCGTCCCCCCCCTCCCGACCTTTGTGTTGAGTCTATG
GCGCGCGGGACAATTTTTCCTAGCCTTTCGCGCACCTTCACGCCGCCCTT
CTAAAGTCAGTACGCTTGATGTTTCATTCCGCCTCCAAAGACACCTCTTG
CCCGCGTGCGATCAAGCTCCCGCTTTCGTTGCCGACCTCAAAAACAAAAC
AGAAAATCATGGTTAAGGATTTTCGCTCGCTGAGGAGCAGTTTCCCTGCC
CGTTTCGGGGATGGTCGGTCGTTGTGTTGCGCGCGCCATGGATAGGCCAG
GCCGGCCGCCTTGGTGGTAGAGAAAAACGACTGCTGACCTTTCCACTATT
CTGCACTTGAAAAGCTGTACCGTGATGCATGATCCATGATCCGGAGGTTG
TGTGACGCTTCGTGGCGTAATATATGCGGCAGACCTCTCGACCAGTACCG
ATGCGACAAGCCAACAACAAAAAACGCTTGTTGCAGCTCCGAAACCGACC
TCCCCCAATCCTTTGATGCCATCGTCCCCTTCCATATTCCTCCCTCCCCT
GGACGCGATTTGGGGTTTTCAGGTTCCACCAGGTGAAGGCAGTCATGCAA
GGGACCGTGCACGAAACCTACTCCCACTTTGCCGGAAAGGATCTGCAAGG
GGTGAACATGCTCATGTCGTTGATGGCGGCCTTGACGATGGGGGTCATGA
TTGTTCAGCTGCTGTCGAACATCTATTGGTCTCGCTGATATTATGACGTT
TTTGTTGACACAAAGTGTTGTGTACTGTTTTGTGTTTTTATCCTTTAGAA
AAAAATATATGTTTTCTCGTTCCGTCCTATTTTTCGGGGGGGGGGGAGAT
TCGTAGAGCAAAAAGCTGCTTTGGTCGGTTTGTCATACCCCCTTTTGTCC
ATGAGCTTTTTTTCGTCGGAGGCAATTGTCAACTGTGAAAAATAGTCATA
GTCTACGGTGTTACACGGGCCAGTTTTCTGTCGAAACCAAAAGCATTTCA
ATAACAGGCAGGCCTGGTACCTTATGTTCGAGAGTCTAGGATTTTTTTGT
AGAAACCTCAAAGTCGAGGCCGACTCGTGCAAGGCTGAGAAATCGGGAAC
TAGCCGATGAGGCTGAGCTCGTCAGTCTGTCTGTCGGGTAGAGGGTAGTA
GATAGATGGAAGAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1190:189529..199192+

>mRNA_A-nodosum_M_contig1190.20.1 ID=mRNA_A-nodosum_M_contig1190.20.1|Name=mRNA_A-nodosum_M_contig1190.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at A-nodosum_M_contig1190:189529..199192+ (Ascophyllum nodosum dioecious)
ATGGCCCGGCGTAGCGTCACCATCGTCGCTTCAGACGGCAGAAGAGAAGG
TGTATCCTGGTACGAGGGCGCAACGGAAGCTGCGGTCTTGCGATGCGTGC
GCCTCGCCCTTGGCCTCGAGGTGAAGGGGACCGCCCACTTGCTTTGGAAA
TCCGGGGACATCGTCGACTTTGACAAGCCCATCACCGACGGCGTCACTCT
CTACCTTGATACTGCCGTAGCGCCCTACGATGACTACTATTCGTACGGTG
GCGTAGGCACCGCCGGCAGTGGCAGTGGCAGCGGCGCCGGTGGAAGCGGT
AGCGGGAACGGCAATACCAGCATTAGCGGAGGGAGTCACTCGGTCGGCGG
CTTGGCTCACCGACGAAGCAGCGCGCGTGTGAAAATTCACCCCGAGTATA
GCGCCGGCGGGTACGGCACTGAAGACGTCGGCGATCAGCGGGCGTGGGGG
TCTGTTTCCGATCTCCGAACGGGATTGCCGCCCCCGACGGTAGCCCGCGG
CGGGCTCATCCAGCGATTGCTCCGGCTCTGGTGCAGTGACGACTCCAGTG
ACGCCGAGCGAAAGTCGGATGATGAGCAGCGGCCCTTGCTGCTCGCGCGG
TCGTCGCCGTCGCAGCAGCTGCACCACGAAGAAAACGCGTACAATGCGAT
CGTCAGGGGATCGGTTGCGGGAGATAAACGGAGGTATCTCCTCGGAGCGA
AAGTTTCTGTGAGCGAGGACGAGAAGTGCGACCCCGAGCAGCAGCGGCGC
GGGATCCTCAAGCTCAAGAGAATTTTGGCGCACCTCGCGAACGAGCGGAC
GCTGCTGGCATGGGTGCGCGTGATGGCAAAGCTGTTTTCGGCGGGGTCGC
TTTCGATGACCCTGGCGGCGGCCACCGAAGGGGCAAACACGGTGATCTTA
GTCGTCCTGGGCGTCATGTACTTCGTGCTGTGCCCGTACGTGGTGTTCAT
CGGCTCGAGCAGGTTCCACCAGGTGAAGGCAGTCATGCAAGGGACCGTGC
ACGAAACCTACTCCCACTTTGCCGGAAAGGATCTGCAAGGGGTGAACATG
CTCATGTCGTTGATGGCGGCCTTGACGATGGGGGTCATGATTGTTCAGCT
GCTGTCGAACATCTATTGGTCTCGCTGA
back to top