mRNA_A-nodosum_M_contig1183.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1183.22.1
Unique NamemRNA_A-nodosum_M_contig1183.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A0U1WNN6_SARFS (Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A0U1WNN6_SARFS)

HSP 1 Score: 345 bits (884), Expect = 5.850e-115
Identity = 187/275 (68.00%), Postives = 205/275 (74.55%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGLT----------LTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEH+MRDVKSGWLIRYMHANGASF    F +++      GL           L WS   IY         G ++P      W   + +TS+  +  V       ++   ++  G  + VGNPTLN FYSLHYLLPFLIT MVFVHLGLLHKDGSNNPLGIKT+ ANINFYPYIYVKDLVAFF LV SLS+F+FYFPNALGEPDNYLEADPYSTPAHIVP
Sbjct:    9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFMLVYAHIFRGLYYGSYMEPRQHLWWSGTLIYVLMMATAFIGYVLPWGQMSFWGATV-ITSFFSIIPVI-----GKEVVMWIWGG--FTVGNPTLNRFYSLHYLLPFLITGMVFVHLGLLHKDGSNNPLGIKTRVANINFYPYIYVKDLVAFFVLVFSLSVFIFYFPNALGEPDNYLEADPYSTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: D0IPB5_SACJA (Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepID=D0IPB5_SACJA)

HSP 1 Score: 329 bits (843), Expect = 3.750e-109
Identity = 179/275 (65.09%), Postives = 198/275 (72.00%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCL+IQILSGAFLAMHYA ETHYAFSSVEH+MRDVKSGWLIRYMHANGASF    F +++      GL           L WS   IY         G ++P      W Q +S      +  +F  +    K       G  + VGNPTLN F+SLHYLLPF+I  +VFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFF L+  LSI +FYFPN+LG+PDNYLEADPY TPAHIVP
Sbjct:    9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYVLMMATAFIGYVLP------WGQ-MSFWGATVITSLFSIFPFIGKEVVMWLWGG-FTVGNPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFVLMSMLSIVIFYFPNSLGDPDNYLEADPYGTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: E6ZES8_ECTSI (Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES8_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 2.510e-108
Identity = 176/275 (64.00%), Postives = 199/275 (72.36%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            ILSWVDSHIIDYPTAMNLNYNWSFGS+AGFCL+IQILSGAFLAMHYA ETHYAFSSVEH+MRDVKSGWLIRYMHANGASF    F +++      GL           L WS A IY         G ++P      W Q +S      +  +F  +    K       G  + VGNPTLN F+SLHYLLPF+I  +VFVHLGLLHKDGSNNPLGIKTKTAN+NFYPY+YVKDLVAFF L+  LS+ +FYFPN+LG+PDNYLEADPY TPAHIVP
Sbjct:    9 ILSWVDSHIIDYPTAMNLNYNWSFGSSAGFCLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMEPRQQLWWSGALIYVLMMATAFIGYVLP------WGQ-MSFWGATVITSLFSIFPFIGKEVVMWLWGG-FTVGNPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANVNFYPYMYVKDLVAFFVLLSVLSVVIFYFPNSLGDPDNYLEADPYGTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A0A7LKY8_SACLA (Cytochrome b n=14 Tax=Phaeophyceae TaxID=2870 RepID=A0A0A7LKY8_SACLA)

HSP 1 Score: 326 bits (836), Expect = 4.310e-108
Identity = 178/269 (66.17%), Postives = 196/269 (72.86%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIYGGLVPLFTF**WQQHLSVTSYHG---VKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCL+IQILSGAFLAMHYA ETHYAFSSVEH+MRDVKSGWLIRYMHANGASF    F +++      GL           L WS   IY  L+    F  +   L   S+ G   +  +F  +    K       G    V NPTLN F+SLHYLLPF+I  +VFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFF L+  LSI +FYFPN+LG+PDNYLEADPY TPAHIVP
Sbjct:    9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYV-LMMATAFIGYVLALGQMSFWGATVITSLFSIFPFIGKEVVMWLWGGFTAV-NPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFVLMSMLSIVIFYFPNSLGDPDNYLEADPYGTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A8F0FCD4_9PHAE (Cytochrome b n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0FCD4_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 2.000e-106
Identity = 176/275 (64.00%), Postives = 198/275 (72.00%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            ILSWVDSHIIDYPTAMNLNYNWSFGSTAGF L+IQILSGAFLAMHYA ETHYAFSSVEH+MRDV++GWLIRYMHANGASF    F +++      GL           L WS   IY         G ++P      W Q +S      +  +F  +    K       G  + VGNPTLN F+SLHYLLPF+I  +VFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFAL+  LS+ +FY PN+LG+PDNYLEADPYSTPAHIVP
Sbjct:    9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFGLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVENGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMAPRHQLWWSGGVIYVLMMATAFIGYVLP------WGQ-MSFWGATVITSLFSIFPFIGKEVVMWLWGG-FTVGNPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALLSMLSVVIFYLPNSLGDPDNYLEADPYSTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: Q2TUA7_DICDH (Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID=Q2TUA7_DICDH)

HSP 1 Score: 308 bits (788), Expect = 6.600e-101
Identity = 162/275 (58.91%), Postives = 192/275 (69.82%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            +++WVDSHIIDYPTAMNLNYNWS+GS AGFCL IQILSGAFLAMHY SETHYAF+S+EH+MRDV +GWLIRY+HANGASF    F +++      GL          +L WS A IY         G ++P      W Q +S      +  +F       K       G  Y VGNPTLN F+SLHY+LPFLI  +VFVHLGLLHKDGSNNPLG+KT+ AN+NFYPY YVKDLV FF L+  +S+F+FY+PN LG PDNY+EADPY TPAHIVP
Sbjct:    9 LVAWVDSHIIDYPTAMNLNYNWSYGSAAGFCLGIQILSGAFLAMHYVSETHYAFASIEHIMRDVDNGWLIRYLHANGASF----FFIVVYAHIFRGLYYGSFMEPRQSLWWSGAIIYVLMMATAFIGYVLP------WGQ-MSFWGVTVITNLFTVIPVIGKDIVMWIWGG-YTVGNPTLNRFFSLHYVLPFLIAGLVFVHLGLLHKDGSNNPLGVKTRLANVNFYPYFYVKDLVGFFVLLSVMSVFIFYYPNMLGHPDNYIEADPYGTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A8E8PEC1_9PHAE (Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEC1_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 5.080e-96
Identity = 157/275 (57.09%), Postives = 190/275 (69.09%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            I+SW+DSHIIDYPTAMNLNYNWSFG+ AGFCL+IQILSG+FLAMHY S+THYAFSS+EH+MRDVK GWLIRY+H+NGAS     F +++      GL           L WS   IY         G ++P      W   + +TS   +       S  R+   ++  G  + VGNPTLN FYSLHY LPFLI+ +VF HLGLLHK+GSNNPLG +T+  N++FYPY+Y KDLV+ F L+  LSI VFYFPN LG+PDNYLEADPY TPAHIVP
Sbjct:    9 IISWIDSHIIDYPTAMNLNYNWSFGAAAGFCLVIQILSGSFLAMHYVSDTHYAFSSIEHIMRDVKGGWLIRYIHSNGASL----FFIVVYAHIFRGLYFGSFMEPRQQLWWSGGVIYILMMATAFIGYVLPWGQMSFWGATV-ITSLFSILP-----SVGREVVMWIWGG--FTVGNPTLNRFYSLHYFLPFLISGLVFFHLGLLHKEGSNNPLGFRTRIGNLSFYPYLYAKDLVSLFILLSLLSIIVFYFPNTLGDPDNYLEADPYGTPAHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A7S6UA51_9STRA (Cytochrome b n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA51_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.330e-85
Identity = 145/283 (51.24%), Postives = 172/283 (60.78%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILS----------------------W-----FMLIILGVCTTGLTLTWSPASIYGGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            IL+WVDSHIIDYPT MN+NYNWSFGS AGFCL IQILSG FLAMHY  E H AFSS+EH+MRDV +GWL+RY+HANGASF                         W       L+++     G  L W   S +G  V    F       S     G   V   +               + VGNPTLN F+SLHYL+PF+I  +VFVHL LLHKDGS NPLG  +  ++I FYPY YVKDL+ FF L+ SLS+FVF++PN+LG PDNY+ ADP  TPAHIVP
Sbjct:   11 ILAWVDSHIIDYPTPMNINYNWSFGSAAGFCLGIQILSGVFLAMHYTPEIHLAFSSLEHIMRDVNNGWLVRYIHANGASFFFIVVYCHIFRGLYYGSYIEPRQELWCSGVIIFLLMMATAFMGYVLPWGQMSFWGATVITNLF-------SAIPVAGDAIVQWLWGG-------------FSVGNPTLNRFFSLHYLMPFVIAGLVFVHLALLHKDGSGNPLGANSSFSSIPFYPYFYVKDLLGFFLLLTSLSVFVFFWPNSLGHPDNYIPADPLVTPAHIVP 273          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A4Y5T8W2_9PHAE (Cytochrome b n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T8W2_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.450e-83
Identity = 142/275 (51.64%), Postives = 184/275 (66.91%), Query Frame = 1
Query:    1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            IL+W+DSHIIDYPTA+NLNYNWSFGS AGFCL IQI++GA+L+M Y  +   AF ++E++MRD+K GWLIRY+HANGASF    F + I      GL           L WS A I+         G ++P      W Q +S  +   + ++        KR      G  + VGNPTL+ FYSLH++ PF++  +VF+HLGLLHKDGSNNPLGIKT+ +NINFYPY YVKDL++FF ++  LSIFVFY+PN L +P NY++ADP+ TP HIVP
Sbjct:    9 ILAWIDSHIIDYPTALNLNYNWSFGSAAGFCLGIQIITGAYLSMTYIGDIELAFVTIEYIMRDIKFGWLIRYIHANGASF----FFMAIYCHIFRGLYYGSYKEPRQPLWWSGAIIFLWSMATAFMGYILP------WGQ-MSFWAATVITQMLTIIPKIGKRILIWLWGG-WVVGNPTLHRFYSLHFIFPFVLVGLVFIHLGLLHKDGSNNPLGIKTRLSNINFYPYFYVKDLLSFFVMLFVLSIFVFYYPNFLLDPLNYIDADPFDTPPHIVP 271          
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: D2Z248_HETAK (Cytochrome b n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z248_HETAK)

HSP 1 Score: 241 bits (616), Expect = 6.420e-75
Identity = 132/263 (50.19%), Postives = 171/263 (65.02%), Query Frame = 1
Query:    7 SWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGAS--FILSW---FMLIILGVCTTGLTLTWSPASIYGGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSS----DRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
            +++ SHII+YPT +NLNY WSFGS AG CL+IQI++G FLAMHY     YAF+S+EH+MRDV +GWLIRY+HANGAS  FI+ +   F  +  G  T    L W+   +   L+    F  +       S+ GV  +   +S+     +    ++  G  + V N TLN F+SLHYLLPFLI  M  VHL LLH++GSNNPLG++ KT  I FYPY YVKDL++FF L+   S FVF+ PNA+G PDNY+ AD   TPAHIVP
Sbjct:   11 AFISSHIIEYPTPLNLNYMWSFGSAAGICLVIQIITGIFLAMHYTPHVDYAFASIEHIMRDVNNGWLIRYLHANGASIFFIVVYCHIFRGLYYGSYTKPRGLLWASGVVIFILMMATAFMGYVLPWGQMSFWGVTVITNLFSAIPFVGKSIVEWLWGG--FSVDNATLNRFFSLHYLLPFLIAGMTIVHLALLHQNGSNNPLGVEAKTNKIPFYPYFYVKDLLSFFFLLWLFSFFVFFHPNAMGHPDNYIPADSLQTPAHIVP 271          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1WNN6_SARFS5.850e-11568.00Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A... [more]
D0IPB5_SACJA3.750e-10965.09Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepI... [more]
E6ZES8_ECTSI2.510e-10864.00Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A0A7LKY8_SACLA4.310e-10866.17Cytochrome b n=14 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A8F0FCD4_9PHAE2.000e-10664.00Cytochrome b n=1 Tax=Laminaria ephemera TaxID=3093... [more]
Q2TUA7_DICDH6.600e-10158.91Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID... [more]
A0A8E8PEC1_9PHAE5.080e-9657.09Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=224924... [more]
A0A7S6UA51_9STRA1.330e-8551.24Cytochrome b n=1 Tax=Schizocladia ischiensis TaxID... [more]
A0A4Y5T8W2_9PHAE2.450e-8351.64Cytochrome b n=1 Tax=Ishige okamurae TaxID=233772 ... [more]
D2Z248_HETAK6.420e-7550.19Cytochrome b n=1 Tax=Heterosigma akashiwo TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1183contigA-nodosum_M_contig1183:249240..250007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3075.A0A087S9Z1
Preferred namecob
PFAMsCytochrom_B_C,Cytochrome_B
Model size768
Max annot lvl3041|Chlorophyta
KEGG koko:K00412
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.5e-35
EggNOG OGsCOG1290@1|root,KOG4663@2759|Eukaryota,37PDF@33090|Viridiplantae,34GP0@3041|Chlorophyta
DescriptionComponent of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis
Cds size321
COG categoryC
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866599.921791-UTR-A-nodosum_M_contig1183:249239..2496861680866599.921791-UTR-A-nodosum_M_contig1183:249239..249686Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1183 249240..249686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866599.998336-CDS-A-nodosum_M_contig1183:249686..2500071680866599.998336-CDS-A-nodosum_M_contig1183:249686..250007Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1183 249687..250007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1183.22.1prot_A-nodosum_M_contig1183.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1183 249687..250007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1183.22.1

>prot_A-nodosum_M_contig1183.22.1 ID=prot_A-nodosum_M_contig1183.22.1|Name=mRNA_A-nodosum_M_contig1183.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
MGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKT
KTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYS
TPAHIVP
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mRNA from alignment at A-nodosum_M_contig1183:249240..250007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1183.22.1 ID=mRNA_A-nodosum_M_contig1183.22.1|Name=mRNA_A-nodosum_M_contig1183.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at A-nodosum_M_contig1183:249240..250007+ (Ascophyllum nodosum dioecious)
ATACTTAGTTGGGTAGATTCTCATATTATTGATTATCCGACGGCCATGAA TTTAAACTATAATTGGAGTTTTGGTTCAACTGCGGGGTTTTGTCTTCTTA TTCAAATATTAAGTGGGGCCTTTTTAGCTATGCATTACGCAAGTGAAACC CATTACGCTTTTTCTAGTGTTGAGCACATGATGAGAGATGTAAAAAGTGG TTGGCTAATTCGTTACATGCACGCGAATGGGGCTTCTTTTATTTTATCTT GGTTTATGCTCATAATTTTAGGGGTTTGTACTACGGGTCTTACATTGACA TGGAGCCCCGCCAGCATTTATGGTGGTCTGGTGCCCTTATTTACGTTTTA ATGATGGCAACAGCATTTATCGGTTACGTCTTACCATGGGGTCAAACGAG TTTTTCTCTATTATTCCAGTGATAGGAAAAGATGTTGTTATGTGGATATG GGGAGGCTTTACTGTGTGGGAAATCCTACTTTAAACATATTTTACAGTTT ACATTACCTATTACCTTTTTTAATAACATGTATGGTCTTTGTCCATTTAG GTTTATTACATAAAGATGGATCTAACAACCCATTAGGTATAAAAACTAAA ACCGCAAATATTAATTTTTATCCGTATATTTATGTCAAAGATTTAGTTGC GTTTTTTGCGCTAGTTCTTTCGCTTTCTATTTTTGTTTTTTATTTTCCAA ATGCTTTAGGGGAACCAGATAATTATCTTGAAGCGGATCCTTACAGTACC CCAGCCCATATTGTCCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1183:249240..250007+

>mRNA_A-nodosum_M_contig1183.22.1 ID=mRNA_A-nodosum_M_contig1183.22.1|Name=mRNA_A-nodosum_M_contig1183.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig1183:249240..250007+ (Ascophyllum nodosum dioecious)
ATGGGGAGGCTTTACTGTGTGGGAAATCCTACTTTAAACATATTTTACAG
TTTACATTACCTATTACCTTTTTTAATAACATGTATGGTCTTTGTCCATT
TAGGTTTATTACATAAAGATGGATCTAACAACCCATTAGGTATAAAAACT
AAAACCGCAAATATTAATTTTTATCCGTATATTTATGTCAAAGATTTAGT
TGCGTTTTTTGCGCTAGTTCTTTCGCTTTCTATTTTTGTTTTTTATTTTC
CAAATGCTTTAGGGGAACCAGATAATTATCTTGAAGCGGATCCTTACAGT
ACCCCAGCCCATATTGTCCCA
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