mRNA_A-nodosum_M_contig1183.22.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A0U1WNN6_SARFS (Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A0U1WNN6_SARFS) HSP 1 Score: 345 bits (884), Expect = 5.850e-115 Identity = 187/275 (68.00%), Postives = 205/275 (74.55%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGLT----------LTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEH+MRDVKSGWLIRYMHANGASF F +++ GL L WS IY G ++P W + +TS+ + V ++ ++ G + VGNPTLN FYSLHYLLPFLIT MVFVHLGLLHKDGSNNPLGIKT+ ANINFYPYIYVKDLVAFF LV SLS+F+FYFPNALGEPDNYLEADPYSTPAHIVP
Sbjct: 9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFMLVYAHIFRGLYYGSYMEPRQHLWWSGTLIYVLMMATAFIGYVLPWGQMSFWGATV-ITSFFSIIPVI-----GKEVVMWIWGG--FTVGNPTLNRFYSLHYLLPFLITGMVFVHLGLLHKDGSNNPLGIKTRVANINFYPYIYVKDLVAFFVLVFSLSVFIFYFPNALGEPDNYLEADPYSTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: D0IPB5_SACJA (Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepID=D0IPB5_SACJA) HSP 1 Score: 329 bits (843), Expect = 3.750e-109 Identity = 179/275 (65.09%), Postives = 198/275 (72.00%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCL+IQILSGAFLAMHYA ETHYAFSSVEH+MRDVKSGWLIRYMHANGASF F +++ GL L WS IY G ++P W Q +S + +F + K G + VGNPTLN F+SLHYLLPF+I +VFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFF L+ LSI +FYFPN+LG+PDNYLEADPY TPAHIVP
Sbjct: 9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYVLMMATAFIGYVLP------WGQ-MSFWGATVITSLFSIFPFIGKEVVMWLWGG-FTVGNPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFVLMSMLSIVIFYFPNSLGDPDNYLEADPYGTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: E6ZES8_ECTSI (Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES8_ECTSI) HSP 1 Score: 327 bits (837), Expect = 2.510e-108 Identity = 176/275 (64.00%), Postives = 199/275 (72.36%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
ILSWVDSHIIDYPTAMNLNYNWSFGS+AGFCL+IQILSGAFLAMHYA ETHYAFSSVEH+MRDVKSGWLIRYMHANGASF F +++ GL L WS A IY G ++P W Q +S + +F + K G + VGNPTLN F+SLHYLLPF+I +VFVHLGLLHKDGSNNPLGIKTKTAN+NFYPY+YVKDLVAFF L+ LS+ +FYFPN+LG+PDNYLEADPY TPAHIVP
Sbjct: 9 ILSWVDSHIIDYPTAMNLNYNWSFGSSAGFCLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMEPRQQLWWSGALIYVLMMATAFIGYVLP------WGQ-MSFWGATVITSLFSIFPFIGKEVVMWLWGG-FTVGNPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANVNFYPYMYVKDLVAFFVLLSVLSVVIFYFPNSLGDPDNYLEADPYGTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A0A7LKY8_SACLA (Cytochrome b n=14 Tax=Phaeophyceae TaxID=2870 RepID=A0A0A7LKY8_SACLA) HSP 1 Score: 326 bits (836), Expect = 4.310e-108 Identity = 178/269 (66.17%), Postives = 196/269 (72.86%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIYGGLVPLFTF**WQQHLSVTSYHG---VKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCL+IQILSGAFLAMHYA ETHYAFSSVEH+MRDVKSGWLIRYMHANGASF F +++ GL L WS IY L+ F + L S+ G + +F + K G V NPTLN F+SLHYLLPF+I +VFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFF L+ LSI +FYFPN+LG+PDNYLEADPY TPAHIVP
Sbjct: 9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYV-LMMATAFIGYVLALGQMSFWGATVITSLFSIFPFIGKEVVMWLWGGFTAV-NPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFVLMSMLSIVIFYFPNSLGDPDNYLEADPYGTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A8F0FCD4_9PHAE (Cytochrome b n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0FCD4_9PHAE) HSP 1 Score: 322 bits (825), Expect = 2.000e-106 Identity = 176/275 (64.00%), Postives = 198/275 (72.00%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
ILSWVDSHIIDYPTAMNLNYNWSFGSTAGF L+IQILSGAFLAMHYA ETHYAFSSVEH+MRDV++GWLIRYMHANGASF F +++ GL L WS IY G ++P W Q +S + +F + K G + VGNPTLN F+SLHYLLPF+I +VFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFAL+ LS+ +FY PN+LG+PDNYLEADPYSTPAHIVP
Sbjct: 9 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFGLVIQILSGAFLAMHYAGETHYAFSSVEHIMRDVENGWLIRYMHANGASF----FFIVVYAHIFRGLYYGSYMAPRHQLWWSGGVIYVLMMATAFIGYVLP------WGQ-MSFWGATVITSLFSIFPFIGKEVVMWLWGG-FTVGNPTLNRFFSLHYLLPFIIAGLVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALLSMLSVVIFYLPNSLGDPDNYLEADPYSTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: Q2TUA7_DICDH (Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID=Q2TUA7_DICDH) HSP 1 Score: 308 bits (788), Expect = 6.600e-101 Identity = 162/275 (58.91%), Postives = 192/275 (69.82%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
+++WVDSHIIDYPTAMNLNYNWS+GS AGFCL IQILSGAFLAMHY SETHYAF+S+EH+MRDV +GWLIRY+HANGASF F +++ GL +L WS A IY G ++P W Q +S + +F K G Y VGNPTLN F+SLHY+LPFLI +VFVHLGLLHKDGSNNPLG+KT+ AN+NFYPY YVKDLV FF L+ +S+F+FY+PN LG PDNY+EADPY TPAHIVP
Sbjct: 9 LVAWVDSHIIDYPTAMNLNYNWSYGSAAGFCLGIQILSGAFLAMHYVSETHYAFASIEHIMRDVDNGWLIRYLHANGASF----FFIVVYAHIFRGLYYGSFMEPRQSLWWSGAIIYVLMMATAFIGYVLP------WGQ-MSFWGVTVITNLFTVIPVIGKDIVMWIWGG-YTVGNPTLNRFFSLHYVLPFLIAGLVFVHLGLLHKDGSNNPLGVKTRLANVNFYPYFYVKDLVGFFVLLSVMSVFIFYYPNMLGHPDNYIEADPYGTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A8E8PEC1_9PHAE (Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEC1_9PHAE) HSP 1 Score: 297 bits (760), Expect = 5.080e-96 Identity = 157/275 (57.09%), Postives = 190/275 (69.09%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
I+SW+DSHIIDYPTAMNLNYNWSFG+ AGFCL+IQILSG+FLAMHY S+THYAFSS+EH+MRDVK GWLIRY+H+NGAS F +++ GL L WS IY G ++P W + +TS + S R+ ++ G + VGNPTLN FYSLHY LPFLI+ +VF HLGLLHK+GSNNPLG +T+ N++FYPY+Y KDLV+ F L+ LSI VFYFPN LG+PDNYLEADPY TPAHIVP
Sbjct: 9 IISWIDSHIIDYPTAMNLNYNWSFGAAAGFCLVIQILSGSFLAMHYVSDTHYAFSSIEHIMRDVKGGWLIRYIHSNGASL----FFIVVYAHIFRGLYFGSFMEPRQQLWWSGGVIYILMMATAFIGYVLPWGQMSFWGATV-ITSLFSILP-----SVGREVVMWIWGG--FTVGNPTLNRFYSLHYFLPFLISGLVFFHLGLLHKEGSNNPLGFRTRIGNLSFYPYLYAKDLVSLFILLSLLSIIVFYFPNTLGDPDNYLEADPYGTPAHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A7S6UA51_9STRA (Cytochrome b n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA51_9STRA) HSP 1 Score: 269 bits (687), Expect = 1.330e-85 Identity = 145/283 (51.24%), Postives = 172/283 (60.78%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILS----------------------W-----FMLIILGVCTTGLTLTWSPASIYGGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
IL+WVDSHIIDYPT MN+NYNWSFGS AGFCL IQILSG FLAMHY E H AFSS+EH+MRDV +GWL+RY+HANGASF W L+++ G L W S +G V F S G V + + VGNPTLN F+SLHYL+PF+I +VFVHL LLHKDGS NPLG + ++I FYPY YVKDL+ FF L+ SLS+FVF++PN+LG PDNY+ ADP TPAHIVP
Sbjct: 11 ILAWVDSHIIDYPTPMNINYNWSFGSAAGFCLGIQILSGVFLAMHYTPEIHLAFSSLEHIMRDVNNGWLVRYIHANGASFFFIVVYCHIFRGLYYGSYIEPRQELWCSGVIIFLLMMATAFMGYVLPWGQMSFWGATVITNLF-------SAIPVAGDAIVQWLWGG-------------FSVGNPTLNRFFSLHYLMPFVIAGLVFVHLALLHKDGSGNPLGANSSFSSIPFYPYFYVKDLLGFFLLLTSLSVFVFFWPNSLGHPDNYIPADPLVTPAHIVP 273
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: A0A4Y5T8W2_9PHAE (Cytochrome b n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T8W2_9PHAE) HSP 1 Score: 263 bits (673), Expect = 2.450e-83 Identity = 142/275 (51.64%), Postives = 184/275 (66.91%), Query Frame = 1
Query: 1 ILSWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGASFILSWFMLIILGVCTTGL----------TLTWSPASIY---------GGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSSDRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
IL+W+DSHIIDYPTA+NLNYNWSFGS AGFCL IQI++GA+L+M Y + AF ++E++MRD+K GWLIRY+HANGASF F + I GL L WS A I+ G ++P W Q +S + + ++ KR G + VGNPTL+ FYSLH++ PF++ +VF+HLGLLHKDGSNNPLGIKT+ +NINFYPY YVKDL++FF ++ LSIFVFY+PN L +P NY++ADP+ TP HIVP
Sbjct: 9 ILAWIDSHIIDYPTALNLNYNWSFGSAAGFCLGIQIITGAYLSMTYIGDIELAFVTIEYIMRDIKFGWLIRYIHANGASF----FFMAIYCHIFRGLYYGSYKEPRQPLWWSGAIIFLWSMATAFMGYILP------WGQ-MSFWAATVITQMLTIIPKIGKRILIWLWGG-WVVGNPTLHRFYSLHFIFPFVLVGLVFIHLGLLHKDGSNNPLGIKTRLSNINFYPYFYVKDLLSFFVMLFVLSIFVFYYPNFLLDPLNYIDADPFDTPPHIVP 271
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Match: D2Z248_HETAK (Cytochrome b n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z248_HETAK) HSP 1 Score: 241 bits (616), Expect = 6.420e-75 Identity = 132/263 (50.19%), Postives = 171/263 (65.02%), Query Frame = 1
Query: 7 SWVDSHIIDYPTAMNLNYNWSFGSTAGFCLLIQILSGAFLAMHYASETHYAFSSVEHMMRDVKSGWLIRYMHANGAS--FILSW---FMLIILGVCTTGLTLTWSPASIYGGLVPLFTF**WQQHLSVTSYHGVKRVFLYYSS----DRKRCCYVDMGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTKTANINFYPYIYVKDLVAFFALVLSLSIFVFYFPNALGEPDNYLEADPYSTPAHIVP 768
+++ SHII+YPT +NLNY WSFGS AG CL+IQI++G FLAMHY YAF+S+EH+MRDV +GWLIRY+HANGAS FI+ + F + G T L W+ + L+ F + S+ GV + +S+ + ++ G + V N TLN F+SLHYLLPFLI M VHL LLH++GSNNPLG++ KT I FYPY YVKDL++FF L+ S FVF+ PNA+G PDNY+ AD TPAHIVP
Sbjct: 11 AFISSHIIEYPTPLNLNYMWSFGSAAGICLVIQIITGIFLAMHYTPHVDYAFASIEHIMRDVNNGWLIRYLHANGASIFFIVVYCHIFRGLYYGSYTKPRGLLWASGVVIFILMMATAFMGYVLPWGQMSFWGVTVITNLFSAIPFVGKSIVEWLWGG--FSVDNATLNRFFSLHYLLPFLIAGMTIVHLALLHQNGSNNPLGVEAKTNKIPFYPYFYVKDLLSFFFLLWLFSFFVFFHPNAMGHPDNYIPADSLQTPAHIVP 271 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1183.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1183.22.1 >prot_A-nodosum_M_contig1183.22.1 ID=prot_A-nodosum_M_contig1183.22.1|Name=mRNA_A-nodosum_M_contig1183.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp MGRLYCVGNPTLNIFYSLHYLLPFLITCMVFVHLGLLHKDGSNNPLGIKTback to top mRNA from alignment at A-nodosum_M_contig1183:249240..250007+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1183.22.1 ID=mRNA_A-nodosum_M_contig1183.22.1|Name=mRNA_A-nodosum_M_contig1183.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at A-nodosum_M_contig1183:249240..250007+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1183:249240..250007+ >mRNA_A-nodosum_M_contig1183.22.1 ID=mRNA_A-nodosum_M_contig1183.22.1|Name=mRNA_A-nodosum_M_contig1183.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig1183:249240..250007+ (Ascophyllum nodosum dioecious)back to top |