mRNA_A-nodosum_M_contig1177.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1177.15.1
Unique NamemRNA_A-nodosum_M_contig1177.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: A0A6H5KWT8_9PHAE (Ribosomal_S7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 8.670e-135
Identity = 205/236 (86.86%), Postives = 217/236 (91.95%), Query Frame = 1 
Query:    1 MATELNPGGWEEGDAV--PEAMEETGWGGDAEEIDASLPVEEAVAVSEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            MATELNP GW+ G+ V   +A    GWG    E++A L VEE+  +S+V+LFNKW+FDDIEIRDISLEDYIAVKGKYAT+LPHTAGRYQKKRFRKATCPIVERLC +LMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATELNPDGWDGGEPVVADDAGAAEGWG--EPEVEAPLAVEES-GISDVQLFNKWSFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
[Close]
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: A0A835ZGP4_9STRA (Ribosomal protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA)

HSP 1 Score: 331 bits (848), Expect = 3.660e-113
Identity = 164/193 (84.97%), Postives = 184/193 (95.34%), Query Frame = 1 
Query:  124 VAVSEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            ++ SE+KLFNKW++DDIEI DISL DY+AV  K+ATFLPHTAGRYQKKRFRKA CP++ERL VSLMRKGRNSGKKL+AAR+V+ T+EIIHLLTD+NP+Q LV+AVIN+GPREDSTRVGSAGVVRRQAVDLSPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MSASEIKLFNKWSYDDIEIEDISLSDYLAVGTKHATFLPHTAGRYQKKRFRKAACPLIERLTVSLMRKGRNSGKKLLAARVVRSTMEIIHLLTDENPLQTLVNAVINAGPREDSTRVGSAGVVRRQAVDLSPFRRVNQAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKANR 193
[Close]
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: W7TXQ4_9STRA (Ribosomal protein S7, conserved site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXQ4_9STRA)

HSP 1 Score: 327 bits (837), Expect = 3.730e-111
Identity = 169/211 (80.09%), Postives = 189/211 (89.57%), Query Frame = 1 
Query:   91 EIDASLPVEEA-VAVS------EVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            EID ++P E A +AV+      ++KLF KW+  D+EI+D+SLEDYI V GK AT+LPHTAGRYQKKRFRKA CP+VERL  SLMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct:    5 EIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
[Close]
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: B8CC69_THAPS (RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8CC69_THAPS)

HSP 1 Score: 327 bits (837), Expect = 4.150e-111
Identity = 167/216 (77.31%), Postives = 186/216 (86.11%), Query Frame = 1 
Query:   97 DASLPVEEAVAV--------------SEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            D   P+EE V V              +EVKLF KW+FDDIEIRDISL DYIA KG +AT+LPHTAGRYQKKRFRKA+CPIVERL   LMRKGRNSGKKLMA RIV+HTLEIIHLLTDQNPVQV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:    3 DVEDPIEEPVEVEXXXXXEFVAVGGATEVKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTVAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 218
[Close]
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: D8TJL0_VOLCA (Component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Viridiplantae TaxID=33090 RepID=D8TJL0_VOLCA)

HSP 1 Score: 325 bits (832), Expect = 9.990e-111
Identity = 158/193 (81.87%), Postives = 180/193 (93.26%), Query Frame = 1 
Query:  124 VAVSEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            +A  +VKLF KW+F+DIE++DISLEDYIAVK KYA ++PHTAGRYQKKRFRKA CPIVERLC SLM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QVLVDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATPDVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
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BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: A0A7S3V821_9STRA (Hypothetical protein n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3V821_9STRA)

HSP 1 Score: 324 bits (831), Expect = 4.040e-110
Identity = 161/215 (74.88%), Postives = 189/215 (87.91%), Query Frame = 1 
Query:   58 MEETGWGGDAEEIDASLPVEEAVAVSEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            +EET +  + EE++           +E+KLF KW+FD+IE+RDISLEDYIA KG +AT+LPHTAGRYQ KRFRKA+CPIVERL   LM+KGRNSGKK+MA RIV+HTLEIIH+LTDQNP+Q++VDAVINSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:    9 VEETTYDEEVEEVEEEPEFVGDAGGAEIKLFGKWSFDEIEVRDISLEDYIACKGDHATYLPHTAGRYQMKRFRKASCPIVERLACCLMKKGRNSGKKIMATRIVQHTLEIIHILTDQNPIQIVVDAVINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 223
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BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: A0A6V2ER46_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ER46_9STRA)

HSP 1 Score: 322 bits (826), Expect = 3.300e-109
Identity = 161/196 (82.14%), Postives = 181/196 (92.35%), Query Frame = 1 
Query:  115 EEAVAVSEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            E A A  EVKLF KW+FD+IE+RDISL DYIA KG +AT+LPHTAGRYQKKRFRKA+CPIVERL   LMRKGRN+GKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   38 EVANAGPEVKLFGKWSFDEIEVRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNAGKKLMAVRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 233
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BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: A0A2K3DQA6_CHLRE (Ribosomal_S7 domain-containing protein n=9 Tax=CS clade TaxID=2812636 RepID=A0A2K3DQA6_CHLRE)

HSP 1 Score: 321 bits (822), Expect = 3.330e-109
Identity = 156/193 (80.83%), Postives = 179/193 (92.75%), Query Frame = 1 
Query:  124 VAVSEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            +A  +VKLF KW+F+DIE+ DISLEDYIAVK KYA ++PHTAGRYQK+RFRKA CPIVERLC SLM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QV+VDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MASPDVKLFGKWSFEDIEVTDISLEDYIAVKTKYAVYVPHTAGRYQKRRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVVVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
[Close]
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: A0A7S4N0H9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0H9_9STRA)

HSP 1 Score: 322 bits (825), Expect = 4.370e-109
Identity = 159/190 (83.68%), Postives = 177/190 (93.16%), Query Frame = 1 
Query:  133 SEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            +EVKLF KW+FDD+E+RDISL DYIA  G +A FLPHTAGRYQKKRFRKA+CPIVERL   LM+KGRNSGKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERVAK+NR
Sbjct:   42 TEVKLFGKWSFDDVEVRDISLVDYIACTGDHAVFLPHTAGRYQKKRFRKASCPIVERLACCLMKKGRNSGKKLMACRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVAKSNR 231
[Close]
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Match: F0XZC6_AURAN (Ribosomal_S7 domain-containing protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XZC6_AURAN)

HSP 1 Score: 320 bits (821), Expect = 5.070e-109
Identity = 157/190 (82.63%), Postives = 176/190 (92.63%), Query Frame = 1 
Query:  133 SEVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 702
            SE+KLF KWT+DD+E+ DISLEDYIAVKGK++ +LPHTAGRYQKKRFRKA CPI ERL  +LMRKGRN+GKKL A RIV+ TLEI+HLLTDQNPVQVLV A++ SGPREDSTRVGSAGVVRRQAVD+SPFRRVN ALYL+ TGARE++FRN+KTIAECLADE+INAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    6 SEIKLFGKWTYDDVEVNDISLEDYIAVKGKHSVYLPHTAGRYQKKRFRKALCPITERLVCALMRKGRNNGKKLKAVRIVQSTLEIVHLLTDQNPVQVLVQAILQSGPREDSTRVGSAGVVRRQAVDMSPFRRVNMALYLLCTGAREAAFRNVKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 195
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1177.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWT8_9PHAE8.670e-13586.86Ribosomal_S7 domain-containing protein n=2 Tax=Ect... [more]
A0A835ZGP4_9STRA3.660e-11384.97Ribosomal protein S7 domain-containing protein n=1... [more]
W7TXQ4_9STRA3.730e-11180.09Ribosomal protein S7, conserved site n=2 Tax=Monod... [more]
B8CC69_THAPS4.150e-11177.31RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID... [more]
D8TJL0_VOLCA9.990e-11181.87Component of cytosolic 80S ribosome and 40S small ... [more]
A0A7S3V821_9STRA4.040e-11074.88Hypothetical protein n=3 Tax=Bacillariophyta TaxID... [more]
A0A6V2ER46_9STRA3.300e-10982.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2K3DQA6_CHLRE3.330e-10980.83Ribosomal_S7 domain-containing protein n=9 Tax=CS ... [more]
A0A7S4N0H9_9STRA4.370e-10983.68Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0XZC6_AURAN5.070e-10982.63Ribosomal_S7 domain-containing protein n=2 Tax=Pel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1177contigA-nodosum_M_contig1177:187139..192151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1X8
Preferred nameRPS5
PFAMsRibosomal_S7
Model size705
Max annot lvl2759|Eukaryota
KEGG koko:K02989,ko:K18914
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030684,GO:0030686,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons5
Evalue2.02e-135
EggNOG OGsCOG0049@1|root,KOG3291@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S5/S7, eukaryotic/archaeal
Ec32 orthologEc-07_003740.1
EC1.18.1.6
DescriptionrRNA binding
Cds size705
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866591.415067-CDS-A-nodosum_M_contig1177:187138..1872961680866591.415067-CDS-A-nodosum_M_contig1177:187138..187296Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 187139..187296 +
1680866591.431847-CDS-A-nodosum_M_contig1177:190140..1902671680866591.431847-CDS-A-nodosum_M_contig1177:190140..190267Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 190141..190267 +
1680866591.4452567-CDS-A-nodosum_M_contig1177:190654..1907891680866591.4452567-CDS-A-nodosum_M_contig1177:190654..190789Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 190655..190789 +
1680866591.45747-CDS-A-nodosum_M_contig1177:191395..1915121680866591.45747-CDS-A-nodosum_M_contig1177:191395..191512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 191396..191512 +
1680866591.4723947-CDS-A-nodosum_M_contig1177:191983..1921511680866591.4723947-CDS-A-nodosum_M_contig1177:191983..192151Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 191984..192151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1177.15.1prot_A-nodosum_M_contig1177.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1177 187139..192151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1177.15.1

>prot_A-nodosum_M_contig1177.15.1 ID=prot_A-nodosum_M_contig1177.15.1|Name=mRNA_A-nodosum_M_contig1177.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=235bp
MATELNPGGWEEGDAVPEAMEETGWGGDAEEIDASLPVEEAVAVSEVKLF
NKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVE
RLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSG
PREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIA
ECLADEIINAARGSSNSYAIKKKDEIERVAKANR*
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mRNA from alignment at A-nodosum_M_contig1177:187139..192151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1177.15.1 ID=mRNA_A-nodosum_M_contig1177.15.1|Name=mRNA_A-nodosum_M_contig1177.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5013bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:187139..192151+ (Ascophyllum nodosum dioecious)
ATGGCGACCGAACTGAACCCTGGTGGATGGGAAGAGGGAGATGCTGTCCC
AGAAGCTATGGAAGAAACTGGATGGGGAGGAGACGCGGAAGAGATTGACG
CTTCGCTCCCCGTGGAGGAAGCTGTAGCGGTGTCCGAGGTGAAGCTCTTC
AATAAGTGGTGAGCAGCGAGGCGAGCTTGCGGGCAGCGAAGCAGGTCATG
GCTGACGAGATCATCCAGGTCTCAATTCTAATGTAGGGCGTCGAGATGCC
GTGCTGCCTGGGTTTTCTACGTGTTGTCTCACGCGAGTGTGTACAGTTTG
GTCTACGGCAGGCGGGAAGTACGGTCCCCCTTATTCCAAAGTCTAGCTTT
AGATTTTATACTATCTGAGTACACGTACAATTACTTAACATACTACCTAG
AAGGAGAAGGACTTGATAGAGAGAGATTGGAACGCCAGTCACCACACACG
CCAGGCAGCAGCGCGCACCCATCAATGAGCAAAACATCCAAACAACGAGC
AGTACTGCTGTTGGAGTTGATAACGACTTCACAACTTTGCGGATTCTGTG
CCCACCCTTTTCCCACTTGAACGGATTGCGTGGAACCTGGCCGCCAGCGC
CGCTGACGGCGTCCATGCACGACACCAATATACCATGTGTGATCATACAT
ACATAAATACATTTTTTAATATAAATAAATAGACGCCGCCGCGGAACTCG
GGACGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAG
CAGGCTGACGCGGGACGGGACGACTGAACCCGTCTTGCGAGATCAAATTC
TCAGGCACGCACGGGGACAGGGGAATGTTCATTTTCCCTTTTCAGCTGAC
CACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTGCTAATGT
GATGATACATACATACATCGTGTCCCTTTTCGAGCGAATCGGAATGTACT
ACTTTTTTAGAGCTACTGTACTACCGTAAGGGCTGATAGAGCACCACGCT
GTGACCGCCCGAATCGGTGTTGAGCTTTCTGTATACGTGCGATAAACTCA
GGTTGGCGATGTGGAGATGTCAGGAACACCTACACACTGGTGCTTTTCAC
CTACTAAGCACGGTCATGATTCCTACCATAGATTTTTACCTCCACAGACA
GCAGCAATCTACCAGGAGCAGCAGGATTTATTATCGACGCTACAAAAAAA
ATGTCCAGAATCCTTATACAAGCAATTAGGACGTATAAAAAAATGCAGTA
TTTACATTAAAAGAGAAGCCGAACTCTGGTTTTGCTAAATCTTTTAATCC
CCAATTTTTATCTAAAAATGATTAACATCATCTATAAATGTACTTTTAAT
CTGGGTCAAAAAGGAATCCACTGTTATTCAGGCTTGTCAAGCGGCTGGTG
TAAAAATTCCAAGGTTCTTACTTTTTCCAAGGGTGTACCGCTTGTGTCAC
CTTCCTCCCAGATCACACGCCCCAGCGATGAAATGAAAACCCGGCCAGGA
GAGTGCGTGATTTTAGCGGGTGCGTAGGTCGCTAACCACAAAACAAACCT
TTTTCTTTAAACAGAGCTACATCGTCCGAGTACATGTGTTACGTTTTTTT
GCATTGGGTCCCTCGAATCAAGGCGAGCTCACGTCTCGCCTTTCTTTGGA
GAATCAATCGTGTACGGCACGAACCCGACGGAAGTCTAAGGCGCTTTTTT
CCGGCCCCCCCAAAAGTCTGGGTAGGTAAGAGGGCCTGCTCCACTGGTGC
GGGTCCGCCTTATATTTGTTTCCCGGGAGTTTTGTTATGCTTCTTCTCAA
TCGTTTAAAAAAAGTCAACATTCACTTTCACTCACAGGCCGAATGAAAAA
TCCCTCCTTCCACCCCACACTAACTCCTTTCCTGCTGTATACCAGGTACT
AATGAAACACTACCAGTACTACATATTTATTGGACAGGAATGTGTACCTT
TTTCACCCGCGAGGTGGCGAAAAGGCGATGTAGTGGGGGTCGAAACACGT
TCCGTCGGCGTGACGAATGCTGTCTACTTGTATTAGTAATGCTCTATAGA
CCCTCACCTCCCCCCCGGTGTGAACACACACCAGCGAAGTTGTAGATGGT
GGGGAAACAGAACTTTGCCTGCCAACGTCGCCTGTCCCCCGGGCGAGATT
CACTGCTATCGTGGGGACTTGGCAAGTTACGACCAATGTTGGAGTTGTGT
TCGCCTCCCCGCTTCTGCAAAACAAAACCTGTGGGAAAATTCGCCCACCT
GCGGACAAACCTGGGGTGCATCGCTCTCTCCCGTGTTGTCCAGGGCGACC
GTTGATATTTAATTTTAGTCGCCATCATACGGGATTTTCTAATATAGTGC
TGTGTAGTACATACAGTACACGAATGTTATCAATGTGTTTGCTGAAAAAT
TAAGAATTAGAGCTCTGAACCCGGTACAATGTTCCCTCCTACACGATATA
CCCATACACTGTACGCGAAAAGTCCGCTCCGAAGAAAGCGCCAAAAGGAC
GCACACGACCCCACCCAACTTTTTTTTTTCTTCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCCTCTCTCTTTCCCTCCAGGCGCCAATTTCCC
AACTAAGTCGAAGATAGTACTCGAAAGGCCCCGCACGGCTGTTTTTAATA
TCAAAGTCAAGTAAAAAATTGGGGTGACTTGTTTCATGATGTCATCGCGG
AAAAGTCTCATGTATAAATTACGTTTTTCGTTTGGAAGTGGACACAAACT
CCGACGAAGTACTTTTTTACTTTAGACTGTTGCTATGTTCACACACACAT
GCACACACACGGGTGTTTTCTTCTTCTTTTTCTTGAGAGTGTTGCCCGGA
TCACAAACGAGCAGCACGATCTGTCTCCTGTAACCTATCTTCCTCTCTTT
TCTATGCGATTCAGATCCCGCAGCAAGCTCTTGAGGCAGGCCTGAAAAAA
CAAACTTATTTGGTCTGTGCTCGCGATCGCTTACCACGATATCATCACAC
AGGACATTTGACGACATCGAGATCCGCGACATCTCTCTTGAGGACTACAT
CGCCGTCAAGGGCAAGTACGCCACATTCTTGCCCCACACGGCCGGCCGAT
ACCAGAAGAAGCGCTTCCGCAAGGCCACGGTGCGATCACCGCCATCGAAT
CATCGCTTTGTTCCCACTGTCCTTTCGATTCGGTTCACGTCGCGTGTTTT
ATTTTTTTTGTGAAGGAATTTCTTGCGCAATTTTTAGCCATTGTAGTAAT
ATTAATATGGACCTAATTGTATGTTGGGACGTTGGCGCGCGATGGAGATG
TAACAAACAGAGCGCAAAGCGCGTGAATAAAACGTTAGAACACGTTATTC
GGTTCATATAAAATGTGATGAAACATGTTCGAGTCTTGCTTCATGCGCTA
TTTTTCCCCGCGTCGGGAAAAAAGTAATCGGTAATTTTAATGTGCTCTCC
TCGCTCGTCTGCGTAACTTTGCGCGGTATTTCGGCGTGGTGGATTCGGTC
GCGCGGACGACGCCAGTGCCCCATCGTGGAGCGCCTGTGCGTGTCCCTCA
TGCGGAAGGGCCGTAACAGCGGAAAGAAGCTCATGGCGGCACGGATTGTG
AAGCACACTCTGGAAATCATTCACCTTCTAACGGACCAGAACCCCGTCCA
GGTTGGTTTCCGCGTTATAACCAAAACATGCGTGCAACGCCAATCGAGAG
GGAGGGGCGAGGCGGGGTCGTCTTACGATAAAACCACTTGCCAAAAGTGG
CGAGCGATTCTGGTCTTTTGGCCAAAAGACACAAATAAAATGCTTCAAAG
ACTCTCTTATGGCTCGACAAGAACATTCAGAAACGTAACCTATGTGCCTA
GTATCAAACATTAAATGTGGTGAAAAAAAAATAGTGCAAGGACCACGCTC
AAACAAGCGCAACAGTAACAAGGGATGGCGCCCACGCCTTCTGGGTGCAG
GAAGTCGTGGTGTTCGAAGAGAAATTATTGCCGGATGGGACAGTGGGAGA
ACAGGGTGGACACACACGAATCTTTGTGGCGATATGTGTTATTAATACGA
GGTAGCCTTTTCCGGTCAAGAAGTTGGTACTGGCTCACTCCTTATAAGCA
GTCTACACCGTCCGCCATTCACTTGGTTCTCTTTTGAAGTAAATTTCTCA
CGATATTTTCACTCTCCCCCCCATCTCGTCAAGAGATCAACCCAGTCAAC
GGTCGTCCTCGTAGGTAATGACAATACAAGCCACCATCGCATGCCCTGAA
CTCGCAGGTGCTCGTGGACGCGGTGATCAACTCGGGCCCCCGGGAGGACT
CAACTCGCGTGGGATCTGCCGGTGTGGTACGGCGCCAGGCCGTCGACCTT
TCGCCCTTCCGGCGCGTGAACCAGGTATGGTATGTCATGTTTTGTTGTGT
TTGGCATCTTACGTGTTTTTAAACGGGCAGCATCGCGTCAGAGGGTGCCA
TTTTCATCCCAATTTTCCTCGCATTTGTTGTACTTGGAAAAAAAAGTGCA
GCATACGTGTTTCTGATAAAAGGGAGAGCGCCCTTGCTTGAAAAGAAAGC
AACCGTGACGGCACATGACAATCGTGCATCCTCTGCAGCTTTTCTCTCAT
CCTACGTATGTACACCTACCGAGACCCAAAGTCAATCACAGTATAGTAAT
ACGATCACGACTTGTTGTTTGCGGTCGATGCCTAAAATCCCCCCCCCCCC
GCCCTGCACTTGTACCTTTTCTTCGATGGCATCCTTCTTTGCGATATTCT
GAACTTCTTTCGCCCGTGCCGGCTCCTCCCTTCGTCATTCCCTCTCTCCA
TGCTTATCTTCCTTCCTCCATCGTTGTGGGTGTGGATGGAGGCAGGCTCT
GTACCTCATCACCACCGGCGCGCGCGAGTCTTCATTCCGCAACATCAAGA
CCATCGCCGAGTGCCTAGCGGACGAAATCATTAACGCTGCCCGTGGGTCG
TCCAACTCCTACGCCATCAAGAAAAAGGACGAGATCGAGCGTGTGGCCAA
GGCTAACCGGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1177:187139..192151+

>mRNA_A-nodosum_M_contig1177.15.1 ID=mRNA_A-nodosum_M_contig1177.15.1|Name=mRNA_A-nodosum_M_contig1177.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=705bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:187139..192151+ (Ascophyllum nodosum dioecious)
ATGGCGACCGAACTGAACCCTGGTGGATGGGAAGAGGGAGATGCTGTCCC
AGAAGCTATGGAAGAAACTGGATGGGGAGGAGACGCGGAAGAGATTGACG
CTTCGCTCCCCGTGGAGGAAGCTGTAGCGGTGTCCGAGGTGAAGCTCTTC
AATAAGTGGACATTTGACGACATCGAGATCCGCGACATCTCTCTTGAGGA
CTACATCGCCGTCAAGGGCAAGTACGCCACATTCTTGCCCCACACGGCCG
GCCGATACCAGAAGAAGCGCTTCCGCAAGGCCACGTGCCCCATCGTGGAG
CGCCTGTGCGTGTCCCTCATGCGGAAGGGCCGTAACAGCGGAAAGAAGCT
CATGGCGGCACGGATTGTGAAGCACACTCTGGAAATCATTCACCTTCTAA
CGGACCAGAACCCCGTCCAGGTGCTCGTGGACGCGGTGATCAACTCGGGC
CCCCGGGAGGACTCAACTCGCGTGGGATCTGCCGGTGTGGTACGGCGCCA
GGCCGTCGACCTTTCGCCCTTCCGGCGCGTGAACCAGGCTCTGTACCTCA
TCACCACCGGCGCGCGCGAGTCTTCATTCCGCAACATCAAGACCATCGCC
GAGTGCCTAGCGGACGAAATCATTAACGCTGCCCGTGGGTCGTCCAACTC
CTACGCCATCAAGAAAAAGGACGAGATCGAGCGTGTGGCCAAGGCTAACC
GGTAG
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