mRNA_A-nodosum_M_contig1175.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1175.2.1
Unique NamemRNA_A-nodosum_M_contig1175.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A6H5L3W0_9PHAE (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3W0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 9.540e-63
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:  139 FLTGWGLPRHETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPKD 447
            FL GWGLPRHE++LDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPA+QQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGP+D
Sbjct:   48 FLPGWGLPRHESVLDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPAEQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPED 150
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A835Z7X2_9STRA (Ubiquitin-related domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X2_9STRA)

HSP 1 Score: 156 bits (394), Expect = 7.500e-45
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:  160 PRHETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPK 444
            P+  + L + +RLRGGMQLFVKTLTGKTV+VDV+PGDSIETLKHKIQEKEGIP DQQRIIFGGKQL G +K L DF+LE+G+TLHLVLRLRGGP+
Sbjct:   45 PQQGSALSKTLRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGIPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGPR 139
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A7S2XYN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYN6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.500e-33
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  169 ETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
              ++DRV+ LRGGMQ+FVKTL GKTV+V+VEPGD I+TLK KI EKEG+P DQQR+IF GKQL G  + L+D+++E+G T+HLVLRLRGG
Sbjct:   49 RAMVDRVLGLRGGMQVFVKTLNGKTVSVEVEPGDDIDTLKKKIAEKEGVPVDQQRLIFAGKQLEG--QTLADYDIEDGGTVHLVLRLRGG 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A6G3MKB3_HENSL (Polyubiquitin-B (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MKB3_HENSL)

HSP 1 Score: 125 bits (315), Expect = 1.110e-32
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  169 ETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
            E+ L  V+RLRGGMQ+FVKTLTGKTVT+DVEPGDS+E +K KIQ+KEGIP DQQR+IF GKQL    + L+D+ +++ +TLHLVLRLRGG
Sbjct:   64 ESTLHLVLRLRGGMQIFVKTLTGKTVTLDVEPGDSVEDIKSKIQQKEGIPTDQQRLIFAGKQLEDG-RTLNDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A0C2JX55_THEKT (Polyubiquitin n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2JX55_THEKT)

HSP 1 Score: 125 bits (315), Expect = 2.160e-32
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  169 ETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
            E+ L  V+RLRGGMQ+FVKTLTGKT+T+DVEP DS+ET+K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   64 ESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPNDSVETVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A0G4HF80_9ALVE (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0G4HF80_9ALVE)

HSP 1 Score: 124 bits (310), Expect = 3.690e-32
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  169 ETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
            E+ L  V+RLRGGMQ+FVKTLTGKT+T+DVEP DSIE +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   64 ESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A485KBK1_9STRA (Aste57867_3872 protein n=9 Tax=Oomycota TaxID=4762 RepID=A0A485KBK1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.690e-32
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  169 ETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
            E+ L  V+RLRGGMQ+FVKTLTGKT+T+DVEP DSI+ +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   64 ESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDG-RSLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A7S2V0I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0I9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.010e-32
Identity = 59/84 (70.24%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:  187 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
            V+RLRGGMQ+FVKTL GKTV+V+VEPGD I+TLK KI EKEG+P DQQR+IF GKQL G  + L+D+++E+G T+HLVLRLRGG
Sbjct:   44 VLRLRGGMQVFVKTLNGKTVSVEVEPGDDIDTLKKKIAEKEGVPVDQQRLIFAGKQLEG--QTLADYDIEDGGTVHLVLRLRGG 125
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A7S3H4Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4Z7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.130e-32
Identity = 62/95 (65.26%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:  160 PRHETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPK 444
            P  ++ L + + +RGGMQ+FVKTLTGKT++V+VEP +SIE+LK KIQEKEGIP  +QRIIFGGKQL  A K LSD++++E +TLHLVLRLRGG K
Sbjct:   41 PSIKSSLGKTLEIRGGMQVFVKTLTGKTISVEVEPDESIESLKAKIQEKEGIPPGEQRIIFGGKQLD-ALKSLSDYDIDEDSTLHLVLRLRGGLK 134
[Close]
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Match: A0A7S1UFV6_9STRA (Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S1UFV6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.090e-32
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  169 ETILDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 438
            E+ L  V+RLRGGMQ+FVKTLTGKT+T+DVEP D+I+ +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   28 ESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 116
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3W0_9PHAE9.540e-6395.15Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A835Z7X2_9STRA7.500e-4577.89Ubiquitin-related domain-containing protein n=2 Ta... [more]
A0A7S2XYN6_9STRA3.500e-3366.67Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6G3MKB3_HENSL1.110e-3267.78Polyubiquitin-B (Trinotate prediction) (Fragment) ... [more]
A0A0C2JX55_THEKT2.160e-3267.78Polyubiquitin n=1 Tax=Thelohanellus kitauei TaxID=... [more]
A0A0G4HF80_9ALVE3.690e-3267.78Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
A0A485KBK1_9STRA3.690e-3266.67Aste57867_3872 protein n=9 Tax=Oomycota TaxID=4762... [more]
A0A7S2V0I9_9STRA4.010e-3270.24Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3H4Z7_9STRA4.130e-3265.26Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1UFV6_9STRA5.090e-3265.56Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1175contigA-nodosum_M_contig1175:19699..37745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIW2
Preferred nameUBB
PFAMsubiquitin
Model size706
Max annot lvl2759|Eukaryota
KEGG koko:K02927,ko:K02977,ko:K04551,ko:K08770
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG ModuleM00177,M00179
Hectar predicted targeting categorysignal peptide
GOsGO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000902,GO:0001666,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006605,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030705,GO:0031090,GO:0031098,GO:0031145,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034643,GO:0034645,GO:0034654,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0036477,GO:0042175,GO:0042176,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042391,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046794,GO:0046907,GO:0047497,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061136,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097458,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0198738,GO:1901214,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902525,GO:1902527,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903050,GO:1903311,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons3
Evalue8.71e-66
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Ec32 ortholog descriptionsimilar polyubiquitin
Ec32 orthologEc-20_001780.1
Descriptioncellular macromolecule catabolic process
Cds size486
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866584.4950566-UTR-A-nodosum_M_contig1175:19698..198881680866584.4950566-UTR-A-nodosum_M_contig1175:19698..19888Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 19699..19888 -
1680866585.5323396-UTR-A-nodosum_M_contig1175:37715..377451680866585.5323396-UTR-A-nodosum_M_contig1175:37715..37745Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 37716..37745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866584.7459106-CDS-A-nodosum_M_contig1175:19888..200951680866584.7459106-CDS-A-nodosum_M_contig1175:19888..20095Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 19889..20095 -
1680866585.5096445-CDS-A-nodosum_M_contig1175:20401..205241680866585.5096445-CDS-A-nodosum_M_contig1175:20401..20524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 20402..20524 -
1680866585.5201032-CDS-A-nodosum_M_contig1175:37559..377151680866585.5201032-CDS-A-nodosum_M_contig1175:37559..37715Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 37560..37715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1175.2.1prot_A-nodosum_M_contig1175.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1175 19889..37715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1175.2.1

>prot_A-nodosum_M_contig1175.2.1 ID=prot_A-nodosum_M_contig1175.2.1|Name=mRNA_A-nodosum_M_contig1175.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=162bp
MRTAYSLVVAALATFFLLGDTSKVMAPTSPTARPRWFLTGWGLPRHETIL
DRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQ
RIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPKDHALDASLSRCS
AWLSKACVNRA*
back to top

mRNA from alignment at A-nodosum_M_contig1175:19699..37745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1175.2.1 ID=mRNA_A-nodosum_M_contig1175.2.1|Name=mRNA_A-nodosum_M_contig1175.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=18047bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:19699..37745- (Ascophyllum nodosum dioecious)
CCACTCAAGGACCGTCGCTGGGGTGTGAGGATGAGGACTGCGTACTCGCT
GGTCGTCGCGGCTTTGGCCACATTTTTTTTGCTTGGGGATACTTCGAAAG
TCATGGCGCCGACGTCTCCAACCGCTCGACCACGATGGTTCTTGACAGGC
TGGGGTCTTCCTAGACATGAGACCATCCTCGACCGGGTATGTTGTTATGA
CACTTAGAGTGTCACCATATATTGACGCTCATCGCACTTGGGTGGATTTT
ACGCAACAGATTTGTCATTCGAGAGGGGCTGGAGAGGCTTTGCTGGGCGG
ATCACACTCCGTCCAGCATGAGCACTTATACGGTGGTACCGTATGTCCCG
GGGTGTAACGCTTGAAGTTTACCTTGCTTCCAGTTCAGCATGTAGGCGGA
CAGTCAACACTAACTTTAAAAGATTAGACACCAACGCATCCGAACCCTCT
GGGCATCCACCATCTAGTCTAGTCTATTCTAGTCTAGAGCAATTGCTGCG
AGGACAAAAATTCTTCATGGGATTTTACCTGCTTCAACAGCATAACATCA
GGGAGAAACTACCGTGAAACTGTCTGTAGACTCATATAAATCGCCATGCA
GGTACGCCAAAACAGAGGCGAAAACACACGATGGACCTGGATATACATAA
ATATTTTTCAAGTTTTGTTATACAGCACTGATATTATACTTCAGTATTGT
GTTTGGGATCGGGTTCATGTAATAACTAATTGTGAATCGAAGTCCAATGT
AAAACTTGCGGAGAGATCCACCGTCATCGCATGGTACCATTAATATCGGT
ACAGTACCTGCATTCACAAAAACTCTGAACGTTCACTTGTAAAGCTTAAT
GACCCTCCCGACTCCCGACCATCCACACGATACAGGTGTGAGTGTGAAAG
TTTGTAAAGGCATTTTGAACTGTATCATAATCATAAACGGGCCGACAACT
ATTACTGTATACGAAGTATACTGTTTTGTGTACTGCAAACACCGAAACCT
AATATTAATAACAATATAATAATCGAAATAATAGAGCGTCAACGCAGTCA
GGGGGGGACATTGTGAAAACCTTTACAGCAGGTGGGAACATTGACTGCGA
GGACAGAAAGTCTATGGGACCTAATCGGGTTCCCCCGACCCGACAACTAT
TACTGCATACGAAGTATACTGTTTTGTGTACTGCAAACACCGAAACCTAA
TATTAATAACAATATAATATAATATAAATAATAGAGCGTCAACGCAGTCA
GGGGGGGATATTGTCAAAACCTTTACAGCAGGTGGGAACATTGACTGCGA
GGACAGAAAGTCTTTATGTAATCTAATCAGGTTCCCCCGATTATAGCATA
GAGTCAACAACATAATATCGGGCAGAAAAAAGTACATTCAATCGCCATGC
AGATACCAGGTACACTCAAACAGAGGCGAAAGCACAAGATGGTCTGAATG
CACCTAGACCTTCTGAGCATCCCCCAGTCTGGGGGAAAAAATGTCAAAAC
GTTTAGGTGGGATCAATAGCTGAAAATACAAAACCTCTTCATGGCATTTA
AACGGTTTCCCGGATGGTAATAACATGGGGTCAACAGTATAATGTCGGGA
GAAACCCACCGTCATACTGTACACTTACATTAATCGCCATGCAGGGACAC
CGACAAAAGGGAAGACAAACCAATACATCATCAAACAATAAAGACAGATC
CAATACGATCATTGAAACGAGCACAGCAGAGGACCATGATGATGAGAATC
TTCATAATCCAAGTACACGACCCCGTTATTCACCTGGAAGTAGACGAAGA
GCAGTAGGCGATCACACGAGGAGGTAAGAGGCAAGCGGAAAGAACTGGGT
TCCTCGCTCCATTACTTTTCAGGGCTACGATACACAGATGCTCCTCATGC
ATGGACTTAGCTATGGTCCCGCGTTGACCAGAAACACAAAGGAAAGAGCA
TCTGTCTATTATACAACTCAATTCCAGTATTTTAGAATGTGTTTGAGATC
GGGTTCAAGTTGGGTCGATTGCAGAAAATACTTTTCAATACTTTCAGCAT
GCCCACTTCATGTATATACCACTACAAAATTAATAATGGGTGTCGGATAG
CAGAGGCACACATTAATTGGTCCATGGTGACCTGCCAAGGTGGCACCTGT
TTGGAACTACCTTGAGGTTTAGTGGCCCTGTGCAGGCGGACTCTCGGCAG
TGAACGCCATCGGTACGCAATTGCGTGAGCCGATAAACTCGGGACCGACC
CGAAGGGGTATGGTGGTGGTTTAAATAAATGGACGCCGCCGCGGAAATCG
GGAGAACTCCCGTGAGCAAAGCACCAGATTCAGCCTGAGTGTGGAGAATA
AGCAGGCTGACGCGGGACGGGACGGCCGAACCTGACTCGCGAGACCAATT
TCTCAGGCACGCACGGGGACAGGGGTATATTCATTTTCCCTGTTCAGCTG
ACGACGCTGTCAACCTTTCCCGGTTGATCCATACTCTGCTGTATGTGGGT
GACCATTGCTGAAAGAAAACTCTATTAAATACTGTACTGTAAACGATAGG
AGGGGGGTGAGGCGGGACGGGACGGCTGAACATGTCTTGCAAGGCCAAAT
GCTCAGGTGCGAGGAACGCACACACAAATATCATTAATCACCCCTTGGGA
GGATGGCTATGACCAAAGCAAGAAGCGTAGAATGACTACTATGCATAACA
TGATGACAGGCTCGGATTGCGCGGTCATGTTCAATTTCACAAAGAAGAAA
TGAGTACTATGTGTATGTATGTATGTATGGTCATGACGTATAGCAGAGTA
TGGATCAACCGGGTATGGTTGCCAATCCTGCTCGTGGTCAGCTGAATAGG
GAAAATGAATATTCCCATCTCCATACCCAGGCTGAATCTGGTGACAATGC
ATACATACAAAATAATATGTGATACCAGACATCGCCAGGAGAAGAGAAGC
AACGAGACTGGGAAATAGTTAACGCACACGGAAGGGCGAAGCAACACCCT
TTGACCTAGCCTGTACGGACGCGAGACCGACCGAGACCTGCGTAGCGCCT
GTAGATGTGTCGCGTGATTTTTTTTTTTTCCTTCGAACGAGCGGTGTCGG
GGGAGGGGGGGGGGTGTGCTGCCAAACTTTTTTCTTTTTGTTCTCTTTTC
CCTGTTCAGCAGACCACGAGCGGGATTGTCCACCGTGTAAAGTAGTTTTT
CGGGTTGGCAATCAATACGCTGCATGTGAGAAACAACAATTTGGGGGATG
CTCAGAAGGTCTAGGCGCGTTCAGATTTTTCTTTAAACAACATTCCGGTA
CGTAATACCGTACCAGATGATATCGTCATTATCGTCATGAAGCCTGACCC
TCCACGGCTGCCTCCCGGCCGAGGCGGAACCAAGCCCTGAGGAAGTGAAA
CGAGGGTAAGGGACCGCGAGGGACTGCAAGCGCTAGTGGGACGCAGCTCG
TGTGGCTTGATCAACTATTTAGCAGCGTACCCGATGGCGTTGACGGTGCA
ACTTGAGCTAAACCCACGCGCCAAACCGTTTGTACCAACGGTAAAGGCAA
ACAAACTGCTGCAGCACCGTCGACGGTCGACGAAAGCGGAAGGAAGGAGA
GGCGAGGCACCCGTGACTAACCAGACTCATTCTGGGGTTTGTAAGATGGG
CTAGCCGAACCCTCCTCGCGAGACCAAATACAAAGCCGCGTTGATTGGAC
TAACCCAAGGACTCCCTGAGCGACGTCGACTGTGCTGAAACCCTGATAGT
ACGGAGTTATAGATGCTATACGTTTGAGTGCATGATTGCGATCCGGGGAG
GGTATCGGATAGCTGGCGGCTGGCACTATACCAAACCATCTCGATCGAGT
GCCCTTCTCCTATCTTTTTCTGCGTCTGGCATGTGCTTTGTATTATTGTT
TCTTTCTTTTTGTCGTTTTTGATTTGTTTTTGTTTAGTTCTCATACTTTC
GTTGGAGCTTTGTAGATGTTCCTCTCATCCTTTCCTGTCCAGCAGACCAC
GTACACCTACCGGATTGGCAGCCACGTACTTGTATATTACTGGGTATGGT
TGAGGCCCGATCGGTTAATGTGAAGAACACAACATACCATGTAGAGTTTC
TGTCCTTACAGCCAATGTTCCCACCTAAACCTTTTCTTAAACATTAACAT
GCACATACTGTGTCTTGTATACATACTACCACAGGTACAGTAATATTATT
TTTTCTTCCGGGTGGCGTTTTTCCACCTTGTGACCACGGGCTGGATATGT
CATCAGCTTATGTGAGAATTTAATCAATAAAAAATGAATCCTATTTTACA
GTATTTTACTGCTGTAATATGAGAAATTCATTCGCAGGCTCTTCGTTTCT
TTATTATGCTTGGTATAATCGAGTTTTGTTATTCTGACTCTTAAAATAGA
TATTATTAATAGCATAATACTACTGTACGTATTACTCGGACGAACAATTC
TTTAAAATACGTACCGGTAGCCTTTTAGTCACAGTTTCGCACAAGGCACG
TGGCAGTGGGCCGGGCAAACGATTTAGGTCCTCGAAGCCGTTCAGCAGTG
CCTGAATTTCGAGTTCTGTTCTTTGCTTTGACAGATATGACGTGCTTCCA
CAGGCTACAAGTATTTATGTAGCAGACTCCATCAACCGATATGGTTGTTA
ATCCTGCTGGAGGTCAGCTAAAAAGGGAAGATGAAATTTTCCTAGTCCTC
GTCCACGCCTGAGAATTGGTCTCGCGAGATGGGTTTGGCAGTCCCGTCCC
ACGTCACAGCAGTAGCAGCGTTTGAGTTTACCCACCGACAAGTCGTAACT
GCATAGCGGTGCGTCCTAGACTGTAGCATCTGTAATCATGTCGTACCAAC
ACTGTAGGGAGCGCCCGTTACTCAAGATACATTGAGGACTACTGGTCCAG
CTTCGAGGGACTCTTGGTCGTGAATGCCAGCCGTACAGTACAGTACAGTA
GGCAATGCGTGACCTTACAAACTCGGGATTGACTTAATAGTCGGTTGTCA
GTCTAGATTGACGCCTTAGTAGCGAAAAGCTAAATAAAACAGAGGAGCCC
GTGTTTGAGCACCAAGTTCAGCCTTCGTGCGGAGAATAAGTGGGCTGGCG
CGGGACGGGACGGCCGAACCCCGTCTCCCGGGACTAAAGGCTCAGGCGCG
AACTCGGGACAGGAAACATTTTCGTTTTCCCGGATCAGCTGAACCAACGA
TACAGTAGATGTATGTATGCATTGCCATTAATATAGCAAAGATTAAATAT
CAACTGGATAAGGCGGCCGATCCTGCTGGTGGTCAGCTGGACAGAAAAAA
TTAGTGTTTCCCGGTCCCCGTTCCCGTCTTAGAATTTGGTCTCGCGAGAC
GGGTTCGGCCGTCCCGTCCCGAGTCAGCCTGCTCATTCTCCACACTCAGG
CTGAATCTGGCTGAATCTAGTGCTTACTCACGAGATTCCTCCCGATTTCC
GCGACGGCGTCCATTTACTTATGACACCATCGCGGGTCACTCCCGAGTAC
AGATGCGGCCACCACTTAAGAAACTGGCAGTTAAGAAATTCAGCCTCAAA
CTTTTTGAAAAATAAGAAATTGACCATAAGAACAGGTGCTCAGTTCCGAG
GAGTCAGCCTTTTTATATTTTCCCTCGCCTTTTAAAAAATATACAGTAAG
AACTTGGCGATAAGAACAGGTGCTGGGTTTGGGGTGCCAGTAAGCCTCGA
GCCTCACGCCAAATAAGAGTTTCGTCAGTGGTGGCCGCATCTGTATATGG
GGCACGCAAGTGCGTACCGATGGCGTTCACTGCCGAGAGTCTCCCGGCAC
AGGGTCAGTATTACTGAAGGTAGTTCCAATAACGGGTGCTGCCTTGGCAG
GTCACGATGGACCAATTAATGTGCGCCTGTCTTTTCCCACACCCACTAAA
GCATTGCTGGCGAACCATAATTCGCTGCCTTGATTTACCTCCACGTGGGG
CTTCTTTGCTCATGAACGGGTTTGACCTGACTGCTTGCCTCAATCTAAAC
CTACTATTGTTTTTATCCCGTATCTGCTCAGTGGTAGCATCAGGGGCCAT
CCGTGTTGCCCGACCACCCTCACACCCTCAAACCTGGGTGTAAGGGGGGT
GTTTGGCCTGCTTGGTGAGAAACCCGACAAAGAGCTCCCCGGCATAGTAG
AGGCGCGTGGAGATAGCGTCTAGGACAGAGGGTACTATCTTGCATGATGT
GCGTGGTTAATTTATTTTGCCCTTCCTTGTCACAGCTCCGGGGTGTTGAG
TGGGGATGGCCTGGTCGGCGGGAACCCGACGATGAACACTCCCTGGCTTC
GTAGGGGAGGGGGGATAGCTCCTTCTTCAAGTTTAGTTTTACTTGTATTG
GTACTTCTATCTATTAATTGTATATTTTGTTTGTGACACAGCTTCTGAGT
TGGAGCGATGGGCTCTACTTCCTTTTTGGGGTTTCCCTGCCCTAACCTGC
TTCTTGTTTTTCTGAACTTGTTATTTTTAGGAACCTGTTACATATTTTTC
CGCAAGTGTCGACACTTTCTCTCAGGTCTTTTTTTTTCTGTACCTTATTT
TGGGTTAGCTTGTGACGACGGAAATTCGTTTCTTTGCCTTGAAGAGTAAG
AAAGAGAAGGTACTGGATGAAGGTCAGAACGGTTTCTAATGTTAAGACAA
CAACAACTATTATTATTTAATAGTACGAAGTAGGTATGTTGAAAGTATCG
GATGTATGCGGGGGTGATGCATACCCTGCTACTGTGTACGTTGTATGTGA
TGACTCAGTCCTATCAAAAGTGAACATGGGAAAAGATAAGCGCACAACAA
TTTGTCCCTCGTGATATCTGAAAAGACAACAACCGTTGCTCGAACTACCT
TGAGGAGTACTGGCCCTGCGCCGGCGAACTCTCGGTAGTGAACGCCATCG
TTACGCAAATGCGTGATCCGAGATTGTCGTTTTTGTTGATTCACACATTC
AGCGTATTGTCCTCACAACTGAAGAAACTAGGGTGACACAACAAGTCAGT
ATACTCGGAGACTGACCCGCGATGGCGGCTGACGATAAAAATAAATGGAC
GCCGTCGTGGAAAGCGGGAGTAATCCCGCAAGGAAGCATCAGATTCAGCC
TGAGTGTGAAGAATGAGCAAGCTGACTCGGGACGGGACGGCCGAACCCGT
CTCGCGAGACCCAAATTCTCAAGCGCGAACGGGGACAGGGAAATATTCAT
TTTCTATGTTCAGCTGACCACGAGCAGGATTGCCAACCTTACCCGATTGA
TCCATACTCTTGCCATCAATGATGACCAAACATACTATTGCTATACATAG
GATACATGGATAAGACACATACACGGTGGAGCGAGGTCAGCGGTTGTGTC
CACGTCCTTCAACGACACCTGCAGCGTATTGTATGTCATTCAACTAGTGC
AGCCTCCAATATAGTTCAGCGACTTGCTACTCCTCTAGCGACTATGACCA
ATGATAGTAATAGCTCGATGCTACTGGACCTGTTTCGTGTTTTACAGCAC
TAATGATTGTAGAGCGGCTGCTCCACTAGGACAGTTCTTTGTGATTTTCT
CGGAATTCGCGACCGCCGCTTTCCCCTTCCCCCAAACTCTCGGAATCAAC
AATCACATCATCAACAGTCAAACTCAAACCAGTAGAAGATTGGTGGGTGA
AACGGCAGTTGCAGTGCCTGTTCGACATCGCTGTCGTACGTAAAGTTCCA
TGCAAATATAGTAATTATAATACTGCAGCATTAGAGCTACAGCACCGTAC
CCCACTGGTTCCAAGCCCCGGTCCTCGTCCACCTCCAATAAAAGGTTAAG
TTGTTCAAAGGTTGTGTTTCAGGATGTATGTATGTATGTATGGTCATCAC
ATATAGCAGAGTATGGACCAACCGGGTAAGGTTGCCAATCCTGCTCGTGG
TCAGCTGAGCAGGGAAAATGAACATTCCCCTGTCCCCGTGCGTGCCTGAG
AATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGC
TCATTTCCATACTCAGGCTGATTCTGGTGCTTACTTACGGGATTCCTCCC
GAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCATCGGGTCA
GTCCCGAGTTATCGGGTCTCGCCATTACGTACCGATGGCGTTCACTGCCG
AGAGTCCGCCGGTACAGGGCCAGTAAACCTTAAGGTAGTTCCGAACGGAT
GCTGCCTTGGCAGGTCACCATGGACCAATCAATATTCGCCTCTCTTTCCC
ACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGTACCGGCTAGGATC
AAAGGTTATTAAAAGGTAGGGGGGGGGATTGGTAACCTAATACGAGCAAT
ACTGATGTTATACTTTAAAAATATATAATATTGATGCAATACTTTAATCG
GCAGACAGTGAGAGAGTGAGATACTAATAATACTGTATTAAATAGCATAC
ACTAATAATTTTAAATAGTCACAGTCCAACGTGTCAGACAGGTGGAGCAA
CTATGATAATTCACAAAATTGTAGCATACGCCTTACTCCTGTTTTTTTTG
TAGATACTACCGTATAGTATAGATCAGTTTATTTTGGCCTCTTGTCATCT
TGAGGCCTTCTTTCACATCAATGACTTCTTCTTTCACATCAATGACTTGT
CGATTTCCTTCATCAAAACTAGAATGAAGCTTATAGTCTATATACTACAG
TATTTGAAGATCAGCTACGTTCCTAAACTTTATCCTTTTTTATGACTAGA
CTATATTACTACTACTGTAGTCCTGACTCTGGTGTTCCTTGTGTATGTTT
TCGTGTCCCTTCATTAGTACGGTGCGTTTCTCCCCGATATTATACTGTAT
TATACTGATGACCCGATGCGACAAACCTCTCTGACCCTAGTTAATTTCTC
CTATGTCGCCTCCCAACAATTTATATCAATAACAAAGAACCTCACCTGTA
TAGTAATATTAATTTAATTTTACTTTAATTTTTCTCTAAGATCTTGTAAG
ACCATATTACTACACTGTAGTCCAGAACTCTTAGATTAAAAGGATTTTGG
TTTTGGTGTCCCTGCATGGAGATTAATGTAAGTGTACAGTATAACGGAGG
GCTTCTCCCCGATATTATACTGTCGACCCGATGTCATTACATCGGGGAAC
CCTTTTGATACCATGAAGAGGTTTTGTCTCTACAGCCAATGTTCCCTCCT
AAACCTTTAGACACTCTTCCACTTGAGGTGGATGCTCAGAAGGTTTAGAT
GCGTTCAGATTTTTCCTAAACATTGGGGAACCTATTTAATACCATGAAGA
GCTTTTGTCCCTACAGCCAATGTTCCCACCTAAATATTTTGACATTCCCC
CCAGGGTGAATGCTCAAGAGGTTTATAGGCGTTCGTATTTTTCTTTTATT
GCAGTATCGGCTATCGTGAGGGCACGGAAAAGTTTGGAAACGCTTTTTTT
TCAGGCTTAAATGAAGACAATGGAAACGACACCAACTCAGCTCAAAACGC
TTCAAGAGCTACTTGTACTCTGTTTCTGTACTGTACATATTTTTCTGCCC
AAAGTCGTCGAAATAGAAACGGTATACTGTCAATAGACTATGTCGTTAGC
TTTATATTTATAGCGGTTGCGGGAAGGAGAGAAGGAAACCGTCCGACGCT
TCAAATTGTAGCTGAGGGGGATCTATATCACACAGAAGCATTTATTTTTA
GCAAAACGAATTTGTCCAAGTCTTGAAACCAAGATTCTTCACGTATTTCG
TGTACTGTATTCAGGTTAAGAGCAAGCCACCCCAGCCCCCACCCACCATC
TTCTGAATCACAACGTCAATTTGCATCGTCCAAGGGAGATTTTGTACTGT
ACGGTTACTGATTTGTCTGAGGTAGGGCTAAACCCGATACATCCGATTTA
TTCCTAAAACGAGATGCGCAGCCATCAGCACAAGAGCTTCCGCAGAACAT
GAACCGGAAACCTTTCGGGGGCGTCAAAATTTCTTGGTTTTAGTGTAGAC
GGAGAAGCAAGACTTATGTGGGTCACATGTACGTATATGATATAGAGCTA
TGTGATAAGGCCCTGAACTGAGGGAAGGGATATATCCAAGTCTAACCCGC
GCATTTATTTGAGCAAAGCGGATTTGTCCTAGGCTGAGTTTCACCGCCGT
CTTATCTTTTATTGCCAATTAGGCGTTTGGAATCTCTCTCATCGGGTGGT
TATTTTTTCAATTCTAAGAAGATACGTAGTTTAATGCCGTAGGAAAGACA
AATAATAAATATCTATATATTAATAGGAGTCAATGTGATATCTTTTGGGA
AATGCGGAGACTTTAACTAGCAAGAAGCTGTTTTGCATTTACATGCGTGT
TATTATTTATATTTATCTATTCAATAGCCTGCCTATGTATCATCACTAAG
GATCTTCCCATCTCTCCCCGCTTCTCGCCTACGTTTTTTTTTATGACATG
TCTAGCACTTGAAAAGGCTACAGTCAGCACTACACCTCCGTCAACCATTG
GTCAAAAATTGCCTTCTCACTTTCTTCTACCCTTTCCCACGACGGAAACC
AGAACACGAAGTTGTGCACCTGGTAGTGTGTGTGTGTGTGTGTGTTTTCT
TCCCGTTCATTCTGGACATCAAGTTTGTTGGACGTACCAGCCGGGGTCAC
ACAGGAGGAAGGTCACACAGGAGGAAGGTCACACAGGTTTTCTCATCCAC
CTTCCTTCTGCGGTGCGTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCC
ATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTACCGATTT
TAATCGTTCTTCACCCGTTGGGCATTTTTATTTTAGTTTTTTAGTTTTTT
TAGTGAGAAAAATCCCGTTTGCCGGGATCAAACTCACGTCCCAACCTGTG
TCAGAGGGTTACGAGGTACCTCTGAGCTACCGGGGCGACCGGCAACAGTA
CTTACTATTAATACCTTATACTACTGTATAGTAGAGAAAAATATATACAG
TATACGGTAAAGATTCGAGTTCTGACAAAAATCCGCATCGAAATGTGATG
CTATCACTACATGGAGAACTGGTTGCCCCACTGGTGTAGTGGTAACCTCG
TACCTCGCACATAATGACTATTATAAAAAAGTGGTAATAGAGCGGATTCG
TGAGTTCGATTCTTTGATTATGGCTTCCGTGGAAGAAAGGGAGAGAACGT
GAGTATCTTTATGAGAGACAGAAACGACAGTAAAAAACAAAAAATGAAGT
TTCTGTGGTGAAATTTTTGTAAACGCCGCGCTATGGGCCCCAAAAACACG
GAAATTCCACCATACAGAAATAATAGCGAACTTCTGTGGGAGAAGACTGT
TTTCCTTTGCCAACCTACAGAAATTAGGCTAAATTCTGTAGGTGGCCTGA
AAAGTTTATTCCGCCACAAAAACGAATAATGCCATCCCAAGCACGATCGG
GAGGTCGGTGTAGCATCCCTCCTATCAAAGATCGGTAAAGAAGAGAAGTG
GCTCGCGAGTGCGATAGCCGCCGGACGATGGGTGCCGGAGCAGCAGTAGT
TGTGCGATGGTCGCCGGAGCAGCAGATTTGGAGGAAATTTATAAAAGCTG
TTGAGGTGATGGGCCCGGACAAGCTGATCGCCGGCAGCGGGAGCGGTTAG
ATGGGTGGCGTCGGAGATCAAGCAGAGACGGGCTGTGTACAAGCGTCGGA
GCTGTAAGGAGTCGGTATTCGGTAAGATGCTCACCATCGAAACGATGTCG
CTCTGCGCACTCTATTTGCGATACACTGGTAATTAAGTACTAAACTACCC
TGTCTCGCGAGACCAAATTCTCAGGCGCAAATGAGGAGAGGGAAAGAGGG
AAATATTAATTTTCCCTGTTCAGTTGACCACGTGCAGGACTGGCAACCTT
ACCCGGTTGATCCTCACTCTGCTATGTGTACATACTTGCACCTCTTTTTG
TGCGGCGTGATGGGTGGCAGAAGACGCCGGGGTCGACCCGGTATACTCCC
CGCTATTTTTGTTGTTTTTCTTCATCCCATAAAGGGCCACCTACAACTTT
CCCATACGGTAGTAGTTAATAAACCTTGCAACAAGAAAATGAGAACATTG
ACTTTTGAGGTTTTGCAGCTCGAACGACCAACCACGCATGTAGAGAACAT
ATTCGCTGTGGGTCTCGCGATGATACCAAATCCCTCGGCGTCTTATGTTT
TGGAAGGCAAGCTCGTAGCGAACCTGGGTCAGCCGTATCGCGTGTAACAG
CTTCGGTTGTGATTCGTGTGGAGGTGCAATAATTCTGATTTTTCTTTAAA
ATATTATCACAGACGAGTAACTCGAAGGTGGCCAAAATTGGAAACGAACA
AAGTAAAATATGGAACGCCCTCTTGAAAAGTTTCAAAAGGTCTTCGGTTC
TTCCTTTTCGGGTTGGAAATATATAGGCAGCGGAAAAGTAAAGGTTCGAG
CAGGGAGGAAAAAACCATAAATTTTAGAATTCCCAAATCGTAAGAGAAAA
AAAAACTGTGCAAAACCTCAAAGGTTCCAACATTTTTGGAAATAAGTGTA
CAGGATAAGTAAAGTAAAGGTTCAAGCAGAGGGGGGGGGGGGAATTTCAT
TTTTATAATTCCCAAAATGCAAGAAACGAAAAAAAAACTGTGCAAACCCT
CAAAAGTTCCAACATTTTTGGAGATCTTTCTACAGTATAAGTTAAGGTTC
GAGCAGGGGGCGGGGCAAAACCTAATTTTTAGAATTCCCAAAACGCAAGA
GGAGGGAAAAAAACTGTGCAAACCCTGAAAAGGTTCCAACATTTTTGGAA
ATCAGTTTACAGCATAAGTAAAGGTTCGAGCAGGGAAGGGGGGAAAACAT
AAATTTTTAGAAATCCCAAAGTGCAAGAAGAGACAAAAAACTGTGCAAAT
CCTCAAAGATTCCAACATTTTCGGAAATCAGTATACAGTACCAGGTATAA
GATAAGGTTCGAGCAGGGGAGGGAAAACACAATTTCTAGAATTCCCAAAA
CTCAAGAAGAGAAAAAACTGTTTCCTCTAAGGTTCCAACATTTTTGGAAA
TCAATATACAGAATAATAAGGCCGTTTCTTACGAGACAATTTTTCCAAGA
AATTTTGGGGTTGGAGGGGTCAAAATTTTACTCGAAAAAAATCGCCAGGT
GCACAATCTGAAGATCTCGGACCGTCTCTTACGGATCCCAGAGTTTTTTT
CAAGAAAATATTCTTGGTTTTATTTTTGATGCAGCGTATTTCGTAGTGCG
TGGGGAGGGGATGGGGTGGGGTGGGAAGACGCTGATGGAAGAGTAGGTGA
CGGATGACCGACGATTCTTGTCGCACGCATGTTTGGAACCCAAAGTAGAG
AGAGACCAAGACGGTCTACACCTCATAATACCTTACAGAAATAAAACCTC
TCTGGGGCTCGTCTTTTCGCCGACCGCTAGGCTGGACTCTCAGCAACTCC
TTCAGTTTCGCCAATTTATTTTTAGTGGAAAAAAGACAGAGGTGGGAAAA
ATAGAGAGAGAGAGCGATAAGTGCAGCAAGCATGCTGCTGCTGCGTGTGC
GAGAAAATATGTACGACAGTAGCAGCAGCGCAGTTTGGGGTCTACGCTGT
GTATGTGTGCGCCACACAGCATTCATTGATGATGCATAGTGGACAGTGTG
TAGGAGCGAGCGAGCGACGTGAGCAGACCAAGTTTGTGTAGCAACTGAAC
AGCGCAAATTTGATGAGCTGCTGCTACTCGCCGTTTGAGCTACTACTGCT
TGGTACGTGGCCATCTGCTTGCTACCAGCGCGTGGACGTTCTCTCGCAGC
TATTAGACAGCTACTCTGCGTTTGAGCTACTGCTTGGTACGTGGCCATAT
GCTTCCTACCACAGCGTGCGTGGGGACGTTCTCTCGCAGCTACTAGACCA
ACTACTCTGCGTTTGAGCTACTGCTTGGTACGTGGCCATCTGCTTACTAC
CAGCGCGTGGACGTTCTCTCGCAGCTATTTATTACTTCGTATAAGACAGC
TCCTTGCATGTCGGGTTCCGGAATTATCAATCATCCCCTACGTGACGAGC
CCGGACTGAAAACAAAAAAAGTCAATCATCATTCCAGCGAGTACGGCAGT
TCTGCCACGCACGTTCGTCAAGGCTCTTGGGGCAACGTTTGTGTGACTCG
ATGCATGTGTGAGTACAGCAGAGAACACAGTCGTGTGTACGTACAGCAGT
AGGCATCATCCAGTACTGGGAAGGGGTACGCCTCATCTTGTACTGATTTC
AGTTCTATTATCAAGTTATCCAAAAATTTCCTGTCTCCAGGAAATTTTGG
GCTCGAAAATTTCCTCGGCTGGGAGTATTCGAGCTTTTTTTTCCTGAGGA
AATTTTGGGCGAGGAAACATTTCGGGAACGTCTTTTTTTCCGAAGAAATT
TTTGACCCCTCCAACCCAAAAAATTCTTGGAAAAAAATCCTCGTAAGAAA
CGGCCCTAGTAAAGGTTCGAGCAGGGGAAGAGAAAAACACAATTTTTAGA
ATTCCCAAAACGCAAGAGGAGAAAAAAACTGTGCAAACCCTTGAAGGTTT
CACCATTTTTTGAAATCAGTTTGATATACAGTGTAAGTAAAGGTTCGAGC
AGGGGAGAGGGGGGAAAACATAATTTTTAGAATTCCCAAAACGCATAAGG
AGAAAAAAAAACTTTGCAAACCCTTACAGGTTTCAACATTTTTGGAAATC
AGTATACGGTGTAAGTAAAGGTTCGAGCAGGGGAGGGGGGAAAGCATAAT
TTTTAGAATTCCCAAAACGCAAGAGAGAAAAAAAACTGTGCAAACCCTGA
AGGGTTCCAACATTTTTGGAAATCAGTATACAGTGTAAGTAAAGGTTCGG
GCAGGGGGGGGGGGGAAACATAATTTTTAGAATTCCCAAAACGGAAGGAG
AAAAAAAATGTGCAAAACCTTAAAGGTTCCACCATTTTTGGAAATCAGTA
CAGGTATACAGTGTAAGTAAAGGTTCGAGCAGGGAAGGGGAAAAATATCA
TTTTTAGAATTCCCAAAACGCAAGAGGAGAAAAAAAAACTTTGCAAACCC
TTACAGGTTCCAACATTTTTGGAAATCAGTAGTAGTGTAAGTAAAGGTTC
GAGAAGGGGAAGGGAAAAACATAATTTTTAGAATTCCCAAAACGTACGAG
GAGAAAATAAACTGTGCAAATCCTTCAAGGTTCCAACATTTTTGGAAATC
ATTATACAGTATATATTGGATCCTGTGTATTATATAGCGAGGCGGCGGGT
GACCCGCTGCCCGACATTGACATTGGCGGGTGGGTGGGTGTCTCTTATTC
CTTATGCTGTAGCTGCCCGAAAGAGTTGATAATGTCGTAAGCCTTAATAT
TAATAGTTACGTCCGGTAGCATAATTGGAAGCTGAGCACGATAACGTCCA
AATTCCCATTTTTTATTTTTTTTTCTCGATTTTTTGGTGGTAGACCGTAG
ACTACAATCGTAGTCCTCGAAGAGAGAATGGACAGCACGCCAGCCTCAAC
AGCTCATTTAATACTGTATTATGTATTTTGTGTCCGATGAATGAGGTACA
CGCGTCATTTTTTTTAATGTTTAATGTTGGAAAACCAGCAGCAGCGCCAC
CAAGGCATATATATTTCTATCACATTAATACCAGGCATCAATTAACTTCA
CAAGCTGCTCTCTGTAGATATATTCCTGTGGTTATGAGTACCGGTTCTAC
CAATTAACAAATACCTGGTGGCAATTATACTAGTACATAGTTAAATTTCT
TTAGAAGAGGTGAGCACCGAGAGGTATGAGGCATGAGGCACGCTATCAAA
TAGATTCTTTAGAGGAAAAAAAAAAGCCCAGGCGAGGCGGTCGATGACGA
CCACTTGCTGGTCGTTCTCGCTCTCCAACTCTTCTTCACTACGAATTGAA
TTGCTGTACCCCGTAAGGTTGTGTGGGCATACGTTCAACAAATTGGTAAA
ATATAGTATGGGTGCTTGAAACGTTTACTTTTTTCGAGTGGGTTCAATTG
TTTTCGATTAAAAAAAAAAAGGTCCTACACACTCAAGAAACAATGAAAAC
CAAGGTGAGATAGAAACACATTTTTTCTGAGACAAAAATCATGGCCGCCC
TGAGTGTCATTTAGGTCACTATCGTTTCACTAAAATAGCCATCTCACTTG
CGACAGAGGAGAATTTTCAACCTCTCTTCGAGAATGCACAGAAAGTCTAG
AGACAAACAACGCCTGGGAATATTTGTGCCCCTTGCCAGGCCTAAATGGC
GGAACTCTCCTATAATGCAACGGTGGTGCATTCCCAAGCACGTGGACTAG
AGTAGATCCTGTACGAGAGCAGTGAAGCAGCTCAAGATGAGCGTACCACT
ACCGTTTGGGCAAGCAGTATTATACTTACAGATGTTCGAAGGGGCGTCGC
AATACACAGGCGGACGCAGTATTATCTCAGTCGAAGTCGAACTGTTTTGC
TTGTTGTATCCTCGGTACCAGTTATTTCCTGACGTATTCTATTGGAGCTT
TACCACTTTACTCTAAATAGTATAACATCGAGCGTATAGTTTTGGTGGCT
ATGTGTATAACACTGTACTCTAGTTTTACATCGGGCGCATAAAGTTTGGT
GGCTTATGTCTAAAACAACCTGTGATTGGTCCGCGCTATGTAAAAACGGC
TTCTGATTTGCCCGCGCTATGTCTTTTCTGCCCCGCAGCCTAAAACACTT
GCCTGAAGCTCCCGGTATTAATTAATACCAGTGGCGATCAATACAAGAAG
TCATGATATCACGCGAACGACCATTTTCCGCTTTCTTTTGTTCGAAAACA
TCGAGTACAGACAGTACAAAAGGCTGTTATTTATACTGGTAATAGGTCAA
AAATGAACAATGAACCCGCTCCATCGATGAGATGACCCGACATGACATGA
TTTACCCGCCGTCGAGGTGCTGTACTGTTCCCTTCAAAACAAAGAATCCT
TTCTAGCCAGCTAGCTCTGTATCCCCAAAACTTTTCAGGCAGTTCTACTT
AATGCGAAAATGGACCTTTGAACGATGAATGATTTTCTGACGCAAAAATG
ATAATATACTGTATGAAACAGGAGAGGGAAGTGGTAAGACATTATAAGGC
AGAGAGGGATTCTCTTCTACCGTAGGAAACGGCGCTCTGGTGACCCTTCT
CCATCACATCAGTAGAAGTAGTGCTGAAACAACCCTCGGGGGCTGCGCTT
GGCCGATGGCGTTGCCCACAGGTGGTGCGGCTGCGTGGGGGCATGCAGCT
CTTCGTAAAGACACTCACGGGAAAGACCGTGACCGTCGACGTGGAGCCGG
GAGACTCGATCGAGACCCTCAAGCACAAGATTCAGGAGAAAGAGGTGAGG
TCGGTCACCTTCGTTAGTCTTGCCGTGGTTTGTATTTTTCTTGCTTTGTT
TTTTTTTACTACCTCGTTGGTGGTCGGGGTGCAGTCGTCGGGGGTGGTGG
CAATGACTCCACGCACTGGAATGCTTTCTTGAACGCTTGCAAAATTCGCC
GTTAACGAACGCCGAAGCCCCCCTCGTAAACAGAACTATTAATAATCGAT
ACTGTACTTGAAGTCGCTGTTTCATCGTTAGACCTTACACGGGGCCAAGC
GTCCTATTAAGCTAATGTTATATGTTGGCTTACCCGGATCCCAACAACAG
GGTATTCCCGCGGATCAGCAACGCATAATCTTCGGAGGGAAGCAGCTGAG
CGGTGCGGACAAGCAGCTCAGCGACTTCGAACTAGAGGAGGGAAACACGT
TGCATCTGGTGTTGCGTCTGCGAGGGGGGCCGAAGGACCACGCGCTCGAC
GCTAGCCTTTCGCGATGCTCGGCATGGCTCTCGAAAGCATGCGTGAACCG
CGCTTGACACGACGTCGCTTGTAGTAGAGTTCTTGCGCAGCTTTTCCCCC
GAGATGATAGGATCGGAGAGAGCAAAGAGCAGGGTTGCAAACGCTCCCTG
GATTATTCTACTTGTGTAGGATGACAGACAGGGGGCAGTGGCTGCAATTC
GTGTGGCTGGAGTTCTTACGCACGATCTTGGGCGTGTTCGGTTGTCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:19699..37745-

>mRNA_A-nodosum_M_contig1175.2.1 ID=mRNA_A-nodosum_M_contig1175.2.1|Name=mRNA_A-nodosum_M_contig1175.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:19699..37745- (Ascophyllum nodosum dioecious)
ATGAGGACTGCGTACTCGCTGGTCGTCGCGGCTTTGGCCACATTTTTTTT
GCTTGGGGATACTTCGAAAGTCATGGCGCCGACGTCTCCAACCGCTCGAC
CACGATGGTTCTTGACAGGCTGGGGTCTTCCTAGACATGAGACCATCCTC
GACCGGGTGGTGCGGCTGCGTGGGGGCATGCAGCTCTTCGTAAAGACACT
CACGGGAAAGACCGTGACCGTCGACGTGGAGCCGGGAGACTCGATCGAGA
CCCTCAAGCACAAGATTCAGGAGAAAGAGGGTATTCCCGCGGATCAGCAA
CGCATAATCTTCGGAGGGAAGCAGCTGAGCGGTGCGGACAAGCAGCTCAG
CGACTTCGAACTAGAGGAGGGAAACACGTTGCATCTGGTGTTGCGTCTGC
GAGGGGGGCCGAAGGACCACGCGCTCGACGCTAGCCTTTCGCGATGCTCG
GCATGGCTCTCGAAAGCATGCGTGAACCGCGCTTGA
back to top