mRNA_A-nodosum_M_contig1163.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1163.26.1
Unique NamemRNA_A-nodosum_M_contig1163.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1163.26.1 vs. uniprot
Match: D8LBW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW3_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.280e-20
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:    2 GAVRCDIWRFIPKMLMPVYAVFMRLLYLDVEKGSRTSVCTSTMELESLSGSDYYQPYWLPSGLTIPFEIMGPFL 223
            GAVR DIWR +PK++MPV+ +FMR L+L  E+GS TSV  + + LE++SGS YYQPYW+P    +PFE+ GPF+
Sbjct:  257 GAVRSDIWRNVPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETVSGSGYYQPYWMPFKRPLPFEVFGPFV 330
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BLAST of mRNA_A-nodosum_M_contig1163.26.1 vs. uniprot
Match: A0A835Z5W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.790e-14
Identity = 45/100 (45.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:    2 GAVRCDIWRFIPKMLMPVYAVFMRLLYLDVEKGSRTSVCTSTMELESLSGSD---YYQPYWLPSGLTIPFEIMGPFLSAVHLDGRAYPRTSPPRLQECGR 292
            GAVR DIWRF+P     VY   MR  +L+VE+G+ TSV  +   L++L G D   Y+QPY LP GL  PFE+ GPF+ A      A P   P   +E  R
Sbjct:  253 GAVRSDIWRFVPPPFKYVYDAVMRAGFLNVEQGAFTSVYAAAAPLDALGGPDGPLYWQPYLLPLGLAHPFEVAGPFVGAT----AAAPAVPPDHEREGAR 348
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1163.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBW3_ECTSI3.280e-2056.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5W3_9STRA8.790e-1445.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1163contigA-nodosum_M_contig1163:228382..229069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBW3
PFAMsadh_short
Model size535
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K11153
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,map00830,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.19e-14
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.1.1.300
Descriptionoxidation-reduction process
Cds size267
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866570.1201985-UTR-A-nodosum_M_contig1163:228381..2286091680866570.1201985-UTR-A-nodosum_M_contig1163:228381..228609Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1163 228382..228609 -
1680866570.1605484-UTR-A-nodosum_M_contig1163:229029..2290691680866570.1605484-UTR-A-nodosum_M_contig1163:229029..229069Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1163 229030..229069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866570.1378305-CDS-A-nodosum_M_contig1163:228609..2287671680866570.1378305-CDS-A-nodosum_M_contig1163:228609..228767Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 228610..228767 -
1680866570.1492429-CDS-A-nodosum_M_contig1163:228920..2290291680866570.1492429-CDS-A-nodosum_M_contig1163:228920..229029Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 228921..229029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1163.26.1prot_A-nodosum_M_contig1163.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1163 228610..229029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1163.26.1

>prot_A-nodosum_M_contig1163.26.1 ID=prot_A-nodosum_M_contig1163.26.1|Name=mRNA_A-nodosum_M_contig1163.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MLMPVYAVFMRLLYLDVEKGSRTSVCTSTMELESLSGSDYYQPYWLPSGL
TIPFEIMGPFLSAVHLDGRAYPRTSPPRLQECGRRVLG*
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mRNA from alignment at A-nodosum_M_contig1163:228382..229069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1163.26.1 ID=mRNA_A-nodosum_M_contig1163.26.1|Name=mRNA_A-nodosum_M_contig1163.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=688bp|location=Sequence derived from alignment at A-nodosum_M_contig1163:228382..229069- (Ascophyllum nodosum dioecious)
GGGGGCGGTGAGGTGTGACATATGGCGTTTCATCCCCAAAATGTTGATGC
CGGTGTACGCTGTCTTCATGAGGCTGCTGTATCTCGACGTGGAGAAGGGC
AGCCGCACTTCCGTGTGCACGTCAACCATGGAGCTGGAGAGCCTCTCCGG
TGAGTTCTGGCCGAAGGTCATCGGCTACGCGAGGACTTGTACCTTCGGCA
CTTGGCTCCCTCCCTCGGCCGAAATCACCTTTCAAAGCCAGTTTCTCGGT
CGTTAGTCTGGTACGTGTTCAACACATTTGTCCCCCTTGCCCCTTGGCAC
AGGGAGCGACTACTATCAGCCGTATTGGCTGCCGTCCGGTTTGACGATCC
CGTTCGAGATTATGGGCCCCTTTTTGTCGGCTGTGCACCTGGACGGCCGA
GCTTACCCTAGGACGAGCCCACCGCGTCTGCAGGAATGTGGGCGGCGTGT
ACTTGGATAGTGAGGACCACCGAAGCGGCACGCAATGGCGCCCCGACATC
CTCGTAGAGACATATTTCTCCAGGACTTGTGAATCCCCGGGGAATTTTGC
GTAGATGTCGCGGGATAGTGAAACTGTCGACGTTGTGTGAGGTGGGTCGG
TAGCTCTCGTGAGTTTCTCGCGAGTGAAAGGATGGTTACTTGACGATGTC
GCGCTCCAATTATCCCTCTTCCAACTATATAATTACCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1163:228382..229069-

>mRNA_A-nodosum_M_contig1163.26.1 ID=mRNA_A-nodosum_M_contig1163.26.1|Name=mRNA_A-nodosum_M_contig1163.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1163:228382..229069- (Ascophyllum nodosum dioecious)
ATGTTGATGCCGGTGTACGCTGTCTTCATGAGGCTGCTGTATCTCGACGT
GGAGAAGGGCAGCCGCACTTCCGTGTGCACGTCAACCATGGAGCTGGAGA
GCCTCTCCGGGAGCGACTACTATCAGCCGTATTGGCTGCCGTCCGGTTTG
ACGATCCCGTTCGAGATTATGGGCCCCTTTTTGTCGGCTGTGCACCTGGA
CGGCCGAGCTTACCCTAGGACGAGCCCACCGCGTCTGCAGGAATGTGGGC
GGCGTGTACTTGGATAG
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