mRNA_A-nodosum_M_contig11607.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11607.1.1
Unique NamemRNA_A-nodosum_M_contig11607.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11607.1.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-12
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  196 EAFGTNASKAACKNTAARQVIDAVKKVVEHLNKSNVMKVKYEDMQHLM 339
            EAFGTNAS+AACKN  ARQVID VKKVVEHLNKS +MK +Y+D+Q L+
Sbjct:  357 EAFGTNASRAACKNLGARQVIDTVKKVVEHLNKSTLMKARYDDIQVLL 404
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11607.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.240e-1275.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11607contigA-nodosum_M_contig11607:7149..9252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866566.1495285-UTR-A-nodosum_M_contig11607:7148..72381680866566.1495285-UTR-A-nodosum_M_contig11607:7148..7238Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11607 7149..7238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866566.1583898-CDS-A-nodosum_M_contig11607:7238..73461680866566.1583898-CDS-A-nodosum_M_contig11607:7238..7346Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11607 7239..7346 +
1680866566.16828-CDS-A-nodosum_M_contig11607:8629..87401680866566.16828-CDS-A-nodosum_M_contig11607:8629..8740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11607 8630..8740 +
1680866566.1781242-CDS-A-nodosum_M_contig11607:9222..92521680866566.1781242-CDS-A-nodosum_M_contig11607:9222..9252Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11607 9223..9252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11607.1.1prot_A-nodosum_M_contig11607.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11607 7239..9252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11607.1.1

>prot_A-nodosum_M_contig11607.1.1 ID=prot_A-nodosum_M_contig11607.1.1|Name=mRNA_A-nodosum_M_contig11607.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MASVDNSIGGAAGDASSGQEPIDVEPGSSPSPMDNEAFGTNASKAACKNT
AARQVIDAVKKVVEHLNKSNVMKVKYEDMQHLM
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mRNA from alignment at A-nodosum_M_contig11607:7149..9252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11607.1.1 ID=mRNA_A-nodosum_M_contig11607.1.1|Name=mRNA_A-nodosum_M_contig11607.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2104bp|location=Sequence derived from alignment at A-nodosum_M_contig11607:7149..9252+ (Ascophyllum nodosum dioecious)
CGCGATCACCGAGAGCAAGAAGAGTAGAGTTGAgGGTAGAGTTTAGAGTT
GTCTTGCGTGCGACACACGCCACACACCAAACGACTCAGCATGGCGTCTG
TCGACAACTCCATCGGCGGTGCTGCCGGCGACGCAAGCAGTGGACAGGAG
CCGATCGATGTGGAACCTGGCTCCAGCCCCAGCCCCATGGACAATGAGGT
GCGTCACTTTGTCTTTTTGCTTTCTTGGGTTCAACAGGAGCACTCAGTCA
ACCCATATTGCTGCGCTGAACGCGCTTTGAAGGGCCAGACTGACCAACTG
TACTTCTGTACTTCTCTGGCCCCGCCCAATATGATCCTTTTGGACTCACT
AGCGCTCCTTCCTTTACAATAGCCTTTTTCCCCCAGACTGGGGGATGCTC
AGAAGGTCTAGGTGCATTCAGATTTTTCTTAAACAGGTTTGTTTGAGGTG
TAACACAATACTGTATAAAGTTCCACGTTCCCTAATGGCATGACGTGTAG
TAAAATGTTACTGGATTGTATGGCCATCTCTATAACACCATGCTTGATGG
GGTACTATATTGCCTCTGGTTTTGTTTTTCTTGTGTACTTACATGACGAT
CAAGGTTACTATACTGTCGGCCCAGCCTCTGATCCCATCTAAACGTTTGT
ATGCCCAGAAGGTCCAGGCGTGTTTTGATATGTACTAGGATCACGGTCTA
CATATATACCACCTGAAAATAACCTTTGATCCCACCTAAACGTTTTGACA
TTTGTTTTTCCCCATAACCGGGTACATCTGTTTTGATTTTTCTTTAAACA
CCCATCTGAAACTGAGTTGTAACCCAAGCTTCCCGTGTATTCTGTGGTTG
TACAATACCCTTGCATGAGAATTAAATTATACAGTATACTAGTGTACAAA
TTACTATTTGCCCAAGCCCCTATTCCTGTATGTCTCGATGGTACTATTAT
CCGTGCTATTATCGACAGTAGTACTATACTCGTAACGGTATGTATTACTG
TGGTTATGTTGTGGTATGATTGGTGGCTGCGCATGGTGATTAATATACAG
TATAGCGGTGGGCTTCTCCCCGACATTATACTCTGTTGACCCAAGGTTAC
TACCAGTGGGGAACCCGTTTAAATACCATGTAGTGGCTTGGTATTTACAA
CCTTTGTAATTTATATTACTACTACCATGTGTGATGGTGTATTACATTGT
CTTTTGTTTTCAATGTTTTTCTGGTGTCCCTACATGGCGATTAATGTAAA
TGTACAGTATAACGGTGGGTTTCTCCCCGACATTATACTGTTGACCCAAT
GTTATCTGCATCGAGGAACCTGTTTAAATGCCATGAAGAGGTTTTGTATT
TGTAGCCTTTGATCCCACCTAAACTTTTTGACATTTTTTCCCCATAAGTG
GGAGATGCTCAGAAGGTCTAGATGCGTTCTGATTTTTCTTTAAACAACAG
TCTACGTTCCCACCTAAACGTTTGTATACAGGCGTTCGGTACGAACGCAT
CGAAGGCAGCCTGCAAAAACACCGCCGCTCGGCAAGTCATCGATGCAGTC
AAGAAGGTCGTGGAGCACCTCAACAAGAGCAACGTGATGAAGGTGCGTGA
AACTAACATGAACAGGTTGACCTTCGTGAGGAGCAACGTTAACGATAATT
TTAACTTGCAGTGCTGCACCGAGAAACCACACTCACATGTCCCAACTTGC
TTTTTCACAAGTGGGGTCCTCGTAGTGTCCTTGCTGTTTTCGAAGTCCAA
AGCTACTGATGCAGTCTGCTATCGTGCCACATACTGTTGCGGTGATTGGT
TTCAAAGGTTTGTTTGCGAGAGGTGAAGTTTAGCCTCGAGAGAGGTTGAC
GTTTCAGGTCTCACTTCAACATACTTTGACGTGCTTTCCTGTTTCATGTC
TACGGTTTAAGTTTTCCGCGTCCCGCGTTTGTTATACACCCCCGCCCAAC
AACAAAAGTGGAAGAGGAGAGTGTGAGACAGAGTTGAACTTGTGCGTGTT
TGTGGTTCAGGCGCTGATGTTGGTTTGTTCGTTGCCCACCCCCGCGCCAA
AATTTCCCTATTGACAATCATCAGGTCAAGTACGAAGACATGCAACACCT
CATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11607:7149..9252+

>mRNA_A-nodosum_M_contig11607.1.1 ID=mRNA_A-nodosum_M_contig11607.1.1|Name=mRNA_A-nodosum_M_contig11607.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig11607:7149..9252+ (Ascophyllum nodosum dioecious)
ATGGCGTCTGTCGACAACTCCATCGGCGGTGCTGCCGGCGACGCAAGCAG
TGGACAGGAGCCGATCGATGTGGAACCTGGCTCCAGCCCCAGCCCCATGG
ACAATGAGGCGTTCGGTACGAACGCATCGAAGGCAGCCTGCAAAAACACC
GCCGCTCGGCAAGTCATCGATGCAGTCAAGAAGGTCGTGGAGCACCTCAA
CAAGAGCAACGTGATGAAGGTCAAGTACGAAGACATGCAACACCTCATG
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