mRNA_A-nodosum_M_contig1142.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1142.8.1
Unique NamemRNA_A-nodosum_M_contig1142.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.110e-16
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 2
Query:    2 EKKTVTMHMR----PPTMKAEA----VAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            EKKT T+ MR    P T    A    + +EAAGQ+Y+Q   F YLG  ++  GD+  EI  R+  AW C  +Y R ++D P      K+R L+AE +E +L     W+   G +  LR  H  +LLR +
Sbjct:  316 EKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 444          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183SI55_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SI55_SCHSO)

HSP 1 Score: 60.8 bits (146), Expect = 2.360e-8
Identity = 37/119 (31.09%), Postives = 56/119 (47.06%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            KTV MH  PP+ +  A  +   G +   V+TF YLGST+S    +  E+ +R   A   F +   +V++   I +  K++  KA  L+ +L     WT+      KL   H   L R L
Sbjct:  442 KTVVMHQTPPSTEYNAPRIHVNGGQLKNVETFAYLGSTLSRNTRIDDEVVQRISKASQTFGQLQASVWNRHGIHLNTKLKMYKAVALKTLLYEAETWTVYSNQARKLNHIHLSCLRRIL 560          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TGW2_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TGW2_SCHSO)

HSP 1 Score: 59.3 bits (142), Expect = 4.000e-8
Identity = 37/119 (31.09%), Postives = 54/119 (45.38%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            KTV MH  PP+ +  A  +   G +   V+TF YLGST+S       E+ +R   A   F +   +V++     +  K++  KA VL  +L     WT+      KL   H   L R L
Sbjct:   19 KTVVMHQPPPSAEYNAPQININGAQLKNVETFAYLGSTMSRNARTDVEVAQRISKASQAFGRLQASVWNRHGFHLNTKLKMYKAVVLTTLLYGVEAWTVYSNQARKLNHFHLSCLRRIL 137          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TFG9_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TFG9_SCHSO)

HSP 1 Score: 58.2 bits (139), Expect = 1.590e-7
Identity = 34/111 (30.63%), Postives = 54/111 (48.65%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAH 325
            K V MH  PP+ +  A  +   G +   V+TFVYLGST+S    +  E+ +R   A   F +   +V++   I +  +++  KA VL  +L     WT+     +KL   H
Sbjct:  184 KMVVMHQPPPSAEYNAPRINVNGAQLKNVETFVYLGSTLSRKTRIDDEVTQRISKASQAFGRLQASVWNRHGIHLNTQLKINKAVVLTTLLYKAETWTVYSNQTNKLNHFH 294          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183SM67_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SM67_SCHSO)

HSP 1 Score: 56.2 bits (134), Expect = 2.390e-7
Identity = 35/119 (29.41%), Postives = 52/119 (43.70%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            KTV MH  PP+ K  A  +   G +   V+TF YLGST+S    +  E+ +R       F +   + ++   I +  K++  KA VL  +L     WT+           H   L R L
Sbjct:   23 KTVVMHQPPPSAKYNAPRINVNGDQLKNVETFAYLGSTLSRNMIINDEVTQRISKPRQAFGRLQTSTWNRHGIHLNTKLKMYKAVVLTTLLYGGETWTVYSNQARNRNHFHLSCLRRIL 141          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TEZ8_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TEZ8_SCHSO)

HSP 1 Score: 57.0 bits (136), Expect = 4.770e-7
Identity = 38/119 (31.93%), Postives = 53/119 (44.54%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            K V MH  P T +  A  +   G +   V+TF YLGST+S    +  E  +R   A   F +   +V++   I +  K++  KA VL  +L     WTL      KL   H   L R L
Sbjct:  139 KMVVMHQPPFTAEYNAPRINVNGAQLKNVETFAYLGSTLSRNAKIDDEFAQRISKASQAFGRLQASVWNRHSIHLNTKLKMYKAVVLTTLLYGAETWTLYSNLAMKLNHFHLSCLRRIL 257          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A7M3Q5D8_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3Q5D8_SPIER)

HSP 1 Score: 54.7 bits (130), Expect = 6.380e-7
Identity = 37/122 (30.33%), Postives = 55/122 (45.08%), Query Frame = 2
Query:    5 KKTVTMHMRPP--TMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            KK V MH  PP  T  + A  +   G +   VD+F YLGST+S    +  E+ RR   A   F +    V +   + ++ K++  KA +L  +L     WT+      +L   H   L R L
Sbjct:   22 KKMVVMHQPPPNATPLSNAPQISMNGTQQQVVDSFPYLGSTLSRSTKIDDEVARRISKASQTFSRPQSTVLNRHGLQLSTKLKVYKAVILPTLLYGAETWTVYTKQARRLNHFHLSFLRRIL 143          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A8K0K052_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K052_LADFU)

HSP 1 Score: 54.3 bits (129), Expect = 9.910e-7
Identity = 31/90 (34.44%), Postives = 44/90 (48.89%), Query Frame = 2
Query:   14 VTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVMLW 283
            + M    P       AV  A  +  +VD F YLGS ++S GD+  EI  R   A + F K  + V+ N  ++   KV   KA VL V+L+
Sbjct:   24 LVMKCHAPLSPQIETAVSLASSQIEEVDQFSYLGSLVTSKGDMDTEINHRFQCAAHAFYKLRKRVFKNKDLSAKTKVAVFKAVVLSVLLY 113          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TCJ5_SCHSO (Uncharacterized protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TCJ5_SCHSO)

HSP 1 Score: 54.7 bits (130), Expect = 1.460e-6
Identity = 35/119 (29.41%), Postives = 54/119 (45.38%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVML-----WTLSPGDFDKLREAHRGMLLRCL 349
            KTV M  RPP+ +  A  +   G     V+TF YLGST+S    +  E+ +R       F +   +V+++  I +  K++  +A VL  +L     W+       KL   H   L R L
Sbjct:   28 KTVVMRQRPPSAEYNAPRINVNGAHLKNVETFAYLGSTLSRNTRIDDEVAQRILKISQAFGRLQASVWNSHGIHLKTKLKMYEAVVLTTLLYGAETWSTYSNQDRKLNHFHLSYLRRIL 146          
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Match: A0A183TLP1_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TLP1_SCHSO)

HSP 1 Score: 53.5 bits (127), Expect = 2.820e-6
Identity = 33/104 (31.73%), Postives = 49/104 (47.12%), Query Frame = 2
Query:    8 KTVTMHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVMLWTLSPGDFDKLRE 319
            KTV MH  PPT K  A  +   G ++  V+TF YLG T+S    +  E+ +R   A   F +    + +   I V  K++  K  VL  ++ +   G  D L E
Sbjct:   51 KTVVMHQPPPTAKYNAPRINVNGAQFKNVETFAYLGGTMSRNTRIDDELAQRICKASQAFSRLQAFMCNRHGIHVNTKLKMYKVVVLATLIRS---GGLDHLLE 151          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBT2_9PHAE3.110e-1637.21Reverse transcriptase domain-containing protein (F... [more]
A0A183SI55_SCHSO2.360e-831.09Uncharacterized protein n=1 Tax=Schistocephalus so... [more]
A0A183TGW2_SCHSO4.000e-831.09Uncharacterized protein n=1 Tax=Schistocephalus so... [more]
A0A183TFG9_SCHSO1.590e-730.63Reverse transcriptase domain-containing protein n=... [more]
A0A183SM67_SCHSO2.390e-729.41Uncharacterized protein n=1 Tax=Schistocephalus so... [more]
A0A183TEZ8_SCHSO4.770e-731.93Reverse transcriptase domain-containing protein n=... [more]
A0A7M3Q5D8_SPIER6.380e-730.33Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A8K0K052_LADFU9.910e-734.44Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A183TCJ5_SCHSO1.460e-629.41Uncharacterized protein n=1 Tax=Schistocephalus so... [more]
A0A183TLP1_SCHSO2.820e-631.73Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1142contigA-nodosum_M_contig1142:252860..253229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005110414.1
PFAMsRVT_1
Model size356
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.37e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866547.347768-CDS-A-nodosum_M_contig1142:252859..2529351680866547.347768-CDS-A-nodosum_M_contig1142:252859..252935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 252860..252935 -
1680866547.3591268-CDS-A-nodosum_M_contig1142:252950..2532101680866547.3591268-CDS-A-nodosum_M_contig1142:252950..253210Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 252951..253210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866547.3680696-UTR-A-nodosum_M_contig1142:253210..2532291680866547.3680696-UTR-A-nodosum_M_contig1142:253210..253229Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1142 253211..253229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1142.8.1prot_A-nodosum_M_contig1142.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1142 252860..253210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1142.8.1

>prot_A-nodosum_M_contig1142.8.1 ID=prot_A-nodosum_M_contig1142.8.1|Name=mRNA_A-nodosum_M_contig1142.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
MHMRPPTMKAEAVAVEAAGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTG
YAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVLEVMLWTLSPGDFDKLRE
AHRGMLLRCLNA
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mRNA from alignment at A-nodosum_M_contig1142:252860..253229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1142.8.1 ID=mRNA_A-nodosum_M_contig1142.8.1|Name=mRNA_A-nodosum_M_contig1142.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=370bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:252860..253229- (Ascophyllum nodosum dioecious)
GGAAAAGAAGACGGTGACCATGCACATGCGCCCCCCCACCATGAAGGCAG AAGCGGTTGCCGTGGAGGCCGCGGGGCAAAGGTACAGCCAAGTCGACACC TTCGTGTATCTTGGCAGCACCATCAGCAGCGTTGGGGACGTTGGCCCTGA GATCAAACGCCGGACTGGCTACGCCTGGAACTGCTTCCTCAAGTACAGCA GGGCGGTGTACGACAACCCATACATCGCAGTGGCAGACAAGGTCCGTTTC CTGAAGGCGGAAGTACTCGAGGTCATGCTCTACGGCTGTGTGACCTGGAC TCTCTCACCCGGCGATTTCGACAAGCTGCGGGAAGCCCATCGCGGAATGC TGCTGAGGTGCCTCAATGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:252860..253229-

>mRNA_A-nodosum_M_contig1142.8.1 ID=mRNA_A-nodosum_M_contig1142.8.1|Name=mRNA_A-nodosum_M_contig1142.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:252860..253229- (Ascophyllum nodosum dioecious)
ATGCACATGCGCCCCCCCACCATGAAGGCAGAAGCGGTTGCCGTGGAGGC
CGCGGGGCAAAGGTACAGCCAAGTCGACACCTTCGTGTATCTTGGCAGCA
CCATCAGCAGCGTTGGGGACGTTGGCCCTGAGATCAAACGCCGGACTGGC
TACGCCTGGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTACGACAACCC
ATACATCGCAGTGGCAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCG
AGGTCATGCTCTGGACTCTCTCACCCGGCGATTTCGACAAGCTGCGGGAA
GCCCATCGCGGAATGCTGCTGAGGTGCCTCAATGCC
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