mRNA_A-nodosum_M_contig1142.5.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1142.5.2
Unique NamemRNA_A-nodosum_M_contig1142.5.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 4.160e-133
Identity = 225/483 (46.58%), Postives = 288/483 (59.63%), Query Frame = 1 
Query:  181 MTRMTAVLLICLAPSVLAASPPAGSLRRSQEDTE---AAGVAPRRLSTSDLEPAEDEEGYYAHLGCYMDK-KDDRVLGMKLARDDITAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGTCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDTEERVMSNIYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYRL-IDESPEPAXXXXXXXXXXXXXXXXXXXEVGSVNNEKAEYPFDG----TTFSGDGTYYGKTSNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDAPSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPG-APYPLYGAQRVKTTTMMGKTATQEVSL 1599
            MTR+ A LL+C  P          SL  S    E   AAG A R LS S  E        Y HLGCY+D    +    + L  D +T ELC++ C+  GAF+M TQ GNEC CSRE DLD+   + G CD+PCAGD +E CGG    DLY+L   D P   EY  C++D  E RVM ++ + + MT+ +CRDHC+  +A+YYATQYG+EC+CG S    DYE +G G CHM CAGD+ +ACGG +AFSL++   D  P+PA                      S++  +++ P  G    TTF GDGTYY   S GNC      PS+Y GM PVALNAAQYG S +CG+C+EGEG+G G G +PI G+FK ++MDKCPEC  GDLDF    DGRWDI W+FV CPG +    + E +  +YWKIQPRGT TPV  LT+ G + ++TDDN FE+   +  P Y  Q V TTT+ G     E+S+
Sbjct:   65 MTRLAAALLVCATP--------VASLETSLRGAEVAAAAGGARRGLSGSSYES-------YEHLGCYVDNGMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSFESGVCDEPCAGDSTETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEPAPEPVVSTPAPSMSEAESKTPISGGVYGTTFEGDGTYYTGISAGNCGFFDDFPSIYSGMTPVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMT-PYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 8.570e-130
Identity = 242/520 (46.54%), Postives = 300/520 (57.69%), Query Frame = 1 
Query:  181 MTRMTAVLLICLAPSVLAASPPAGSLRRSQEDTE-AAGVAPRRLSTSDLEPAEDEEGYYAHLGCYMDKKDDRVLGMKLAR-------DDITAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGTCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDTEERVMSNIYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYRL-IDESPEPAXXXXXXXXXXXXXXXXXXXEV------------------------------------GSVNNEKAEYPFDGTTFSGDGTYYGKTSNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDAPSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEV--PGAPYPLYGAQRVKTTTMMGKTATQEVSL 1599
            MTR+ A LL+C  P          SL  S    E +AG A R LS S  E        Y H+GCY+D       GM  AR       + +T E+C++ C+  G+F+M TQ GNEC CSRE DL +   D G CD PCAGD  E CGG    DLY+L    TP   EY+ C++D  E RVM ++ + + MT+ +CRDHC+  +A+YYATQYG+EC+CG S    DYE +G G CHM C GD+ +ACGG +AFSLY+   D  PEP      XXXXXXXXXXXXXX                                      G  +    EY   G TF+G+GTYY  TS GNC      PS+YDGM PVALN  QYG S +CGAC+EGEG+G G+GSDP+ G+FK ++MDKCPEC+ GDLDF    DGRWDI WKFVECP  +  SF  E   ++YWKIQPRGT TPV  LT+ G + ++TDDN FE+  P    P Y  Q V TTT+ G     E+S+
Sbjct:    1 MTRLAAALLVCATP--------VASLETSLRGAEVSAGGARRGLSGSSYEA-------YEHVGCYVDN------GMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEPDVPESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGGGGDVSGGEY---GITFNGEGTYYTGTSAGNCGFFDDFPSIYDGMTPVALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGD-PWYEPQMVVTTTVGGVVEETEMSV 494
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 5.620e-67
Identity = 109/188 (57.98%), Postives = 134/188 (71.28%), Query Frame = 1 
Query: 1042 PFDGTTFSGDGTYYGKT--SNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDAPSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTTMMGKTATQEVSL 1599
            P+D   FSGD TYYG T   +GNCAIRSP+P MYDGMIPVALN  QY  S +CGACIEGEG G G G DP+ G+FKAYV D+CPEC  GDLDF+  GDGRWDISW FV C G    +F+FEGS++FYWKIQPRG ++PV  L ++G    +++DNFF + G P+   G Q V T T++ K   Q V++
Sbjct:   36 PYD-EQFSGDATYYGVTPDGDGNCAIRSPLPEMYDGMIPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFD--GEQEVHTKTVLNKRRRQSVAM 220
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 2.390e-66
Identity = 109/183 (59.56%), Postives = 132/183 (72.13%), Query Frame = 1 
Query: 1051 GTTFSGDGTYYGKTSNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDAPSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTTMMGKTATQEVSL 1599
            G  +SG+GTYYG T+ G C+    +P MYDGMIPVALNA QYG S +CGAC+EG  SG+G+G++PI  +FKA++ DKCPEC  GDLDFS SGDGRWDI WKFV CPG +  SF+   ++ +YWK+QPRGT TPVV LTVDG S  +T DN FEV        GAQ V TTT+ G T T EVS+
Sbjct:  105 GEEYSGEGTYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEET-SFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.440e-64
Identity = 111/202 (54.95%), Postives = 145/202 (71.78%), Query Frame = 1 
Query:  346 GYYAHLGCYMDKKDDRVLGMK-LARDDITAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRH-DVGTCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDTEERVMSNIYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYRLIDESPEP 945
            G Y H+GC+ D + DRVL    L   D+TAELC+E C+  GA YMATQ+G EC+CSR+G LD+DRH D G CD PC GD+SE CGG ++F+LY L W   P D EY+ CY D+  +RV+S++  SDDMT+A+CR+HC DK+A YY TQ+  ECWCGTSD  ADYE++G+G CHM C+GD + ACGG  A+SL++  +    P
Sbjct: 1143 GAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAP 1344
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 6.490e-58
Identity = 103/194 (53.09%), Postives = 138/194 (71.13%), Query Frame = 1 
Query:  349 YYAHLGC--YMDKKDDRVLGMKLARDDITAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRH-DVGTCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDTEERVMSNIYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYR 921
            Y+A L C  ++ K+    +   L   D+TAELC+E C+  GA YMATQ+G EC+CSR+G LD+DRH D G CD PC GD+SE CGG ++F+LY L W   P D EY+ CYAD   +RV+ ++  SD+MT+ +CR+HC DK+A YY TQ+  ECWCGTSD  ADYE++G+G CHM C+GD + ACGG  A+SL++
Sbjct:  797 YFAGLACLPHLAKQPLHHVRSGLISSDMTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCIGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 990
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR)

HSP 1 Score: 211 bits (536), Expect = 9.430e-58
Identity = 95/162 (58.64%), Postives = 121/162 (74.69%), Query Frame = 1 
Query: 1057 TFSGDGTYYGKTSNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDAPSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVP---GAPYPL 1533
            TF GDGTYYG T+ GNCAIRSP+P MY GM+PVA+N AQY  S+ CGAC+   G G G+G++P+ G+FKAYV D+CPEC  GD+D SKSGDGRW + W+F+ CPG +   F+FEGS++FY K+QPRG KTPV   +V+G  G+KT DNF+ +    G  YPL
Sbjct:   23 TFFGDGTYYGYTTRGNCAIRSPLPGMYSGMVPVAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPG-EWVFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGFRYPL 183
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 8.930e-57
Identity = 98/188 (52.13%), Postives = 128/188 (68.09%), Query Frame = 1 
Query: 1060 FSGDGTYYGKTSNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDAPSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQRVKTTTMMGKTATQEVSL*MVVSSRD 1623
            F G+GTYYG T+ GNCAIRSP+PSMY+GM+PVA+N AQY  S  CGAC++  G G G+G++PI G+FKAYV D+CPEC  GD+D SK GDGRW + WKF+ CPG +   F+FEGS+++Y K+QPRG KTPV  L+V G  G+KT DNF+ V        G  R   T  M     + +++ +  S  D
Sbjct:   29 FHGEGTYYGYTTRGNCAIRSPMPSMYNGMLPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPG-EFVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIVQNG-----GGFRFPITVQMRTVLNEWITVQLAYSRPD 210
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 5.250e-51
Identity = 87/195 (44.62%), Postives = 131/195 (67.18%), Query Frame = 1 
Query:  340 EEGYYAHLGCYMDKKDDRVLGMKLARDDITAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGTCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDTEERVMSN-IYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYR 921
            EEGY +++GC+ D KDDRV         +T  +C EYC    A +MATQFG EC+CS + ++++DRH  G CD  C G+ ++ CGG+ AFDLY++  P  PT  EY+ C+ADD E+R++ + I +  DMT  +CR +C++++A +YATQYG ECWCG S+   DY+++G+G+C   C+GD + ACG  +   +Y+
Sbjct:    8 EEGY-SYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCECGGEATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYK 201
[Close]
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.570e-51
Identity = 93/203 (45.81%), Postives = 138/203 (67.98%), Query Frame = 1 
Query:  340 EEGYYAHLGCYMDKKDDRVLGMKLARDDITAELCHEYCNVNGAFYMATQFGNECFCSREGDLDFDRHDVGTCDKPCAGDDSERCGGYYAFDLYELVWPDTPTDLEYMDCYADDTEERVMSN-IYISDDMTSAICRDHCKDKNALYYATQYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYRLIDESPEP 945
            +EGY +++GC+ D K+DRV         +T  +C EYC    A YMATQ+G EC+CS + ++++DRH  G CD  C GD ++ CGG+ AFDLY++  P  PT  EY+ C+ADD E+R++ + I +  DMT A+CR +C++++A +YATQYG ECWCG S+   DY+++G+G+C   C+GD + ACGG  AF+L++  D   EP
Sbjct:  430 DEGY-SYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF-DGIAEP 630
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1142.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBW3_9PHAE4.160e-13346.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LGP4_ECTSI8.570e-13046.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHU1_ECTSI5.620e-6757.98Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
D8LRN1_ECTSI2.390e-6659.56Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FRE8_ECTSI3.440e-6454.95EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE6.490e-5853.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F2Z7J0_9FLOR9.430e-5858.64Uncharacterized protein n=1 Tax=Gracilariopsis and... [more]
A0A2V3ISL2_9FLOR8.930e-5752.13Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=... [more]
A0A6H5JMV6_9PHAE5.250e-5144.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LED7_ECTSI5.570e-5145.81EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1142contigA-nodosum_M_contig1142:167091..182470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGP4
PFAMsKringle,LPMO_10,WSC
Model size3287
Max annot lvl2759|Eukaryota
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categorysignal peptide
Exons11
Evalue1.56e-137
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.4.21.7
Descriptionprotein xylosyltransferase activity
Cds size1422
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1142.5.2prot_A-nodosum_M_contig1142.5.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1142 168776..181012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866546.913409-UTR-A-nodosum_M_contig1142:167090..1687751680866546.913409-UTR-A-nodosum_M_contig1142:167090..168775Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1142 167091..168775 -
1680866547.029442-UTR-A-nodosum_M_contig1142:181012..1810131680866547.029442-UTR-A-nodosum_M_contig1142:181012..181013Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1142 181013..181013 -
1680866547.097917-UTR-A-nodosum_M_contig1142:182291..1824701680866547.097917-UTR-A-nodosum_M_contig1142:182291..182470Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1142 182292..182470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866546.9279034-CDS-A-nodosum_M_contig1142:168775..1691141680866546.9279034-CDS-A-nodosum_M_contig1142:168775..169114Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 168776..169114 -
1680866546.9390435-CDS-A-nodosum_M_contig1142:169475..1695851680866546.9390435-CDS-A-nodosum_M_contig1142:169475..169585Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 169476..169585 -
1680866546.9516044-CDS-A-nodosum_M_contig1142:170029..1702901680866546.9516044-CDS-A-nodosum_M_contig1142:170029..170290Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 170030..170290 -
1680866546.9620411-CDS-A-nodosum_M_contig1142:173797..1739061680866546.9620411-CDS-A-nodosum_M_contig1142:173797..173906Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 173798..173906 -
1680866546.9718163-CDS-A-nodosum_M_contig1142:174089..1742151680866546.9718163-CDS-A-nodosum_M_contig1142:174089..174215Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 174090..174215 -
1680866546.9799206-CDS-A-nodosum_M_contig1142:174500..1745781680866546.9799206-CDS-A-nodosum_M_contig1142:174500..174578Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 174501..174578 -
1680866546.992261-CDS-A-nodosum_M_contig1142:174926..1750701680866546.992261-CDS-A-nodosum_M_contig1142:174926..175070Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 174927..175070 -
1680866547.0005183-CDS-A-nodosum_M_contig1142:175249..1753191680866547.0005183-CDS-A-nodosum_M_contig1142:175249..175319Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 175250..175319 -
1680866547.0092244-CDS-A-nodosum_M_contig1142:175808..1759031680866547.0092244-CDS-A-nodosum_M_contig1142:175808..175903Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 175809..175903 -
1680866547.0210123-CDS-A-nodosum_M_contig1142:180922..1810121680866547.0210123-CDS-A-nodosum_M_contig1142:180922..181012Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1142 180923..181012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1142.5.2

>prot_A-nodosum_M_contig1142.5.2 ID=prot_A-nodosum_M_contig1142.5.2|Name=mRNA_A-nodosum_M_contig1142.5.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=474bp
MTRMTAVLLICLAPSVLAASPPAGSLRRSQEDTEAAGVAPRRLSTSDLEP
AEDEEGYYAHLGCYMDKKDDRVLGMKLARDDITAELCHEYCNVNGAFYMA
TQFGNECFCSREGDLDFDRHDVGTCDKPCAGDDSERCGGYYAFDLYELVW
PDTPTDLEYMDCYADDTEERVMSNIYISDDMTSAICRDHCKDKNALYYAT
QYGHECWCGTSDVFADYEKYGKGACHMRCAGDTSAACGGRYAFSLYRLID
ESPEPAPTPEPTPEPTPEPAAESTAEVGSVNNEKAEYPFDGTTFSGDGTY
YGKTSNGNCAIRSPIPSMYDGMIPVALNAAQYGGSELCGACIEGEGSGNG
AGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDA
PSFIFEGSHQFYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYP
LYGAQRVKTTTMMGKTATQEVSL*
back to top

mRNA from alignment at A-nodosum_M_contig1142:167091..182470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1142.5.2 ID=mRNA_A-nodosum_M_contig1142.5.2|Name=mRNA_A-nodosum_M_contig1142.5.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=15380bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:167091..182470- (Ascophyllum nodosum dioecious)
GTTGGGATTCGGCACCTCCAACTATATACAACGAGCGACCGCAACCACCC
AACGCACCCACCCACCCCAAAACTCACTCACCACCACTCACCAATATTAT
CAAAATCGTCACCTTCGCCCTTCCTTCTCAATCACCTGACTGAGAGCACC
ATCGACGTTTAGTCAAGGCAAAATAAAAGGTCAGTCACCACAGTCCCAAA
CATATCATGAATATACTGCTGTCCGTACAGTTCCAGTTTCTTTCAGATTG
GTTATATGGTGGCCCAAGCGTCTGTTATAAGTACTGTTGTATGTATGGTC
ATGACATATTATAGCAGAGTATATGTATGTACTGTATATAGATACTGAAT
AATGATGGTAAGAATCGATAAGTTTCTCTATTATTATGGTGAAGACAACC
TAACTGTGTTGATCGTGGTTTTAAGGATTGGCCGCACGTTCGGGGCTACG
TTTGCTTTTTATTAGTAGTTCACATACCGACACACACCACTTGGATTGGG
TAGATCAATGCGAGTGACATAGAATGGCTAGGATGACAGAGCCAGATTGC
GCGGTAGATGTACAATTTAATTAACAAATACAAACACACACACACACACA
CAGAGGTTTTCGCAGTAAGTATCATTGATCCCTCGGGAGGATCAATGCGA
GTGGCATATAATGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCA
ATTTAATAAATACACACACACACACACACACATCTCCTGGTCGACATAGC
TGTAGACTTTATATCATGGCAATCCCTGTACAGATGTAGTTAGTCGCTGC
TTCCGTTTCTTCGCCGAACGAATACTGATGGTTGCGGCCACGAGGTGGCA
TCTCAAGATGATGGGTAATGGAAACAAAAAGGGTCATTAAAAGTGCATCG
ATCGCTGTTCTTGGAGCCGCCGAGGTGCTCGGGTCGAGCGCAATCTATTT
CTGCGATGCCAAGTTACTTGCAGCGAAATGCTCTCCAGCAGTATATTGGC
AGATTTTTTATTTTCCTTTCCCGATATAGCTCTAGTCCTGCAGTAAGCCC
CACCGCTAGGGTTATACCCCGTGCCTGGCAACAACAACAAACAACAGTAG
GCTTCGCATGGGTTGCCGGTATACATTAACATGGGATTATTTTCATTACA
TTATTATTGCATATATATGCCAAGATTCTGATATGTGATGTATTTAGCAT
CATCTACACGTCAAGTATCCGTTCTATGTGCTGGCCAACGGCTACTATAA
TACCAGTAATAACACACGACATGTATACCAGTATGGTGCTGATATCGTAG
GCACTAAATGTTGCTGGACGAACCCGTCCACTGAATGAACTATAAATGCT
CGTACAACGTGAAATACTATTGTTCACATCAAACTTTACTATGTCTGCTG
GTGATTCGTTGTACCTTTTATGTCTTACTGTCCCCAACATCATCATGCGT
GAACCAGGATGACTAGGATGACCGCGGTCCTTCTAATATGCTTGGCGCCC
TCCGTACTAGCAGCTTCTCCACCAGCAGGGTCCCTGCGGAGGTCTCAGGT
CAGTCCGCTCTCCCTTCACCCCTTTTCAAGGCAGTCACTACATAAACTAT
ATAAACCACTACTACTACTACTACACAAACTAAAAGAGAAACGTGAAAGG
GGCGGAAGCGAAGCTCCACGAAATCACATGCGGTAGACTTGCTCGACTCA
GTGACTCTACATTTTGTACGAGAGAGTACAGTAAATATTTTTCGACAAAT
CAACCAAAAAGCATCTGATCGACCGTGATAAAAGTTTGTCACTTTCTGCT
CTGGAGATAGGCTTCCATTACCTACAACCACACATAGTAGAGGTACTGTA
TCTTATGCTTCCTCCGCTTCCTTGCATGTACGTGCTCCCTGCTACTACGT
ACCGTACTCGTAAATATCAATACTGTCTATCAACAAGTGTTGTGTGTATA
CTTCAATTGGTATACTTTAGTAGTTCACGTATTCTTCGGGTGATGAGGAA
ATAAATGTACCTGTTTTACAAGCGGCCTCGGACCATCATTTATTTTTGCA
CAAAAGGGGAACTTTATCCGGCGGGTCGCCCAGAGCGGTAACGGTCGGCT
GCTGCCTTATGACTGGTACCACCGTGTGTAGTGTTTATTGCCCTACAGAC
GGTACAAAGGGCGACACAATACACACTACACACTACACTATACTACTGTC
TGAACAACATAAATAACCAGTCACCGCACACATAGTACTACTACTACAAC
AGTAGCAGTCGACCTAGTAGTAGTATTATTATTAGTTGTAGTAGTAGTAA
TAGTTGTAGTAGTAGTAGTAGTAGAGTCATCAGTACTAATGGTATTATTA
ATAGTATAGTAGTGTCGAGTTCATCCCTAATCGTATATCGTATATCGTAT
TATAACAAAAGCAGGGCGAAAAGTCCGCTGCGGTCTCATTCGACTGCTGC
TGCTGCTGTGTGTAGTTATCTGCTATCCAAAAAAATAAATCAAATACGCG
CAAAAAAGTTAACCGATCGGGCCTCAACCATACCCAGTAAAATACGTGAT
AGCCTATCCGATACACACGTGATCTGCTGGACAGGGAAATATCAAAGGAA
CATCTACAAAGCTCCAACGAGAGAAAAAATATATAAATAATAAATAAAAA
GGCAAAAATGACAAAAAGAAAGAAAGAAAACAATACGTTAACGTCAATGC
CAGGCAGGGAGCGATGGATGGGCTCGTTCGTGCGCGAGCAACAGGAAACA
TGTATTATTTGGAAGAAAAATCTGAACGCATCTAGACCTTCTGAGGATCC
CACACAGGGGGGGGGGGATGTCAAAACGCTTAGTAGGTGGGATCGTAATA
GGCTGCAAAGTTAAAGACAAAACTTCTTCATGGCATTCAAACGGGTTCCC
CAGTGTTGTTGTGGTAGTAACGTTGGGTCCGTATTGTTATTATTATTGTT
TCAAAAGAATTAATTTCCAGATCCAGATCCCCTCAAAAAGACAAAGAAAG
AACATAATAGGGGGGACACGAAGCGTTCGAGTAGGCACGGGGTTGGTAAC
AACAAGCAGCGCGTGGACTGTGACCCGCCGCTCGGCAAGAGGACGGAGAC
CATGTGCCATGATGGGGAAGGTTGTTACTGTATAATATATAATATATAGT
ATGAAGTGATCCGAGAGGGGAGGGATTTCTTTCCCCGCCTCTCTCCCCAA
AATACAATACAACATATTATTAATATACTACTGACACTGATATAAGATGT
CCTGCTCTATCTATCTAGTGTACGCCGTAGTATGACATTTTCTGACAATC
TTTGAACCTCGCCCCGGTAGCTCAGAGGTACCTCGTAACCCTCTGACACG
TTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAAAAAAC
TAAAAAACTAAAATAAAAATGCCCAACGGGTGGAGAACGATTAAAAAATC
GTCAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTG
AATCCTTCTCGCGAGAAAAATTAAGGTACGCACCGCAGAAAAGAAGGTGG
ATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTC
CAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACACACATTATAG
AACAACCGAGTACCACGTGCCACCATCAATTGCAGGTTCGTCCGGGAGGA
TGTCGTTGTTGTTGATTCACACATTCAGTGTATTGTCCGTGTGTGTGTGT
TTTCTTCCCATTCATTCATTCTGGACATCAAGTTCGTTGGACGTACCAGC
CGGGGTCACACAGGAGAAAGGTCACACAGGATTTCTCATCCACCTTCTTT
CTGCGTTGCGTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCATTCCTT
TCCCTCGTCGATCGTGAAGTCGAGTTTTTGTGTACTAACGATTTAATCGT
TCTCCACCCGTTGGGCATTTTTATTTTAGTTTTTTAGTTTTTTAGTGAGA
AAAATCCCGTTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGAGGGTT
ACGAGGTACCTCTGAGCTACCGGGGCGACCGGCTTTGTCCGTGCAACTGA
AGAAACTACGGTGACACAACAAGTCAGCCATAGACCTATCAAATGCCAAT
CCCGCTTGTGGCCACAAAGAGATACTAAGGTCAACGGGTCACATCATGGG
GACAACCCGCTCCTTGGGAAAACTACTGAAATTTCCATATATAACTCTGT
ATAGTGTTGTCTGAACATACTTGAAAATATGATATGTCCCTTTTTCCGAG
TAGTTTTGTATCATTACCATTTTCTCTTTGTATGGAGAGTACTATTACCG
TCGTACTACGTTGTCCCCTTCCGGATGGTGTTTTTCCACCTTGTGACCAC
GGGCTGTTTTTTTACATCATAATCAGCTTATTATGTGAGAATGTAATAAA
TCAGTCAATCAAGCTATATTTACGAGCACAGTACTTACTAAAATTTTGTC
TGTTGGGCTCTACGTACTGCATGTAGATTGGAACAACAACTAATAATAAT
AATAATAATAATAATATTAATATGCTATTATTATGATGTCTGTAGGTATT
GATAAAAAAAAATACCAGGTATGTTTTAGTTGTAGTTTCACACAGTCGTG
GTAGCGTGTGTGTGTGTGTGTGTATGTATTTATTAAATTGCACATAACCG
CGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCC
TCCCAAGGGGGGATCAATGATACTTGTGTGTGTGTGTTGTGTGTGTGTAT
TTATTAAATTGTACATGACCGCGCAATCCGGCCCTGTCATCCTAGTCATT
CTATGCCACTCGCATTGATCCTCCCAAGAGGGGAGTGTGTGTGTGTATTT
ATTAAATTGCACATAACCACGCAATCCGGCCCTGTCATCCTAGTCATGCT
ATGCCACTCGCATTGATCCTCCCGAGGGGGATCAATGATGTTGTGTGAAA
ACACTGTGTGTGTGTATTTATTAAATTGCACATAACCACGCAATCCGGCC
CTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGG
ATCAATGATACTTATTACGAAAACACTGTGTGTGTGTATTTATTAAATTG
CACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTC
GCATTGATCCTCCCAAGGGGGGATCAATGATACTTGTTACGAAAACCTCT
GATCAAACGCGACAAAGGGGACACACTCTCTCTACTTGTGTGTGTGTGTG
TGTGTGTTATTTATTGATTTGCACATAACCGCGCAATCCGGTTCTGTGAC
CTTATAGTCAGTCTATATGCCACTCGTTATGGCCCTCCAAAGTGTGTGTG
TGCTCTTCATATTATTAACCGATCGGGCCTCAACATACCCAGTAATATAC
GGGTAACACACAGTCTTAAAATAGTACTGTTGCTGTAAATATCCGGCTTG
GGGAATCGTAAAACAGAACTAACCTCGTAGTCATACAGCACGCACACTAC
AACCCCTATTTTTATTATTTTGTAACTGTACATATTATGTGCATGGGCAC
CATTAAAAATGACACGGTAAAAAGTCCCTGCGGACTTGTTGTATAACGTA
AATAAATGTACATCTCTTCAACAGTTACAATCATAATAAACATGTAACGA
TGGCCCTATTATCGTATATTATTACTAACAACCTACTTAATTATATGTAC
TACAATGCTTTTGTTTTGTTTTTGTCTGGTGTTCCTGCATGGCGATTAAT
GTAAGTGTACAGCATAACGGTGGGTTTCTCCCCGATATTATACTGTTGAC
CCAATAGTATTACCATCGGGAAACCTTGGGGTGGATGCTCAGAAGATTTA
GATGCGTTCAGATTTTTCTTGAACCCGTTCAAATGCCATGAAGAGGTTTT
ATATTTTCAGCCTTTGATCCCACCTAAGCGTTTTGACATTTTCCCCCCTG
ATTCAGACTGGAGGATGCTCAGAAGGTCTAGATGCACTCAGATTTTTCTT
TAAAAACTGACTTGGAATGGGAAGAAAACACACACAAGGAAAGGAAATGT
TCGTTCCTGCCACTGGATGCAACAAATAATATTATACTTGTCTTGTTTGT
TGTGGTCGAGCTGTCGCTGCTATCAAAAACTTTCAATAGACTGCCAATTT
TATTCCACGAAACAAATACTTTTTGCTACTACGGCACCTACTACTAATAT
ATAGTAGGACGATCTAGGGGGATTTTTTTTTTCGTGTTTTACGCCAAAAA
AACTATAATTCGAAAACGTTACCAGCTTACTACCAGGTAGATTCGAACAA
CAGTATGTAGCAATAGCTCTATTATAATGTATAGTAGTAGTTCTTTATCT
TTATCTGAACGATGATGGAGCAACGAAGAGGTTTCGACAGCAGCATTAAA
TCGTTTGTCGTGTTCATTATTATGTTATTTGTATTGTGCCCCTGCCCTGC
TGTGTTCGTTACACAAAACGATTGTATATAATACACTACCGCCATTTCGC
AACGCGCGGCAATATAGGAAGATACCGAGGCCGCCGGCGTTGCGCCCCGC
CGCCTTTCGACGAGTGACTTGGAGCCTGCCGAAGACGAAGAGGGATACTA
TGCTCACCTCGGGTGATGAGTAGAAAAGGTCGCGACCCACCCATCCACTT
GTCGTGAAACTACTGTATATATATCTTCCTTCTCTGCCGCTTGAAGTCTC
CAGCACGGGGTCTCATTGTTCAGTAACATACACTTGGTCACTGTAGTCAC
ATAGCAATGTCTTCTAAATACCGCCCTTACATCATTGGTAAACATGTTTT
CACTCTCATAGAGGTCTCAATGTACAACGCTACGATGAGGTGCGCCTTGA
CGTTGATATCGTGCTGTGTCTCTGTTGTCCCATTGAGCAACGTTTCACTT
GCGGCGACACCAGTATATCCCCTCAGCGATGCAGAAGCTTTGACGTTTTA
CTTGCGGCGACACCAGTATATCCCCTCAGCGATGCAGAAGCTTTGATTCC
GCTCTGCAGATTGCTCCCTACCTGATCGACCTTAATGTGACAACCCAGGT
TTCGACATCTAAGGTTTCCGGTATGCCACGTGGGTTTTGTTGGCGGAGCA
GGTGTTACATGGACAAGAAAGACGATAGGGTTCTGGGGATGAAGCTGGCG
CGAGACGATATAACGGCAGAGGTGAAGAGGAGGGTTCTCTTGTCTACAGT
TGTTCATTTGAGATTGAATTTCCCTAGAGCTTCCGCGACGATACATAGTC
GAGAACAAAACGCTGTAGGCATCCGCCTTGACTCATTTATTCGACCGCGC
TCTACCATTTTGCCGATGGCTTGGTTTGCTTGTAACTGTTGATGAAACAG
CTGTGCCACGAGTACTGCAACGTTAATGGGGCTTTCTACATGGCGACACA
GTTCGGAAATGAGTGCTTCTGCAGCCGCGAAGGGGATCTCGACTTCGACC
GCCATGACGTCGGGACGTGCGACAAGCCCTGCGCAGGCGACGACGTGAGT
TGGTCTTGCCCTGCAGTTAAGACTATTGTAGCGCTCACAAGACCGATTCC
CGCTTGCCTCATTTGATGCTCATAAAACGTAATCCTACCTTTTATTTACG
ATAGATCGCGTCCGACCGTTGCGGTTCAACACCCCCTCCACTTCACTGCA
GACTCTCCAAATATTTCCGTTTGACGTACACCTGCTCTCATTTTATACTT
CAGCTTGCACCATGGGCCCAGGCCCTATCGTATCGTTCGGCTCCGTGCTC
CCATATCCTGACCCCTCCCTCCCCCTGCGCTCCTCTCCCTCGCCTCGGTC
TCATGTACACAATTATTTGGTGATTGTCCTCACGTGGCGCAGTCCGAGCG
GTGCGGTGGGTACTATGCCTTCGACCTGTACGAGCTTGTGTGGCCGGACA
CGCCAACGGACCTTGAATACGTGAGAACTATCTACAGTATGTAAAGGGTT
GGCACTGTAAGCCTGCTCGTATGGGGTTGACTTATAAATAGTAAGCAAAT
GATGTATTTCTACAGTGACTCGATTCGTTTGATGTCGGGAAAACACGTGT
GACAAACAAAAAATACTAAAAAGATGTCCATAATTATCGATGACGATCGC
GCTACAGGGTGTGATGGCGATGGTGCCGACAGATGCATTTTTCACCACCT
CATGGCGCCGTTACTGGGAACGCGTGATACTCTGCTCCCACTGATGTACC
AGTAGATGGATTGCTACGCCGATGACACAGAGGAGAGAGTGATGTCCAAT
ATCTACATCAGTGACGACATGACGTCCGCTATATGCCGTGATCACTGCAA
GGACAAGAATGCCTTATACTACGCCACCCAGGTACAGTAGGCCCTAAGAC
TAGTCCTCATGTGCGTAGTTCAAATAAATGTTTCCGGTCATTTTGAGAGG
GGAGTCTGGGATGGTGGGAGATCATTTCTCTTCGCTGCCCCCAACTTTCC
TGTGCTTGTCTTCTCAATCTGACAATATTTTCCTAACATTCCGTCGTCAT
AATTCAAACGACAGTATGGCCACGAATGCTGGTGTGGAACCTCGGACGTG
TTCGCCGACTACGAAAAATACGGCAAGGGGGCCTGCCACATGCGTTGCGC
GGGCGACACATCGGCCGCGTGCGGTGAGTTTGTTCGTTAGGATAGTTTAT
GTTGAGCAATAGGGGAGAATCATGGGACAACTGTGATTCTCTAGGGGGTT
AGTTACTCCGCTTATACAGTACTGTAGGGTCCTATCATCATGTATGGTAA
TGCCCTTCTTGTCGTCAGTCTTTCCTAGAGCTAGTACCAAGTACTTTTGT
CTCTTGGTGTCTATTGAAACCCGATTGTGTTTTCCCCAATGTCATGCTAT
TAATACAATACGATCTACATATCATCTTCTCCAAGACTTTAAGACCTTCC
CTCTGGCGAATGAATCAATACACTAGTGTGGAGACATCAAAACAACACTA
GTGTCCTCGGTGCTGAGGTTTCCCTAACATGCCACGGAAGGATTGCGAGG
CTGTCCCTGAGGGCAATTGCCCCATCCCCCAGCAAGAAGAATTTGGGTCT
GGTGAACCCACGCTGGCGGATATGTATCGACTTGGTGAAGAAAGATTCGA
TAGAATGGACAGCTATTCCGATCGATGGAACAGGAAGCTGGACGAGATTT
CAGATGAGACGAGAGTGATGGACGAGCATGTAACAAGCCTAGAGCATGGC
GATCGGCAGCCACGTCTTGCCATGAGGGCAGATGGGCACGCAAACACCAA
GACTCAAGAGCGCACGGAGGGCGCCACTACAGCAGTACAAGCGATGCGTG
GGGATAGCTGTACTACTAAAGAAAAGGTTCAAGATGGACCGAAGACCTCG
ATCACTTTCGGCATGGAAGCCGAACCTCCCGATCTCCCTTGCAGGGATGA
CGTTTTGGTCGAGGGCGGCGATGCCGCACCCAGGTCGTGTCTCCCATCCT
TGGAGATGCGCTCACCAACAGCCGCCGTTGGCTTAGTTCCCACCGGCGAA
GCCTCCACAGCCACGGAGACCACCTCCAAGGAGCCACTTCTTTGGTTCTA
CGCGACCGAGGAGATGAATCCAGAGGAGGACTCGAAGATGGACAAATCAT
GGACTTTGACTCTATACGCCTCGTGCGACAGCATCAGTTTGGAGACTGCT
TGCTGCTCTCTACTGCCGGAGGGTCGTTGAGACTAAATCCAGGCAAAAAA
GGACTTTTGATCCAGGCGGTTCACGAGGTCACCTCCGCGCCTGCCCGTTT
TGGGGATCGTGGTGCGCGTTGGTTCGTGGTGAGGTTATACGTGCTGGAGC
AGCCGGGTGATGAGCTGCAGCGTTTTATCAGAAGAGGTTCGCTGGCTCTC
TGAAACAAGGCCGGCACTGATGCCGTGCAAGAAAAAGTCAAGCCGTCTAG
AGCGGCTCGAGGTGACGAGTCGGAAGAACGGAGGTCACGTCGTCGAAGGC
GACTCGAGGTGATTGGAAGAGGGGCGAACGATTATCAAGGAAAGCTATGG
AGCGAGGAGCGTCTTGAAGTCATCAGCTTGACGGCAACTTCGCGGAGAGG
ACTCCTGCTTTCTGGATGTCAGGTCTTCATGGCCATCAGACTCTTTCCTT
CGCTGTATGGTATGCTGATAGGTGTACTCGTGTGCTGCTGTGTGTAGTAC
AGTAATATGATATGTGACCCTTGTATGCGTTTGGTAAATCGCTTAAGTAG
CCTCCCCCTTCCCTTGAAATGCTGTTCTCTCAGGGAGGGCAAGTCTATGC
GGACTCGTAAATTGCGGTAGGTGATAGTTTGGGGAGGGTCGTAACGCTTA
TGATCGTTCGTAGTAGTGCCTCAAGACTGGACTGAACCGTTAGACTATAC
AGTACTACCGTAAATTATCAATACCTTGTCTTCCCCGCGAGCAAAGCACG
TGTACTTTCGGAAGCAATTTGCATTCCCCAAATTATTCACGTAGGGCTTG
TTCGCACAGCATGTTCGTTCAGGTGTGCCCTTTCGGACTCGCGCAGCAGC
TTAGTAATGCTTGTATTGGGAGGGATATCGTTCACGACCGCTTGACCGCT
TATGCCCGCGACACGTGTAGTGAGACGTTTTTCCCAAGAGATAACCTAGC
ACGGCGTGCAAGGGGTACCGTTTGTACCGAAATCTTAAAACAAGAATAAT
CAGTGCTGAATTACAGTGCCATGTTTGCTTGAAGCATTTGGTAATTTGCC
TGTTTTTGACAGCCAGATCAAGTAGTACGCCGCATAGCCCTGTTTTTCTC
TCGCGATGCAGCTAGTCATTCACGACGAGTGTTTTGACTCTGAATACTCG
ACTGCCTGATTACCTTAGTAGACCAATGTGCAGACTCTGTAGGGTTGCCC
ACGATGGGCCATTTGAAAAACAATGGCATCCCTTTTCTCGCGACAAGAGT
ACTGTATTCTAAGGCTACGCTCTCTAGAGAGCGCTGTTTCAAAGTTCTAC
AGCACTTGAGTAGCTCGACTGAAACTTGTGAAGTAGTATTGCCTCTGAAT
GCTCGTTCGCCTGATTCCCCATAAGTCTGTCTATGATCATTGTTCGGAAT
TCAGCAGCACTTGAATAGTCAGAACTGGCTTAAGCCTTTCACCTTGGCAA
CTGTTTGATCAGCGTGTCGGCAAGTCGCTCAATCAAGCAGACAGACGTTG
GCAGCCTTTATTTCAAAAATTTGATTGAAAACTCGCGACCACGTATCGTA
TTCTTCTAGCATATCCGCATACTATTTGCCAATGCACGAGAAACGATGTA
GTAGTGTTGCGTACAAGGAGATCTTTCTTGGCTGAAATACTGTTCCGCTT
TTTTGGAGTTGAACTATCTAAGAGTCAATTGCACTGACTTTTTCATCCGT
TCCGTATTTTCGAACATAAGAGATAACTTTGCTAGGAACCAGTAGCTTAA
AGTTGGAAGTTTCGCTTTTGGGGCGCATAAATCAAGGAAGGACTTTCCCA
TGCGCTTTAAAATTTGAACATGCAGTGCTCGTAGACACCTGTGATGTTTT
TTGAAAATATCTGAGGTTCTAAAGGAGGTAGCGGGAGAGTGTTTTTCCCC
ATCTTGTAGGGATAAATTGACTGCTATCTGATCGCCTTCCTTTCTCTAAT
ATGTTAGTCTTTACTGACACAAAATGATATATGAGAGGGTGTTCGTTAGG
ATAGCTTATATTGAGCAGTAGGGGAGAATCATGGAATGAATATGATTCTC
TAGGGGGTTAGTTACTCCGCTTATACAGTACTGTAGGGTCATGTCATCAC
GTATGGTAATGCCCTACTTGCCGTCAGTCTTTTCTAGAGAGCTAGTACCA
AGTACTTTTGTCTCTAGGTGTCTATTGTCACCCGATTGTGTTTCCCCCAA
TGTCATGCTATTAATACAATACGGTCTATATAATATCCTCCAAGGCTCCA
GAGACCTTCCCTCTGGCGAGGGTGCATCAATAGAGTTAAGCTCTATTATC
GTAGAATTTACCCCGCTCCCTTTCACGTTTATATAATTCTTTGCGTCGCC
TTTTGTCGCATGTTCAACTCGAACCCTGCCGAACATACCCCCTCTACAGA
CGTGCGGATCTCAAAGTTCGTGCGCTTTGCTGATGCTAAAACCTCTTACC
CGCCCCGTTGGCTCTATGATAATTTTTAAGGTGGACGCTATGCCTTCAGC
CTGTACCGTTTAATCGACGAAAGTCCCGAGCCGGCACCTACGCCTGAGCC
GACCCCCGAGCCTACCCCAGAGCCTGCTGCCGAGTCTACAGCGGAAGTCG
GATCTGTCAATAATGAAAAGGCGGAGTACCCTTTCGACGGTACTACCTTC
TCCGGTGATGGCACCTACTACGGGAAGACGTCGAACGGCAACTGCGCCAT
CCGCTCGCCGATCCCCAGCATGTATGACGGTATGATTCCAGGTGAGAAAC
TCAAGCTCATGCTGACTCCTTCTCTGTGGGAAGCGCGTGATCGCGTACGC
CGTCAGAGTCGTTTAACGAATGGGGGGGGAGATGATGCAAACTTGTCCCC
CTTTCGGGAGTAGACGGCACGAAAATAGCCCCTCCTGGGGACACACATGA
CCAATTTCCTTTTGAAAAGAGTTCGATTCGGAGCAAGCTTACCGACGATG
TAGGGGATCATGTAGCCCTTAACCCTGTAGGCTGTTCTGGTGACATCCCC
GGGACGGAATCGTCAAATTCCCCATCCCTCCGAATCGTTGAACGACTCGT
CATACAGGTTTTTCTCTGTTACAGTCCTTTGTAAATCGCGAAGTCGGCAT
CCCGCCACCTCATTTCTTAACCCCCTCCCCCCTTCCTCCTTTACTCCTCC
TCCTTGGTCCATCATTCATGTTTGCGATCTCGCAGTTGCGCTGAACGCTG
CCCAGTACGGTGGTTCGGAGTTGTGCGGCGCCTGCATCGAAGGCGAAGGA
TCAGGAAATGGCGCAGGCAGTGATCCCATCACTGGATCCTTCAAGGTGCG
CCATGGAAGCGTCGTCGTCCGGGATCTGTTGCGATTCGATGGACGTCGTG
TTTTCCCTTGATATTTATTAGAGAGGATCGTGTCTCTGCTCGTTTTTAGA
CATGAAAGTGTTCATCTGGGCGTCTTTTTCTCTCGTCAATCTCTTTAAAG
TGGGTCCGAAACGTGGCAAAGCAAGCATGAGTGTATATGGTGTTTATCTG
AGAACCTCGGCCGAATCGTCGTAGATAAGTGAACGCCGCCAGCTGGCGGA
AGAAACGCTGTACTCGACACAACTGTCTCCGAGCACGCTTGGTATATCAA
CCCTACCCAACACGCTCTCTCTTATCTAAACTATGGGCGCGACGACCTCG
CTTCAGGCGTACGTGATGGACAAGTGTCCCGAGTGCGCGACTGGTGACCT
CGACTTCTCCAAGAGCGGGGATGGCCGTTGGGATATTTCCTGGAAATTTG
TGGAGTGCCCCGGTTCCGATGCGCCAAGCTTCATCTTCGAGGGCAGCCAC
CAGTTCTACTGGAAGATCCAGCCGCGTGGGACTAAGACTCCTGTGGTGGA
GCTGACGGTAGATGGTGCTTCGGGATCCAAAACCGATGACAACTTCTTTG
AGGTCCCCGGCGCTCCGTACCCTCTCTACGGGGCACAGAGGGTGAAGACG
ACGACCATGATGGGCAAGACAGCGACGCAGGAGGTCTCCTTGTAAATGGT
TGTTTCATCTCGTGATTGAATAAAGAAAGGCGTTTTCATGTTAAGAAAAT
GCGAATCATTTCCACGGTGCTATCGATTGTGTTGCTTTCACTGCTACTGC
TGCTGCAAACGTATACTTCACGGCGGGAGTCGCGTTGTCGTTGATGAAAT
TGTGGCAACGCCATAGGAGGGTTGTAATCGGTTTTTATCATCGGCCCCGC
CGGGAGCGACCATTGCTTCCCTGGAGGTGGTGGGCGAAGTTTTAGCGGAT
CTATATACGTTTGCTTTGAGGTCTTGAGAGGTTTACTGATTTTTCACCAG
GTAGTGCCGTAGTCGTCTTGGCCTTTCTTCGCTTTTTTCCACTTGGCGGT
AGCCCAAGTTTGCTACGTATTCGCGCTGCTCCTTCGCGGGATATAGGCCG
AAAGTTCGCGCATGAACATACGTATTTGTTATCCGCGAGACGCATGGTGT
ATACGTACGCTCGGTAGACATTTTGCGCATTTGCTCACGTACCAAACACG
AACTTGTATACTGTGCAGTAGGCGCCGCTCCCGTCTTGCCAAGCGCACAT
CTCGGTGTGTCGCTCCTCACGACTTCGTTAGTTGTCTGTGGGTATCTTAG
ATCCGTTAACGACAACCTCACGTATGACTTGCTGGGGATTCAAATACTCC
AGGGTAGAAGACATTGGGCTTTCACAGGGCTAAAGTTTTTGTAGTACGTG
GGAGAAAAAAAATTACCTGGTTCACTTGTGTAGCTTTTTGTTTACTTTGG
AAACCGTCAGAGGAAATGGACACGACGGCGCCCGAGCGTTACATATTTGC
CCAGTCGCCTTTGTGTGCAGTAGTGTAATGTGTACAGTTCAAGGCTGAAA
ATACTGTATGGCGGTTGTTGCTCCTAGCGTGCCCGTAGATCGCGGTATCA
CCCGGAAAACGTCGTGTCACAATGATACTGTGCCGTACACTCTCTTCGTT
GACTCCATACGCGTGATGATTCGTAATAAGCTCATTTGTGCCCTTTCGAG
CTAAAGTTTTACTTGTGACTTGGGATAGAAGAGAATAGTGGCGAGTGATT
CAGGTGATTGGTCTATCGTCTACATTTGTTCGTTGCCGTGACACCGGTTT
CATTTTTTAATTTTGTCGCTTTTGAGTTTGTTGACATTGTGTACGTTTGT
GACTGCAATAGGTTTCTGTTAGGCGCGGCAATATGTTGTTCGATCAGATA
GTCTTAAGAGGTTCCAGGGAGCTATCGATTGTTTTGTACGAGGAAATGAG
AGCGTGTTGCCAGTCGACCTTACATGGGAGGGAGGGGAGCCGTGTCTGAG
GACGAAGTAATACACATCTTGCTGAGACTCACGCTACACGTCTTCCCACA
CCAACGTCATCGGCTGTTTCCCAGTATCATGCCAACCACAAGTTAGCACG
TAGAAAAAGCTTGTGCGATGAAGCCCATTGTATAGCACATCAACGATGCG
CCGTCAAATTTATGTTTCAAGGCATAAGGTTAAAAGTGAGCGGGGTATTT
CTCAAGCCTGTGCAGGGCAACTTACGTTGATATTTGAGCTCCCAGTTGCC
CCATCTTGGAGCAAGGAATATTGTTGATTACTCGGTATAAAAAGATGAAA
TCGACGAATTTGCCTTCTTCGTTGAGACGCAGCTTCAATACTCCGCGAGA
GATGCATCCTCCGTTCACGTCATCAACTAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1142:167091..182470-

>mRNA_A-nodosum_M_contig1142.5.2 ID=mRNA_A-nodosum_M_contig1142.5.2|Name=mRNA_A-nodosum_M_contig1142.5.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at A-nodosum_M_contig1142:167091..182470- (Ascophyllum nodosum dioecious)
ATGACTAGGATGACCGCGGTCCTTCTAATATGCTTGGCGCCCTCCGTACT
AGCAGCTTCTCCACCAGCAGGGTCCCTGCGGAGGTCTCAGGAAGATACCG
AGGCCGCCGGCGTTGCGCCCCGCCGCCTTTCGACGAGTGACTTGGAGCCT
GCCGAAGACGAAGAGGGATACTATGCTCACCTCGGGTGTTACATGGACAA
GAAAGACGATAGGGTTCTGGGGATGAAGCTGGCGCGAGACGATATAACGG
CAGAGCTGTGCCACGAGTACTGCAACGTTAATGGGGCTTTCTACATGGCG
ACACAGTTCGGAAATGAGTGCTTCTGCAGCCGCGAAGGGGATCTCGACTT
CGACCGCCATGACGTCGGGACGTGCGACAAGCCCTGCGCAGGCGACGACT
CCGAGCGGTGCGGTGGGTACTATGCCTTCGACCTGTACGAGCTTGTGTGG
CCGGACACGCCAACGGACCTTGAATACATGGATTGCTACGCCGATGACAC
AGAGGAGAGAGTGATGTCCAATATCTACATCAGTGACGACATGACGTCCG
CTATATGCCGTGATCACTGCAAGGACAAGAATGCCTTATACTACGCCACC
CAGTATGGCCACGAATGCTGGTGTGGAACCTCGGACGTGTTCGCCGACTA
CGAAAAATACGGCAAGGGGGCCTGCCACATGCGTTGCGCGGGCGACACAT
CGGCCGCGTGCGGTGGACGCTATGCCTTCAGCCTGTACCGTTTAATCGAC
GAAAGTCCCGAGCCGGCACCTACGCCTGAGCCGACCCCCGAGCCTACCCC
AGAGCCTGCTGCCGAGTCTACAGCGGAAGTCGGATCTGTCAATAATGAAA
AGGCGGAGTACCCTTTCGACGGTACTACCTTCTCCGGTGATGGCACCTAC
TACGGGAAGACGTCGAACGGCAACTGCGCCATCCGCTCGCCGATCCCCAG
CATGTATGACGGTATGATTCCAGTTGCGCTGAACGCTGCCCAGTACGGTG
GTTCGGAGTTGTGCGGCGCCTGCATCGAAGGCGAAGGATCAGGAAATGGC
GCAGGCAGTGATCCCATCACTGGATCCTTCAAGGCGTACGTGATGGACAA
GTGTCCCGAGTGCGCGACTGGTGACCTCGACTTCTCCAAGAGCGGGGATG
GCCGTTGGGATATTTCCTGGAAATTTGTGGAGTGCCCCGGTTCCGATGCG
CCAAGCTTCATCTTCGAGGGCAGCCACCAGTTCTACTGGAAGATCCAGCC
GCGTGGGACTAAGACTCCTGTGGTGGAGCTGACGGTAGATGGTGCTTCGG
GATCCAAAACCGATGACAACTTCTTTGAGGTCCCCGGCGCTCCGTACCCT
CTCTACGGGGCACAGAGGGTGAAGACGACGACCATGATGGGCAAGACAGC
GACGCAGGAGGTCTCCTTGTAA
back to top