mRNA_A-nodosum_M_contig1139.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1139.16.1
Unique NamemRNA_A-nodosum_M_contig1139.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1139.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1139contigA-nodosum_M_contig1139:112103..112774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866541.5643628-CDS-A-nodosum_M_contig1139:112102..1122161680866541.5643628-CDS-A-nodosum_M_contig1139:112102..112216Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 112103..112216 -
1680866541.5768175-CDS-A-nodosum_M_contig1139:112621..1127741680866541.5768175-CDS-A-nodosum_M_contig1139:112621..112774Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1139 112622..112774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1139.16.1prot_A-nodosum_M_contig1139.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1139 112103..112774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1139.16.1

>prot_A-nodosum_M_contig1139.16.1 ID=prot_A-nodosum_M_contig1139.16.1|Name=mRNA_A-nodosum_M_contig1139.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
GLLVARPYGACASNKINKALGKDAFRKIRDARQYMDRVDMPLRSRRFDEV
TEMLENGPSAGLETSLVDLVKSNVLPSEDKVAVGTIRR*
back to top

mRNA from alignment at A-nodosum_M_contig1139:112103..112774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1139.16.1 ID=mRNA_A-nodosum_M_contig1139.16.1|Name=mRNA_A-nodosum_M_contig1139.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at A-nodosum_M_contig1139:112103..112774- (Ascophyllum nodosum dioecious)
GGTTTGCTTGTAGCTCGCCCATACGGCGCGTGCGCTTCAAACAAAATCAA
CAAGGCATTGGGAAAGGACGCCTTCCGCAAAATCAGAGACGCCAGGCAAT
ACATGGATCGTGTGGATATGCCTCTTCGATCAAGAAGATTCGACGAGGTT
ACGGTACGTTAGACTTTTCGTCACGAGGACTGATCATGATGCCAGGCTCG
ACAGGCACAACTTAATTTTGTACCAGTACAACCCAGTAAAATCCCACATA
AAGAGTTTAAAGAAAAATCAGAACGCACCTATTATAGACCTTCTGAGCAT
CCCCCAGTCAGGGGGATTTTTTTTTGGTCCATACAGCCTATGTTCCCACC
CAACCCTTTTGACGATATCTCCCCCCTGATTGGGTGGACTAGACTAGAAG
GTTTACATTCGTTTAGACATCATTTTTCGTAAGTGTAGAACTGCTGCTGT
CGAAGAGCTACAAACATATATTATGCACAAAAAAAAATCGTTCGATAGAG
ACAGGGCTTTACGTGCACAAGTCTCTCATGACGCTGTCTCGCGGACTGAA
AATTTCAGGAGATGCTGGAAAATGGACCTTCCGCAGGGTTGGAAACGTCC
CTCGTGGACCTGGTGAAGTCGAACGTGCTGCCTAGCGAGGACAAGGTCGC
TGTTGGAACCATTCGGAGGTGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1139:112103..112774-

>mRNA_A-nodosum_M_contig1139.16.1 ID=mRNA_A-nodosum_M_contig1139.16.1|Name=mRNA_A-nodosum_M_contig1139.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1139:112103..112774- (Ascophyllum nodosum dioecious)
GGTTTGCTTGTAGCTCGCCCATACGGCGCGTGCGCTTCAAACAAAATCAA
CAAGGCATTGGGAAAGGACGCCTTCCGCAAAATCAGAGACGCCAGGCAAT
ACATGGATCGTGTGGATATGCCTCTTCGATCAAGAAGATTCGACGAGGTT
ACGGAGATGCTGGAAAATGGACCTTCCGCAGGGTTGGAAACGTCCCTCGT
GGACCTGGTGAAGTCGAACGTGCTGCCTAGCGAGGACAAGGTCGCTGTTG
GAACCATTCGGAGGTGA
back to top