mRNA_A-nodosum_M_contig1136.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1136.4.1
Unique NamemRNA_A-nodosum_M_contig1136.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1136.4.1 vs. uniprot
Match: D7FYY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.110e-9
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:    5 MEAGVLQRQVENVIPQISWTPDFVRSLNDLIYGKQTEWETWGSGHLRSRE 154
            ++AG   + V +VIP  SWT  F +S   L+YGK T+WETWG GH+  R+
Sbjct:  127 LDAGEYFQLVTSVIPYESWTSPFHKSFYSLVYGKHTDWETWGKGHMTVRD 176
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1136.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYY9_ECTSI7.110e-948.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1136contigA-nodosum_M_contig1136:44622..45363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.5220332-CDS-A-nodosum_M_contig1136:44621..446971680866540.5220332-CDS-A-nodosum_M_contig1136:44621..44697Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1136 44622..44697 -
1680866540.5366316-CDS-A-nodosum_M_contig1136:45285..453591680866540.5366316-CDS-A-nodosum_M_contig1136:45285..45359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1136 45286..45359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.5487154-UTR-A-nodosum_M_contig1136:45359..453631680866540.5487154-UTR-A-nodosum_M_contig1136:45359..45363Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1136 45360..45363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1136.4.1prot_A-nodosum_M_contig1136.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1136 44622..45359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1136.4.1

>prot_A-nodosum_M_contig1136.4.1 ID=prot_A-nodosum_M_contig1136.4.1|Name=mRNA_A-nodosum_M_contig1136.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MEAGVLQRQVENVIPQISWTPDFVRSLNDLIYGKQTEWETWGSGHLRSRE
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mRNA from alignment at A-nodosum_M_contig1136:44622..45363-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1136.4.1 ID=mRNA_A-nodosum_M_contig1136.4.1|Name=mRNA_A-nodosum_M_contig1136.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:44622..45363- (Ascophyllum nodosum dioecious)
TGTAATGGAGGCGGGAGTTCTTCAACGGCAGGTGGAGAATGTCATCCCGC
AAATTTCCTGGACGCCCGATTTTGTAAGGTAAGTGGGATCGCCCGAAGAT
TGGCCCCCTTCTTGAAGGTCGAGCCCTGCACCTACCCTTGGCCCAGAGGT
TCCTCCAATTTTAACAAGACCCGCTAGGATAGCCTTTCAAAATAAATGTT
GGGCGAAACACTCACCCCTGCTGGAGCGGGGGACTGTGTGTGTGTGTATT
TATTAAATTGGTGTGTATGTGTGTGTGTGTTTCATTAATTAATTAGCATC
GACCACACTATCAGGATGACCAATGAAAACACGTCAGTCTCCGCGGGTTT
CAAAATGAAAGAACACTTCCCCTACCGGGGGGTGGATCATAAGGTTTAGG
CGCGTTCGCATTTTTCTTTAAACACTTCCGAAGGACTACGACCCGGGGCA
CCGTGAGGTGTGTGTGTGTGTGTGTAAAGCTGCACGCATTGTGGTTTTCG
TCAAAACGCACGCGAATGGTCTAGTCGACTTCCAAGTGTTCAGATTGCTT
AGGTGGCGAATTCGTTCTTTCCGTCTTTCGCATCTTGCCCTATACATGGC
TGCATGTATGTAATGGCCATTTCACACCAGTCTAACATTTATCTATTTCA
TTGCGCCTGCACGCAGGTCTCTCAACGACCTCATTTACGGTAAACAAACG
GAGTGGGAGACGTGGGGATCAGGCCACCTCAGATCCAGGGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1136:44622..45363-

>mRNA_A-nodosum_M_contig1136.4.1 ID=mRNA_A-nodosum_M_contig1136.4.1|Name=mRNA_A-nodosum_M_contig1136.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:44622..45363- (Ascophyllum nodosum dioecious)
ATGGAGGCGGGAGTTCTTCAACGGCAGGTGGAGAATGTCATCCCGCAAAT
TTCCTGGACGCCCGATTTTGTAAGGTCTCTCAACGACCTCATTTACGGTA
AACAAACGGAGTGGGAGACGTGGGGATCAGGCCACCTCAGATCCAGGGAA
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