mRNA_A-nodosum_M_contig113.83.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.83.1
Unique NamemRNA_A-nodosum_M_contig113.83.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig113.83.1 vs. uniprot
Match: D7G1B2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1B2_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.470e-18
Identity = 83/194 (42.78%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:  571 PLNEPWPLDRE----SRAGSAAQLPPRSVREASDASSTMSTAHTLLAMVTPRAWRS---------GEW-VSTEDGERAGTGDTADGDDEPNGICYTAAYKGDEEET-----IAESLASDDAY--GDVFATAAPSPVS--LKLPTLIAGSSTIVTHSTLGRMERALSKFHRGYNWYLLFSTYRDGASYATMYNNI 1083
            P  E W   RE    + A +AAQ   R V E +      STA   L+MV P  WRS         GE  V   DG R   G +      P G        G  EET     I  SLA D +   GD     +P P    L+LP L+ G STIVTH+TL RME A  K HRGYNWYLL+ST+RDGASY T+YN I
Sbjct:  307 PPAEMWAGTREDPGNAAAFAAAQSAARDVSEVAQ-----STAQAFLSMVKPSYWRSDSEGGGGPAGESPVGFGDGRRGERGGSDRWVSVPGGA-------GSFEETASSGPILHSLADDASLFPGDPGVRPSPPPAEAPLQLPGLVCGGSTIVTHTTLARMEAAQPKHHRGYNWYLLYSTFRDGASYTTLYNRI 488
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1B2_ECTSI3.470e-1842.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:716008..719292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1B2
PFAMsELMO_CED12,RUN,RhoGAP,TLD
Model size1085
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.69e-19
EggNOG OGsCOG5142@1|root,KOG2372@2759|Eukaryota
Descriptionnegative regulation of peptidyl-cysteine S-nitrosylation
Cds size1083
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.2425854-CDS-A-nodosum_M_contig113:716008..7160451680866527.2425854-CDS-A-nodosum_M_contig113:716008..716045Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 716009..716045 -
1680866527.254927-CDS-A-nodosum_M_contig113:716652..7168301680866527.254927-CDS-A-nodosum_M_contig113:716652..716830Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 716653..716830 -
1680866527.2663498-CDS-A-nodosum_M_contig113:717932..7184601680866527.2663498-CDS-A-nodosum_M_contig113:717932..718460Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 717933..718460 -
1680866527.2742937-CDS-A-nodosum_M_contig113:718952..7192921680866527.2742937-CDS-A-nodosum_M_contig113:718952..719292Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 718953..719292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.83.1prot_A-nodosum_M_contig113.83.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 716009..719292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.83.1

>prot_A-nodosum_M_contig113.83.1 ID=prot_A-nodosum_M_contig113.83.1|Name=mRNA_A-nodosum_M_contig113.83.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=361bp
IPNDQTAVITGADAEDAVTVTATATENAAGASSPAPRLDVQPHPEGDEVT
NALRPALAATAGNSVGFPALKTVAPTSVTTIATANSFSGVAAPQGEEDLG
STDGVDLEAATPSGETDNPQLDELVISRAFGQPSDASSSSAATTGVSIRN
ALRFMFSPSPSVASKGGCEILSENSSSNAVAIDNGAIIQPPLNEPWPLDR
ESRAGSAAQLPPRSVREASDASSTMSTAHTLLAMVTPRAWRSGEWVSTED
GERAGTGDTADGDDEPNGICYTAAYKGDEEETIAESLASDDAYGDVFATA
APSPVSLKLPTLIAGSSTIVTHSTLGRMERALSKFHRGYNWYLLFSTYRD
GASYATMYNNI
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mRNA from alignment at A-nodosum_M_contig113:716008..719292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.83.1 ID=mRNA_A-nodosum_M_contig113.83.1|Name=mRNA_A-nodosum_M_contig113.83.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3285bp|location=Sequence derived from alignment at A-nodosum_M_contig113:716008..719292- (Ascophyllum nodosum dioecious)
ATCCCCAACGACCAAACCGCAGTCATCACCGGCGCCGACGCTGAAGACGC
TGTGACTGTCACCGCGACTGCCACTGAGAACGCCGCTGGTGCTTCTTCCC
CCGCGCCGCGGTTGGACGTCCAGCCGCATCCCGAGGGAGACGAAGTGACG
AACGCCCTGCGACCGGCGCTTGCTGCTACTGCCGGGAATAGCGTTGGATT
TCCGGCCTTGAAAACAGTCGCACCGACGTCCGTGACAACGATCGCGACAG
CAAACAGCTTCTCGGGCGTCGCAGCGCCACAGGGCGAGGAGGACCTTGGC
TCGACGGACGGGGTCGACCTCGAGGCGGCAACCCCCTCAGGTAAGAAGAC
ACGGCGGGAAGGAAAAGGATGCGTTGGTGCCGACGGCCCCTCGCAGGAGG
ATGGCCCAACGCGCCGGAAAGCAGGGGCAGCGGGTGATGAGTGACGAGTT
AGAGGTTATGATGTGCACACCAAGCGCAAGTTGATGCGTTTTGCCGCGCA
CGCTTGTGGAAAACCTATCAGAGGCAATCGGACGTAGTAAGTGGTGCGGA
TGATTTTGACGGGATAACGGGGAGAAACTTCCCCCTTCCCCTCCCCTCCC
GCCCGCAAGCACCTAGGAGTCATTTTGGTTTGGTCTGCTTTATTTTTATT
GTTCATTTTTTTTGTGGAGGCGTTGTGAAAACCCTCGAGGCCCCACTCCT
CTGAAAAATCCATGCTCGTCCGATAGTACTCCCCCGTATACTTGTCGTTT
TGTCTGCTCTTGCCGATTGCTTATTTTTTTCTTGTTTCGCTATTGTTTTT
TTTTGTTTTATTTGGGGGGGGGAATAACACAGGAGAAACCGACAATCCGC
AGCTGGACGAACTCGTGATATCCCGCGCATTCGGCCAACCTTCGGACGCG
TCCTCTTCCTCGGCGGCAACCACTGGGGTTTCCATACGAAACGCCCTCCG
ATTCATGTTCTCTCCGTCGCCGTCGGTGGCCTCGAAGGGCGGCTGCGAAA
TCTTGTCGGAAAATTCCTCTTCCAATGCCGTGGCGATAGACAACGGGGCA
ATAATCCAGCCCCCGCTGAACGAACCGTGGCCCTTAGATCGCGAGAGTCG
AGCGGGTTCCGCCGCGCAGCTTCCGCCGAGATCCGTTAGGGAAGCGTCGG
ACGCGTCCAGCACCATGTCGACGGCACATACGCTGCTGGCCATGGTGACG
CCTCGCGCGTGGCGGTCCGGGGAGTGGGTGAGCACGGAGGACGGTGAACG
CGCGGGGACAGGGGATACAGCTGACGGGGACGATGAGCCGAACGGCATCT
GTTACACTGCAGCGTACAAGGGCGACGAGGAAGAGACGATCGCGGAGTCG
CTGGCGTCAGGTACTGCTACCAACGCGATCAGTCTTCGGCGGTTTGCGGT
ACCTTGCTGTGCCGCCTCGGATGTTTCTTGGAAGGCTCCTGAGCGCGCGT
GGTTACGATCTGGAGTAGAGCTTGCTGTGTTTGGTCGGTGTAATGTGCCC
CCACGCCCACCGCCCCTCGCCCCCCCTAGAGTTTAACGTGGCAGATGCAG
CGAAGAGGGGGGAAAACGCTGCGAATATGGACAGATCGGTCTGGGTCGAT
ACGATTTTATTTAAGTTTCAAAAAAGAGAGCGAGGCTTGCTTGGTTCGCC
GGTTCGCGCTCCCTTGTACTGTGAAGTCTTGCCTGGTCGAGAGACAGTGG
AGGGGGCGTGGGTGTGTTTTGACCATGTGGGTCAAGTCTTGCGCCAGGCT
GTGAGCTCTGCCTCCAGCTGGGCCGGCTTCTTGCCTTCCAACGTGGGGCG
CGCGCTGGATAGACAGGAGTTCGTAGACAAGAGGATGGCGCTTTCTTCTT
GACTCTGTTATCACATATTCTGCCGATGGAGAGGGGGGGAGGGGGGGCAA
TCAACTTTGTTCATCTCTCCCTCCACCTCTGACCATCTTGAATCTCCCCG
GTTCACGTTCACATGCCAAGACACAGTGTGAATGTTATATTAATAGTGCA
TTTTTCTTTTCTTTTCTTTTTTAGTGAACATGAGTTTCGGCACACACATT
CCCACGACTCGCCAGCCATATATATAGGCTCTATGGCTGATTTCTTTGCG
ACTCGCCAACCAATGGCGGTGAATAAATTATTTGCGAATGAAACGTGGCC
GTATATAATGTGTAATAGTTACCGTAATGTTGAAGGGAGCTTCGACAACG
CCGCCCATTCGGTTTTCAACTCTTCCCCTTATCCCCTTGATTAACACGGA
AGCGTATTTCGAACCCTCCACATTTTTGCGACGACGCTGGCAGCTGTGTT
GCCCTTGGCATCCGAAAATCGCTCTGGCTGCCGCTGGAGATTGACAGGAA
CACACCGTACCAATCCAATCCCAACATTCCACCCTCCTGTATTAAAGTAT
ATATTTCAATTCTACTCTCCTCGCCCCGGCCCCCCCCCCCCCCGCGTGAC
GGCCGTTTCAAGACGACGCTTACGGTGACGTCTTCGCCACGGCAGCCCCC
TCCCCGGTGAGCCTAAAGCTTCCGACCCTTATCGCCGGCAGTAGCACCAT
CGTGACGCACTCCACCTTGGGTCGGATGGAGCGAGCGCTCTCGAAGTTCC
ACCGAGGGTACAACTGGTACCTCTTGTTCAGCACCTATCGGTGAGGGCAA
GAGAGCGAGCCGCCGCCGCCGCGTGCTTTCGGGTGTGTAACCTTTCTCGC
GCGGTGACGGGAGGTCAACTGTTTTGCTGTATTCGTTTTTTAGCGGGACG
AAGGTGCGGGGGGCAGGGGAGGGGAGAGGGGAATCTAATGCCTGTAGCAA
CCGGAGATGTCTTTAAAGAAAAATCTGAACGCATCTAGACCTTCTGATGT
CTTGTTTTGGCTCTAGCTTTAGCTGCGTCGGGCACTTTTGACAGAACGCC
GGTAAGACAGCCCGAGATACGAATACAGCAGGCGTACCGCTCTCGCCTTC
TGTCTTCGATGGCGCTTCTTTGTGTGGTGGTTCCTCTCTATCTCGTTGTG
TGCCTCCCCCCCACCAACCACCCCCTAAATATGCTGGTTCGAGAGTGAAA
GCTAGCTTCGACCTATGGCGTATATAATAGACTGATTTTGCTTCTTGAAA
ACTTTGTCCTCGACTTGGTGTATGGATTTTGAATTTAGTGGGATGCAATC
CCGTTCCCGTTCGTGCCAATGTATTTTGGACACCCCTCCACCCCAGCCCC
CCTCTTTCTCCCCTCTCTGACACACGCGCGCGCGTTTGGGGGCGCAGGGA
CGGCGCGAGCTACGCCACCATGTACAACAATATCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig113:716008..719292-

>mRNA_A-nodosum_M_contig113.83.1 ID=mRNA_A-nodosum_M_contig113.83.1|Name=mRNA_A-nodosum_M_contig113.83.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1083bp|location=Sequence derived from alignment at A-nodosum_M_contig113:716008..719292- (Ascophyllum nodosum dioecious)
ATCCCCAACGACCAAACCGCAGTCATCACCGGCGCCGACGCTGAAGACGC
TGTGACTGTCACCGCGACTGCCACTGAGAACGCCGCTGGTGCTTCTTCCC
CCGCGCCGCGGTTGGACGTCCAGCCGCATCCCGAGGGAGACGAAGTGACG
AACGCCCTGCGACCGGCGCTTGCTGCTACTGCCGGGAATAGCGTTGGATT
TCCGGCCTTGAAAACAGTCGCACCGACGTCCGTGACAACGATCGCGACAG
CAAACAGCTTCTCGGGCGTCGCAGCGCCACAGGGCGAGGAGGACCTTGGC
TCGACGGACGGGGTCGACCTCGAGGCGGCAACCCCCTCAGGAGAAACCGA
CAATCCGCAGCTGGACGAACTCGTGATATCCCGCGCATTCGGCCAACCTT
CGGACGCGTCCTCTTCCTCGGCGGCAACCACTGGGGTTTCCATACGAAAC
GCCCTCCGATTCATGTTCTCTCCGTCGCCGTCGGTGGCCTCGAAGGGCGG
CTGCGAAATCTTGTCGGAAAATTCCTCTTCCAATGCCGTGGCGATAGACA
ACGGGGCAATAATCCAGCCCCCGCTGAACGAACCGTGGCCCTTAGATCGC
GAGAGTCGAGCGGGTTCCGCCGCGCAGCTTCCGCCGAGATCCGTTAGGGA
AGCGTCGGACGCGTCCAGCACCATGTCGACGGCACATACGCTGCTGGCCA
TGGTGACGCCTCGCGCGTGGCGGTCCGGGGAGTGGGTGAGCACGGAGGAC
GGTGAACGCGCGGGGACAGGGGATACAGCTGACGGGGACGATGAGCCGAA
CGGCATCTGTTACACTGCAGCGTACAAGGGCGACGAGGAAGAGACGATCG
CGGAGTCGCTGGCGTCAGACGACGCTTACGGTGACGTCTTCGCCACGGCA
GCCCCCTCCCCGGTGAGCCTAAAGCTTCCGACCCTTATCGCCGGCAGTAG
CACCATCGTGACGCACTCCACCTTGGGTCGGATGGAGCGAGCGCTCTCGA
AGTTCCACCGAGGGTACAACTGGTACCTCTTGTTCAGCACCTATCGGGAC
GGCGCGAGCTACGCCACCATGTACAACAATATC
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