mRNA_A-nodosum_M_contig113.67.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.67.1
Unique NamemRNA_A-nodosum_M_contig113.67.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:589816..590426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.2045493-CDS-A-nodosum_M_contig113:589817..5900231680866527.2045493-CDS-A-nodosum_M_contig113:589817..590023Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 589818..590023 -
1680866527.2168972-CDS-A-nodosum_M_contig113:590296..5904261680866527.2168972-CDS-A-nodosum_M_contig113:590296..590426Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 590297..590426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.67.1prot_A-nodosum_M_contig113.67.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 589818..590426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.67.1

>prot_A-nodosum_M_contig113.67.1 ID=prot_A-nodosum_M_contig113.67.1|Name=mRNA_A-nodosum_M_contig113.67.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=112bp
EPTTATPEPTPSTPEPSAATPEPTLATLEPTTATPEPTTATPEPTTATPE
PTTVTPEPTTETLEPTAATPEPTVATPEPTVETPEPMAATPEPTPMTPEP
TVASPEPTSGTP
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mRNA from alignment at A-nodosum_M_contig113:589816..590426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.67.1 ID=mRNA_A-nodosum_M_contig113.67.1|Name=mRNA_A-nodosum_M_contig113.67.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=611bp|location=Sequence derived from alignment at A-nodosum_M_contig113:589816..590426- (Ascophyllum nodosum dioecious)
GAGCCAACTACGGCGACACCTGAGCCGACACCGTCGACGCCCGAGCCAAG
TGCGGCGACGCCGGAACCCACCTTAGCAACGTTAGAGCCCACCACTGCAA
CGCCGGAGCCTACCACTGCAACGCCGGAGCCTACTACTGTGACGCCGGAG
CCAACCACGGAGACACTTGAGCCGACCGCGGCCACCCCGGAGCCAACCGT
GGCCACCCCAGAGCCAACCGTGGAGACTCCCGAGCCTACGGCGGCGACGC
CCGAACCAACTCCGATGACGCCTGAACCGACTGTGGCGTCGCCGGAGCCA
ACTACGGCGACACCTGAGCCAAGTGCGGCGACGCCGGAACCCACCTTAGC
AACGTTAGAGCCCACCACTGCAACGCCGGAGCCTACCACTGCAACGCCGG
AGCCTACCACTGCAACGCCGGAGCCTACTACTGTGACGCCGGAGCCAACC
ACGGAGACACTTGAGCCGACCGCGGCCACCCCGGAGCCAACCGTGGCCAC
CCCAGAGCCAACCGTGGAGACTCCCGAGCCTATGGCGGCGACGCCCGAAC
CAACCCCGATGACGCCTGAACCGACTGTAGCGTCGCCGGAGCCCACTTCA
GGGACACCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig113:589816..590426-

>mRNA_A-nodosum_M_contig113.67.1 ID=mRNA_A-nodosum_M_contig113.67.1|Name=mRNA_A-nodosum_M_contig113.67.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at A-nodosum_M_contig113:589816..590426- (Ascophyllum nodosum dioecious)
GAGCCAACTACGGCGACACCTGAGCCGACACCGTCGACGCCCGAGCCAAG
TGCGGCGACGCCGGAACCCACCTTAGCAACGTTAGAGCCCACCACTGCAA
CGCCGGAGCCTACCACTGCAACGCCGGAGCCTACCACTGCAACGCCGGAG
CCTACTACTGTGACGCCGGAGCCAACCACGGAGACACTTGAGCCGACCGC
GGCCACCCCGGAGCCAACCGTGGCCACCCCAGAGCCAACCGTGGAGACTC
CCGAGCCTATGGCGGCGACGCCCGAACCAACCCCGATGACGCCTGAACCG
ACTGTAGCGTCGCCGGAGCCCACTTCAGGGACACCT
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