mRNA_A-nodosum_M_contig113.57.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A6H5KW94_9PHAE (HELICc2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW94_9PHAE) HSP 1 Score: 242 bits (618), Expect = 1.110e-67 Identity = 207/489 (42.33%), Postives = 255/489 (52.15%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAANPNLKHVDTITAA---PSGPTRLQPQLQPSHARLAAAAGARGALTSGTGSRPDLASKQDVGDIVDSL--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASFVGSAGGGEEAEEPSESGCGVVKLDVGGRRICNGVGASS----------SNSSELRG-GKGWESVPLSQRLARVG----AKSASTGISTSGVGGGARPKRQSPGRANSNKNLSGRATGLG-EGVIGVVGRSGAGGGIGAEGGDTFGLFSSSNGSKHGGDGCSKEIFSKNTARHGTPPLPSEASDAVEIPEKGGSGRDHQENDARSSALP-----RGGGGSSTQNGSIRRQKLEAFLSDLRKGISRGAYDVFRSRAKAMKQEGALDAAETALPALKGVLEVLLLAPPELMLPRRFAQHIPEEHENIYAALLAKKCPG 1389
ASRAVNQAIGRVIRHR D+GCVVLCDSRFAE+RNR+SLSLWARPFVRECSGFG+VAADLT+FFKACAANP LKHVDT A+ P+ P+ +PQ S + + A AR A G G P +S QDVGDIV S+ XXXXXXXXX AS+ + GG +++ S + E RG G GW+SVPLSQRLA A + G +T G G +P +Q GR GLG + +G + S +G S + SK R G D IP GSGR R G GSS RR++L A L +L++ ++ GA+++FRSRA+A+K GALDA +TAL ALKGVLEVLLLAPPEL LP+RFA IP+E+ YAAL+A++C G
Sbjct: 223 ASRAVNQAIGRVIRHRLDYGCVVLCDSRFAEDRNRKSLSLWARPFVRECSGFGKVAADLTKFFKACAANPRLKHVDTPRASKPTPAAPSHGRPQPPSSSSXXPSYARARPAAALGPGGLPPSSSLQDVGDIVKSVVGDPGGGTRQRVVXXXXXXXXXSTPAAPLGLLDALKASWRSTDGGAVVSDQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRADEARGSGGGWDSVPLSQRLATASVEGKASGGAAGAATPGTTG-VKPTKQXXXXXX--XXXGGRLCGLGGQRTVGXX--------------XXXXXXXXXDNSVARAEGSS--VSSKPRPRPGVG-----VEDRRPIPRSAGSGRADNSGGXXXXXXXXXXXXRAGVGSS------RRRELAAVLVELKRNVAPGAFELFRSRARALKAGGALDAPDTALDALKGVLEVLLLAPPELKLPQRFAPSIPDEYVADYAALVARRCDG 681
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: D8LG75_ECTSI (HELICc2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG75_ECTSI) HSP 1 Score: 168 bits (426), Expect = 7.450e-44 Identity = 93/135 (68.89%), Postives = 106/135 (78.52%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAANPNLKHVDTITAA---PSGPTRLQPQLQPSHARLAAAAGARGALTSGTGSRPDLASKQDVGDIVDSL 396
ASRAVNQAIGRVIRHR D+GCVVLCDSRFAE+RNR+SLSLWARPFVRECSGFG+VAADLT+FFKACAANP+LKHVDT A+ P+ P +P L PS + + A AR A G G P S QDVGDIV+S+
Sbjct: 150 ASRAVNQAIGRVIRHRLDYGCVVLCDSRFAEDRNRKSLSLWARPFVRECSGFGKVAADLTKFFKACAANPSLKHVDTPRASKPTPAAPNHGRP-LPPSLSSSSMYARARPAAALGPGGLPPSPSLQDVGDIVESV 283
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A6A4W3C5_AMPAM (Regulator of telomere elongation helicase 1 homolog n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W3C5_AMPAM) HSP 1 Score: 87.4 bits (215), Expect = 1.520e-14 Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKAC 198
ASRAVNQA+GRVIRHRRD+G V+LCDSRF + LS W RP++R + FG V +LT+FFK+C
Sbjct: 691 ASRAVNQAVGRVIRHRRDYGAVILCDSRFGDAGFSGQLSAWVRPYLRVHANFGTVVRELTQFFKSC 756
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: UPI0018859A0E (regulator of telomere elongation helicase 1 homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018859A0E) HSP 1 Score: 85.9 bits (211), Expect = 3.430e-14 Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAA 204
ASRAVNQA+GRVIRHR D+G V+LCDSRF + LS W RPF++ S FG V +LT FF+AC A
Sbjct: 520 ASRAVNQAVGRVIRHRTDYGAVILCDSRFGDPGFSGQLSAWVRPFLKVHSAFGPVVRELTGFFRACEA 587
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A0D2WMW4_CAPO3 (DNA helicase n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMW4_CAPO3) HSP 1 Score: 86.3 bits (212), Expect = 4.060e-14 Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAANPNLKHVDTITAAP 246
A+RAVNQAIGRVIRHR D+G ++LCDSRFA L LW RP+V+ C FG A L +FFK A+ +L H AP
Sbjct: 762 AARAVNQAIGRVIRHRSDYGAIILCDSRFAAPGTIAQLPLWVRPYVKTCKNFGDSLAQLAQFFKTAKADVSL-HAKPAAGAP 842
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A7S2JVL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVL8_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 8.210e-14 Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAANPNL 216
A RAVNQA+GRVIRHR D+G ++L DSRF + RNR+ +S W RP ++ G GR + L RF++ ++P L
Sbjct: 145 AHRAVNQAVGRVIRHRFDYGAIILMDSRFGDARNREGISKWVRPAIQADEGMGRAISGLARFYREAKSDPEL 216
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A433Q1I5_9FUNG (HELICc2 domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q1I5_9FUNG) HSP 1 Score: 81.3 bits (199), Expect = 9.620e-14 Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKA 195
A RAVNQAIGRVIRHR+D+G ++LCD RFA LS W RPFV+ C+ FG +T+FFK+
Sbjct: 127 AIRAVNQAIGRVIRHRKDYGAILLCDERFASPAIISQLSGWVRPFVKVCNNFGEAQGQVTKFFKS 191
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A7R9BPB7_9CRUS (DNA helicase n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BPB7_9CRUS) HSP 1 Score: 84.7 bits (208), Expect = 1.210e-13 Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAANPNLKHVDTITAAP 246
ASRAVNQAIGRVIRH D+G ++L D RFA+ ++LS W RP ++ C+ FG + + +FFKA +NP LK AP
Sbjct: 654 ASRAVNQAIGRVIRHANDYGAIILADCRFADPNFIKNLSSWVRPRIKVCNDFGSAISGIVKFFKAAESNPRLKKTTERAYAP 735
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A6J0BLI5_NEOLC (Regulator of telomere elongation helicase 1 homolog n=10 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BLI5_NEOLC) HSP 1 Score: 84.3 bits (207), Expect = 1.500e-13 Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAAN---PNLKHVDTITAAPSGPTRLQPQLQPSHARLA 300
ASRAVNQAIGRVIRH+ D+G ++LCD RF R+ LS W +P +++ + FG + DL FF+A + PN+K T+++ P +H+R+A
Sbjct: 684 ASRAVNQAIGRVIRHKNDYGAIILCDCRFENPGFRKQLSAWLQPHIKKFTNFGMITKDLREFFRAAERDLPQPNMKEAATMSSLDFFPRTSDGAFGETHSRIA 786
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Match: A0A3P3YME7_PLABS (Helicase ATP-binding domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YME7_PLABS) HSP 1 Score: 84.3 bits (207), Expect = 1.520e-13 Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 1 ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSGFGRVAADLTRFFKACAANPNLKHVDTITAAPSGPTRLQPQ 273
A RAVNQA+GRVIRHR D+G ++LCD RF+ ER++ LSLW R FV+ CS F A + +FF+ C P AP T QP+
Sbjct: 631 AYRAVNQALGRVIRHRNDYGAILLCDQRFSGERSQGYLSLWLRHFVKVCSNFQASVATIEQFFRQCDTRP--------AVAPQASTGAQPK 713 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig113.57.1 >prot_A-nodosum_M_contig113.57.1 ID=prot_A-nodosum_M_contig113.57.1|Name=mRNA_A-nodosum_M_contig113.57.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=463bp ASRAVNQAIGRVIRHRRDFGCVVLCDSRFAEERNRQSLSLWARPFVRECSback to top mRNA from alignment at A-nodosum_M_contig113:498910..501671+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig113.57.1 ID=mRNA_A-nodosum_M_contig113.57.1|Name=mRNA_A-nodosum_M_contig113.57.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2762bp|location=Sequence derived from alignment at A-nodosum_M_contig113:498910..501671+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig113:498910..501671+ >mRNA_A-nodosum_M_contig113.57.1 ID=mRNA_A-nodosum_M_contig113.57.1|Name=mRNA_A-nodosum_M_contig113.57.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1389bp|location=Sequence derived from alignment at A-nodosum_M_contig113:498910..501671+ (Ascophyllum nodosum dioecious)back to top |