mRNA_A-nodosum_M_contig113.54.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.54.1
Unique NamemRNA_A-nodosum_M_contig113.54.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: D8LG75_ECTSI (HELICc2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG75_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.940e-44
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 AVMEEYDARIESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            AVMEEYDA+IE+TGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMD KV+LKKKYMSE+ LPPGV RVTG EWYQQQA
Sbjct:   67 AVMEEYDAKIENTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDPKVVLKKKYMSESLLPPGVARVTGNEWYQQQA 150
[Close]
BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: A0A6H5KW94_9PHAE (HELICc2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW94_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.470e-42
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 AVMEEYDARIESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            AVMEEYDA+IE+TGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMD KV+LKKKYMSE+ LPPGV RVTG EWYQQQA
Sbjct:  140 AVMEEYDAKIENTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDPKVVLKKKYMSESLLPPGVARVTGDEWYQQQA 223
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BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: A0A836CNR1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.710e-26
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 AVMEEYDARIESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQ-QARGIGFCL 273
            A M  Y+  + + GGA F AVCRGK+SEGMDFSD +ARCVV+TGIPYAP  D KV+LK++YM E P P G  +++G EWY Q  AR +   +
Sbjct:  594 AAMRAYEDALAARGGAAFFAVCRGKLSEGMDFSDDKARCVVITGIPYAPVKDPKVMLKRQYMDETPAPQGCAKLSGSEWYAQCAARAVNQAI 685
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BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: W7U1C1_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1C1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.070e-22
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   16 YDARIESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYM-----SEAPLPPGVQRVTGQEWYQQQA 252
            YD  I+  GGA+ LAVCRGKVSEGMDF+D RAR VV+TGIP+ PA D +V LKK Y+     S A +P  +Q + G EWYQQQA
Sbjct:  674 YDGAIKEEGGAILLAVCRGKVSEGMDFADQRARAVVITGIPFPPARDPRVGLKKMYLDSLASSPASVPSSIQPLRGMEWYQQQA 757
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BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: A0A5D6XGF1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGF1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.690e-22
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    4 VMEEYDARIES-TGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            V++EY   I + T GAVF AVCRGKVSEG+DFS+ + R VV+TG+P+ P  D K++LKK  + EA +PPG  ++TG +WY QQA
Sbjct:  599 VVDEYHEAIRTNTNGAVFFAVCRGKVSEGIDFSNDKGRAVVITGLPFPPTKDPKIVLKKSILDEAVVPPGELKLTGNQWYIQQA 682
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BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: K3WZ70_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ70_GLOUD)

HSP 1 Score: 97.8 bits (242), Expect = 9.320e-22
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    4 VMEEYDARIES-TGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            V++EY   I++ T GAVF AVCRGKVSEG+DFS+ + R VV+TG+P+ P  D K+ILKK  + E  +PPG  ++TG  WY QQA
Sbjct:  557 VVDEYHETIKTNTNGAVFFAVCRGKVSEGIDFSNDKGRAVVITGLPFPPTKDPKIILKKSILDEVVVPPGELKLTGNHWYIQQA 640
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BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: A0A2P4YET9_9STRA (DNA helicase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YET9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 9.320e-22
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 AVMEEYDARI-ESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            AV++EY   I ++  GAVF AVCRGKVSEG+DFS+ + R VV+TG+P+ P  D K+ILKK  + EA +PPG  ++TG  WY QQA
Sbjct:  576 AVVDEYHQAITDNPKGAVFFAVCRGKVSEGIDFSNNKGRAVVITGLPFPPTKDPKIILKKSILDEAVVPPGELKLTGNAWYIQQA 660
[Close]
BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: W2PIE2_PHYPN (DNA helicase n=12 Tax=Phytophthora TaxID=4783 RepID=W2PIE2_PHYPN)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 AVMEEYDARI-ESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            AV++EY   I ++  GAVF AVCRGKVSEG+DFS+ + R VV+TG+P+ P  D K+ILKK  + EA +PPG  ++TG  WY QQA
Sbjct:  578 AVVDEYHQAIADNPKGAVFFAVCRGKVSEGIDFSNDKGRAVVITGLPFPPTKDPKIILKKSILDEAVVPPGELKLTGNAWYIQQA 662
[Close]
BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: A0A8J5IT16_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IT16_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 AVMEEYDARI-ESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            AV++EY   I ++  GAVF AVCRGKVSEG+DFS+ + R VV+TG+P+ P  D K+ILKK  + EA +PPG  ++TG  WY QQA
Sbjct:  553 AVVDEYHQAIADNPKGAVFFAVCRGKVSEGIDFSNDKGRAVVITGLPFPPTKDPKIILKKSILDEAIVPPGELKLTGNAWYIQQA 637
[Close]
BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Match: G4YUL1_PHYSP (DNA helicase n=6 Tax=Phytophthora TaxID=4783 RepID=G4YUL1_PHYSP)

HSP 1 Score: 97.1 bits (240), Expect = 1.740e-21
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 AVMEEYDARI-ESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMDAKVILKKKYMSEAPLPPGVQRVTGQEWYQQQA 252
            AV++EY   I ++  GAVF AVCRGKVSEG+DFS+ + R VV+TG+P+ P  D K++LKK  + EA +PPG  ++TG  WY QQA
Sbjct:  582 AVVDEYHQAITDNPKGAVFFAVCRGKVSEGIDFSNDKGRAVVITGLPFPPTKDPKIVLKKSILDEAMVPPGELKLTGNAWYIQQA 666
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG75_ECTSI1.940e-4490.48HELICc2 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KW94_9PHAE1.470e-4290.48HELICc2 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CNR1_9STRA1.710e-2655.43Helicase C-terminal domain-containing protein n=1 ... [more]
W7U1C1_9STRA1.070e-2259.52DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A5D6XGF1_9STRA2.690e-2254.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WZ70_GLOUD9.320e-2254.76Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4YET9_9STRA9.320e-2255.29DNA helicase n=1 Tax=Phytophthora palmivora var. p... [more]
W2PIE2_PHYPN1.270e-2155.29DNA helicase n=12 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A8J5IT16_9STRA1.720e-2155.29Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4YUL1_PHYSP1.740e-2154.12DNA helicase n=6 Tax=Phytophthora TaxID=4783 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:495684..497361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG75
Preferred nameRTEL1
PFAMsDEAD_2,Helicase_C_2
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000723,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009892,GO:0009987,GO:0010569,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0032200,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0034645,GO:0036297,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048229,GO:0048364,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070716,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:1901360,GO:1901576,GO:2000779,GO:2001020
Exons3
Evalue2.27e-44
EggNOG OGsCOG1199@1|root,KOG1132@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size270
COG categoryKL
BRITEko00000,ko01000,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866532.1418784-UTR-A-nodosum_M_contig113:495683..4956891680866532.1418784-UTR-A-nodosum_M_contig113:495683..495689Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 495684..495689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866532.153973-CDS-A-nodosum_M_contig113:495689..4957581680866532.153973-CDS-A-nodosum_M_contig113:495689..495758Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 495690..495758 +
1680866532.1651323-CDS-A-nodosum_M_contig113:496515..4966021680866532.1651323-CDS-A-nodosum_M_contig113:496515..496602Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 496516..496602 +
1680866532.1776257-CDS-A-nodosum_M_contig113:497247..4973611680866532.1776257-CDS-A-nodosum_M_contig113:497247..497361Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 497248..497361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.54.1prot_A-nodosum_M_contig113.54.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 495690..497361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.54.1

>prot_A-nodosum_M_contig113.54.1 ID=prot_A-nodosum_M_contig113.54.1|Name=mRNA_A-nodosum_M_contig113.54.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=90bp
MEEYDARIESTGGAVFLAVCRGKVSEGMDFSDGRARCVVVTGIPYAPAMD
AKVILKKKYMSEAPLPPGVQRVTGQEWYQQQARGIGFCL*
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mRNA from alignment at A-nodosum_M_contig113:495684..497361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.54.1 ID=mRNA_A-nodosum_M_contig113.54.1|Name=mRNA_A-nodosum_M_contig113.54.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1678bp|location=Sequence derived from alignment at A-nodosum_M_contig113:495684..497361+ (Ascophyllum nodosum dioecious)
GCGGTGATGGAAGAGTACGACGCAAGGATCGAGAGCACGGGGGGCGCGGT
TTTTCTCGCCGTCTGCCGAGGAAAGGTCAAGACAAAAAAATAGCATGCTC
GTAGTCGTATTTATTATTACATACAGTGTATCTACCTTTCTGTTTCTGGC
GTGCTCCTTTTCCAAGGGGATATCATGAGATTGACAGGGTGCTAAATCAC
CGATCAATCGATCGATCGATCGCTTGGCGCACGAGTTGCTCGCATTCAGC
GTGCTCGGTTAACAACCCCAACAACGGCCACGTACTGTAACCACTGCAGT
GTTTGTTTGCGTACCACAGTTGTACACCGTTTTTTTTTTCTCTCTCCCCC
ACCGCGACTCAAATATAAAGAATGTCTGTGTATAAGCAACTTTTAAGGTT
TAGCTATAAATAGCTCCCCGGGCTCCCCCACACGCCTCGCCTACAAGCGG
CACGAACGAATGGTTGGGGCGATAACTCTGTTGGCCGTCGCGGTCTCTCT
GCCGAGCTGTTGGATCGATACCTTCCCCTTCCCACCGCGATTAGCGTTCG
ATACCTTATTATTAGTGTTTGTGCATGAGGCCCAGGAAAAGTGATGAGAA
ATACAGTACTTGGTGAGTGATAACTTGAAAAATAGTAACACGATAGCGTT
ATAATTCTGCTGTTTTGAAAGGAAGAGTGTTGTTAAGTAATCAAAGGGGA
GTCGTCAAGCGCTGGTCTAGCTCGAAACGTGACCGGCACACCCCGGAAGA
GCGTCAGATGGAGGTATACGCGTCTCGCAATCAGTGGACTGATAATCTGT
GCTTCGGTTGCCTTTTCGCGTGCTTTCTCCAGGTGAGCGAAGGGATGGAT
TTCTCGGACGGCAGGGCGCGTTGCGTCGTGGTCACCGGCATACCCTACGC
CCCAGCGATGGACGCGAAGGTTGGTGTTGGTCAGAAGGCCTGGCTCGATA
TAGGGCATATATCCCCGCAATCGCGGCACTTTGACCGCGGGGAGTGTTCC
GTGTTTGACTGGTCGTATCCAGGGGTGTTTTTGTAGTACCTGGTAGGCGC
CTTCTGTTTCTATGTACTGTTAACATATTTGATCGTTACCTAAAGCACGT
AAAAATGATGACGAACAAGAGTGTAATATCGTGTATTTATTTTGTTGTTG
AGGGCGATCAGCGTGGAAGCGCACCTGTCTTTAATAATGATCCCACCTAA
ACGTTTTGACATTTTTTCCCCCAGACTGGGGGATGCTCAGAAGGTCTAGG
TGCATTCAGATTTTTCTTTAAATAGCGCGGGGGGGGGGGAGGTAAGGTGA
TATTGATTAGTTCTTATGTCTAATCCGTATGTTTCCACCCAAGTCTCCAC
CTTCCAGCCCGATCTTGAAAATATGCGAAAAAAGTATGTTCGGAGAAGCC
TACAACTTGGAGGTATAGTTCAAGTACGGAATGAAATGCTTTGTTTTTTT
GCGCTTCCTCATGAAAATGTAATGTTGATAGCCGAGCATAGGAGACGATT
CGCGCGGTCGTGCTGTTTGACTCATCCCCCTCCCCCCCGCCAAAAACACT
ACCCGACCAAAAAGGTGATCCTCAAGAAGAAGTACATGTCGGAGGCACCG
CTGCCGCCGGGCGTTCAGCGCGTGACCGGTCAAGAGTGGTACCAGCAGCA
GGCGAGAGGCATCGGTTTTTGTTTATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig113:495684..497361+

>mRNA_A-nodosum_M_contig113.54.1 ID=mRNA_A-nodosum_M_contig113.54.1|Name=mRNA_A-nodosum_M_contig113.54.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at A-nodosum_M_contig113:495684..497361+ (Ascophyllum nodosum dioecious)
ATGGAAGAGTACGACGCAAGGATCGAGAGCACGGGGGGCGCGGTTTTTCT
CGCCGTCTGCCGAGGAAAGGTGAGCGAAGGGATGGATTTCTCGGACGGCA
GGGCGCGTTGCGTCGTGGTCACCGGCATACCCTACGCCCCAGCGATGGAC
GCGAAGGTGATCCTCAAGAAGAAGTACATGTCGGAGGCACCGCTGCCGCC
GGGCGTTCAGCGCGTGACCGGTCAAGAGTGGTACCAGCAGCAGGCGAGAG
GCATCGGTTTTTGTTTATAG
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