mRNA_A-nodosum_M_contig113.46.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.46.1
Unique NamemRNA_A-nodosum_M_contig113.46.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A6H5LCY1_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.220e-41
Identity = 81/128 (63.28%), Postives = 94/128 (73.44%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAY-EQTVTDLSRPR---QPKQNGTANVSGRPALPSVVIYASRTHSQLSQ 372
            MP+ +I GT V FPF PYDCQL YI GV+ ALN SKNALLESPTGTGKTLCLL ASLAWQQ+N++ +  +P     T+LAY E+ VTDLSRPR   QP Q      +   A+PSV+IYASRTHSQL Q
Sbjct:    1 MPTLEIGGTSVAFPFNPYDCQLEYIGGVLEALNGSKNALLESPTGTGKTLCLLTASLAWQQRNSAMVASKPAP---TQLAYDERPVTDLSRPRHEQQPYQENKPTTAA--AMPSVIIYASRTHSQLGQ 123
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A183RL02_9TREM (Helicase ATP-binding domain-containing protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183RL02_9TREM)

HSP 1 Score: 107 bits (266), Expect = 2.100e-26
Identity = 61/130 (46.92%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAYEQTV-----TDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQA 375
            MP   IDG  + FP++PYDCQ  Y+  V+ +LNE K+A+LESPTGTGKTLCLLCASLAW  K A++++       AT+  ++ T+     +D        QN  A++ G+      +IYASRTHSQL+QA
Sbjct:    1 MPHIAIDGVEIDFPYQPYDCQFEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAWLDKQANSVQ----LISATDTKHQNTMGKRPTSDNVDNALSHQNFLASL-GKVNNGCKIIYASRTHSQLAQA 125
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A183JF72_9TREM (Helicase ATP-binding domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183JF72_9TREM)

HSP 1 Score: 105 bits (262), Expect = 7.760e-26
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAYEQTVTDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQA 375
            MP   IDG  + FP++PYDCQ+ Y+  V+ +LNE K+A+LESPTGTGKTLCLLCASLAW  K A++++          +    T  ++       QN  A++ G+      +I+ASRTHSQL+QA
Sbjct:    1 MPQIAIDGVEIDFPYQPYDCQIEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAWLNKQANSVQSITNAKHQNTMGKRPTSDNVDNTLS-HQNFLASL-GKVNNGCKIIFASRTHSQLAQA 123
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A2H1BVS3_FASHE (Helicase ATP-binding domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BVS3_FASHE)

HSP 1 Score: 100 bits (250), Expect = 4.640e-25
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAYEQTVTDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQA 375
            MP+ +I G  + FP +PY CQ+ Y++ ++TALN S+NA+LESPTGTGKTLCLLC SLAW    +S +  +      T+   E   T+L                RP L + VI+ASRTHSQL+QA
Sbjct:    1 MPTVNISGVGIEFPHEPYPCQVEYMKELLTALNNSQNAILESPTGTGKTLCLLCTSLAWISSISSGVSLRNPSRRETDPFVEVETTEL----------------RPPL-AKVIFASRTHSQLAQA 108
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: UPI00022DC59C (putative regulator of telomere elongation helicase 1 rtel1 n=1 Tax=Schistosoma mansoni TaxID=6183 RepID=UPI00022DC59C)

HSP 1 Score: 107 bits (267), Expect = 1.540e-24
Identity = 61/130 (46.92%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAYEQTV-----TDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQA 375
            MP   IDG  + FP++PYDCQ  Y+  V+ +LNE K+A+LESPTGTGKTLCLLCASLAW  K A++++       AT+  ++ T+     +D        QN  A++ G+      +IYASRTHSQL+QA
Sbjct:    1 MPQIAIDGVEIDFPYQPYDCQFEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAWLDKQANSVQ----LISATDAKHQNTMGKRPTSDNVDNALSHQNFLASL-GKVNNGCKIIYASRTHSQLAQA 125
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A3R6XJV3_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XJV3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.140e-24
Identity = 62/129 (48.06%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQ-----QKNASAMEPQPXXXPATELAYEQTVTDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQ 372
            MP+  I G PV FPF PYD Q+ Y+  VI +L   +NALLESPTGTGKTLCLLCA+LAW+     Q  A++ +P+        + YE T    S+P     N    V+ +  LP + IYASRTHSQL Q
Sbjct:    1 MPTLQIGGIPVSFPFTPYDSQVVYMEKVIQSLEFKQNALLESPTGTGKTLCLLCATLAWRLHRLKQLRAASNKPK--------VQYETTT---SKPDDTDDNDDQGVADK--LPKI-IYASRTHSQLKQ 115
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A8J9RSI3_9CHLO (Regulator of telomere elongation helicase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RSI3_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 5.350e-24
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAYEQTVTDLSRPR---QPKQNGTANV-SGRPALPSVVIYASRTHSQLSQ 372
            MP++ + G  V FP + Y+CQ+TY+  VITAL E KNALLESPTGTGKTLCLLCA+LAWQ+ +  A +       A++  +E  V      +   Q    G A++ S  P+    +IYASRTHSQL+Q
Sbjct:    1 MPTYTLRGIEVQFPHEAYECQVTYMEKVITALQEGKNALLESPTGTGKTLCLLCATLAWQE-SLKAAKAAAAAQAASKTCFEGEVEPGHSNKSWAQMTAEGLASLHSSEPSAIPTIIYASRTHSQLAQ 127
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A6A4Z8D8_9STRA (Helicase ATP-binding domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z8D8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.910e-24
Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQ-----QKNASAMEPQPXXXPATELAYEQTVTDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQ 372
            MP+  I G PV FPF PYD Q+ Y+  VI +L   +NALLESPTGTGKTLCLLCA+LAW+     Q  A++ +P+        + YE T    SRP     N    V+ +  LP + IYASRTHSQL Q
Sbjct:    1 MPTLQIGGIPVSFPFTPYDSQVVYMEKVIQSLEFKQNALLESPTGTGKTLCLLCATLAWRLHRLKQLRAASNKPK--------VQYETTT---SRPDDTDDNDDQGVADK--LPKI-IYASRTHSQLKQ 115
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A095C263_SCHHA (Regulator of telomere elongation helicase 1 n=5 Tax=Schistosoma TaxID=6181 RepID=A0A095C263_SCHHA)

HSP 1 Score: 105 bits (262), Expect = 7.290e-24
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMEPQPXXXPATELAYEQTVTDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQA 375
            MP   IDG  + FP++PYDCQ+ Y+  V+ +LNE K+A+LESPTGTGKTLCLLCASLAW  K A++++          +    T  ++       QN  A++ G+      +I+ASRTHSQL+QA
Sbjct:    1 MPQIAIDGVEIDFPYQPYDCQIEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAWLDKQANSVQSITNAKHQNTMGKRPTSDNVDNTLS-HQNFLASL-GKVNNGCKIIFASRTHSQLAQA 123
[Close]
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Match: A0A484EEU3_BRELC (Helicase ATP-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEU3_BRELC)

HSP 1 Score: 102 bits (253), Expect = 1.000e-23
Identity = 63/127 (49.61%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:    1 MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTLCLLCASLAWQ---QKNASAMEPQPXXXPATELAYEQTVTDLSRPRQPKQNGTANVSGRPALPSVVIYASRTHSQLSQ 372
            M S D+ G PV FPF PYD Q+ Y+  V+ AL   +NA+LESPTGTGKTLCLLCA+LAW+   QK   A        P+T LAYE    D       K+N T        LP + IY+SRTHSQL Q
Sbjct:    1 MVSLDVCGIPVEFPFPPYDSQIIYMEKVLLALMSKQNAILESPTGTGKTLCLLCATLAWRRELQKKLRASNLSLTKRPSTLLAYEGYEID-------KENETQQ------LPRI-IYSSRTHSQLKQ 113
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCY1_9PHAE1.220e-4163.28Helicase ATP-binding domain-containing protein n=1... [more]
A0A183RL02_9TREM2.100e-2646.92Helicase ATP-binding domain-containing protein n=2... [more]
A0A183JF72_9TREM7.760e-2645.60Helicase ATP-binding domain-containing protein n=1... [more]
A0A2H1BVS3_FASHE4.640e-2545.60Helicase ATP-binding domain-containing protein n=1... [more]
UPI00022DC59C1.540e-2446.92putative regulator of telomere elongation helicase... [more]
A0A3R6XJV3_9STRA3.140e-2448.06Helicase ATP-binding domain-containing protein n=1... [more]
A0A8J9RSI3_9CHLO5.350e-2447.66Regulator of telomere elongation helicase 1 n=1 Ta... [more]
A0A6A4Z8D8_9STRA6.910e-2448.84Helicase ATP-binding domain-containing protein n=1... [more]
A0A095C263_SCHHA7.290e-2445.60Regulator of telomere elongation helicase 1 n=5 Ta... [more]
A0A484EEU3_BRELC1.000e-2349.61Helicase ATP-binding domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:486757..488548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6183.Smp_136280.1
Preferred nameRTEL1
PFAMsDEAD_2,Helicase_C_2
Model size383
Max annot lvl33208|Metazoa
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000166,GO:0000278,GO:0000723,GO:0000732,GO:0000781,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006282,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009987,GO:0010569,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019725,GO:0019899,GO:0022402,GO:0030554,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042592,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045005,GO:0045910,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051716,GO:0060249,GO:0060255,GO:0061820,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070182,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090657,GO:0097159,GO:0097367,GO:0098687,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902990,GO:1903047,GO:1904353,GO:1904355,GO:1904356,GO:1904358,GO:1904429,GO:1904430,GO:1904505,GO:1904506,GO:1904533,GO:1904535,GO:2000779,GO:2001020,GO:2001021,GO:2001251,GO:2001252
Exons3
Evalue2.53e-25
EggNOG OGsCOG1199@1|root,KOG1132@2759|Eukaryota,38BE8@33154|Opisthokonta,3BBTE@33208|Metazoa,3CSUP@33213|Bilateria
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size381
COG categoryL
BRITEko00000,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866531.9668746-CDS-A-nodosum_M_contig113:486756..4868611680866531.9668746-CDS-A-nodosum_M_contig113:486756..486861Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 486757..486861 +
1680866531.9786642-CDS-A-nodosum_M_contig113:487739..4878441680866531.9786642-CDS-A-nodosum_M_contig113:487739..487844Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 487740..487844 +
1680866531.9893496-CDS-A-nodosum_M_contig113:488377..4885481680866531.9893496-CDS-A-nodosum_M_contig113:488377..488548Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 488378..488548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.46.1prot_A-nodosum_M_contig113.46.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 486757..488548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.46.1

>prot_A-nodosum_M_contig113.46.1 ID=prot_A-nodosum_M_contig113.46.1|Name=mRNA_A-nodosum_M_contig113.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
MPSFDIDGTPVVFPFKPYDCQLTYIRGVITALNESKNALLESPTGTGKTL
CLLCASLAWQQKNASAMEPQPPPPPATELAYEQTVTDLSRPRQPKQNGTA
NVSGRPALPSVVIYASRTHSQLSQART
back to top

mRNA from alignment at A-nodosum_M_contig113:486757..488548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.46.1 ID=mRNA_A-nodosum_M_contig113.46.1|Name=mRNA_A-nodosum_M_contig113.46.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1792bp|location=Sequence derived from alignment at A-nodosum_M_contig113:486757..488548+ (Ascophyllum nodosum dioecious)
ATGCCAAGCTTTGACATTGATGGTACGCCTGTGGTTTTCCCTTTTAAGCC
TTACGACTGCCAACTGACCTACATTCGTGGTGTTATAACAGCGCTGAATG
AGTCGGTGAGTTGTATACGAACTACTACAAAACAAGAGTACTGTACTACT
GGTGACAGTTGGGTCGACTGGAAGTGCCTGTATGACTTATTCCGTACTAC
GTAGAGCAGCATGTAAATCGGAGGAGCTTCATCTAGAGCAGAACTACAGA
TCATACAATCTCAGTGGCTTTCGTTTGAGTTGGGGACGTTCCACAGAGCC
ATTATGTCTGAGCCCTTGATTCTATCTGCAAGAAGACAATGCCTCTGATA
TACAGTACTTGAACTTCACTCGTACCACAAGACCACTGCTGAAAAACAAA
ACAAAAAAACTTGTAGGATACATCTACCTGTAATACAGAAACAGAGCAGC
AGTACCTTGTTTTATACAGTAGCATCGTTTTACATTGGCTTGTACTGAAA
ATCCCGAACTTCCCCGTACAAGTAAATCAAGCGTATTTGAGAAGTGAATA
TCCCGGCAGGCAAGCAGCCAGCCCGCGAGGTAGGATTCAACTGCACCCGA
TCTCGCTTTTAGAAAGGCGCGGAGGGCAATGTGTATTTCCAAACACCAAA
GGTGAACAAGACAGCAGTAAGTATGTACTTTTTGTTGTTCAGCCTTGTTT
CTCGACAAAAACGCTGTTGTGAAAACATTCCGCAGCAAGCTTTCCACACA
GGCACGGAGGAAGTGATCTCGATCGATCGCCATCAGAGGTAAGCTGAGGA
AATTCCGTGTTTGAATTTGCGGAAGCTACCCGCACTCCCACGAGCCTTTG
ACCTCGTTTTAGTTAAATATTGAGCAATAATTTATGTGTTCCCTGTGTGT
GTGTTTTTTGGTACAGGTGTCTCCAATTGTCCCATTCATTGTCTCCCCCC
CTTCATAATGTTATATATACCTTTTTAAAGCAGAAAAATGCTCTCCTGGA
AAGCCCCACGGGCACCGGTAAGACCCTTTGTCTGCTCTGCGCCTCTCTAG
CCTGGCAACAGAAGAACGCCTCCGCCATGGAACCTCAGGTGAGCGTCAAC
AATCAAGGCAAGAGCGCACCGCACCGTGGCGGAACAACTGTAGCGCGAAG
GGGCTGATACTCTTTAATGTGTTAGATATATGCCGCCCAGGCACGAAGCG
CGCCTCAAAGGGAAGTAATAATCTTTCGGTGCTGGGCTCCCTTCTCGGCG
TACACAGCCTGTGTAACCGAAATCATACCATCAACAAAATAAAAGGCACT
ATTAATAGCAGAGAGTCGAGGGTTTTCATGTGGCCTAGATATTTCAATAA
CACAATCGTAATTTCCTTTCATTTTTTTTTCTCATCCGTTACCCCGTCCT
TCTCATTTTGATCCACGAGTCAGTTCCAAGGCAGAACTCTCGGTTGTAGA
GTTCAAACATCTTCAGCAACAAGTATCAACGCCTACATAACGGAACAGGG
GCGATAACTTTCCGTCTGGGCGGTGCGCGAGTCCTTTAAAGCACCCGTGC
TTCCATTTCTTCCTCTCATTTTCCCGACCCGCGCGCCTCTTGTGCCCTCA
AATCGATCGTCTCTGGTGTAGCCTCCCCCTCCCCCGGCGACAGAACTGGC
GTACGAGCAGACGGTCACCGACCTCTCCCGTCCGCGACAGCCGAAGCAAA
ATGGGACGGCGAACGTCTCGGGTCGGCCGGCCTTGCCTTCCGTCGTTATC
TACGCCTCGCGCACCCACAGCCAGCTAAGCCAGGCACGCACG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig113:486757..488548+

>mRNA_A-nodosum_M_contig113.46.1 ID=mRNA_A-nodosum_M_contig113.46.1|Name=mRNA_A-nodosum_M_contig113.46.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig113:486757..488548+ (Ascophyllum nodosum dioecious)
ATGCCAAGCTTTGACATTGATGGTACGCCTGTGGTTTTCCCTTTTAAGCC
TTACGACTGCCAACTGACCTACATTCGTGGTGTTATAACAGCGCTGAATG
AGTCGAAAAATGCTCTCCTGGAAAGCCCCACGGGCACCGGTAAGACCCTT
TGTCTGCTCTGCGCCTCTCTAGCCTGGCAACAGAAGAACGCCTCCGCCAT
GGAACCTCAGCCTCCCCCTCCCCCGGCGACAGAACTGGCGTACGAGCAGA
CGGTCACCGACCTCTCCCGTCCGCGACAGCCGAAGCAAAATGGGACGGCG
AACGTCTCGGGTCGGCCGGCCTTGCCTTCCGTCGTTATCTACGCCTCGCG
CACCCACAGCCAGCTAAGCCAGGCACGCACG
back to top