mRNA_A-nodosum_M_contig113.115.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.115.1
Unique NamemRNA_A-nodosum_M_contig113.115.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:860609..860823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size199
Hectar predicted targeting categorysignal anchor
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.5550373-CDS-A-nodosum_M_contig113:860608..8607231680866527.5550373-CDS-A-nodosum_M_contig113:860608..860723Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 860609..860723 -
1680866527.566838-CDS-A-nodosum_M_contig113:860740..8608171680866527.566838-CDS-A-nodosum_M_contig113:860740..860817Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 860741..860817 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.576755-UTR-A-nodosum_M_contig113:860817..8608231680866527.576755-UTR-A-nodosum_M_contig113:860817..860823Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 860818..860823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.115.1prot_A-nodosum_M_contig113.115.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 860609..860817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.115.1

>prot_A-nodosum_M_contig113.115.1 ID=prot_A-nodosum_M_contig113.115.1|Name=mRNA_A-nodosum_M_contig113.115.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
MSEEDIHHLATSLVVSSGPQNAWRGRHVTATLLHLLHGGGVNLLLFPLLS
VTSLLMSVTLLYSK
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mRNA from alignment at A-nodosum_M_contig113:860609..860823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.115.1 ID=mRNA_A-nodosum_M_contig113.115.1|Name=mRNA_A-nodosum_M_contig113.115.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=215bp|location=Sequence derived from alignment at A-nodosum_M_contig113:860609..860823- (Ascophyllum nodosum dioecious)
CTGTACATGTCGGAAGAAGACATTCATCACCTGGCGACTAGTCTAGTGGT
TAGCTCGGGGCCACAAAATGCGTGGCGAGGAAGGTGGCGGCGAGGGCAAG
ACACGTCACGGCTACTCTTCTTCACCTCCTCCACGGCGGGGGGGTCAACC
TCCTTCTCTTCCCCCTCCTGTCGGTCACCTCCCTCCTGATGTCCGTGACC
TTGCTGTACTCCAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig113:860609..860823-

>mRNA_A-nodosum_M_contig113.115.1 ID=mRNA_A-nodosum_M_contig113.115.1|Name=mRNA_A-nodosum_M_contig113.115.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig113:860609..860823- (Ascophyllum nodosum dioecious)
ATGTCGGAAGAAGACATTCATCACCTGGCGACTAGTCTAGTGGTTAGCTC
GGGGCCACAAAATGCGTGGCGAGGAAGACACGTCACGGCTACTCTTCTTC
ACCTCCTCCACGGCGGGGGGGTCAACCTCCTTCTCTTCCCCCTCCTGTCG
GTCACCTCCCTCCTGATGTCCGTGACCTTGCTGTACTCCAAA
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