mRNA_A-nodosum_M_contig113.10.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig113.10.3
Unique NamemRNA_A-nodosum_M_contig113.10.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: D7FLH1_ECTSI (Protein YIF1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH1_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 4.680e-104
Identity = 169/224 (75.45%), Postives = 192/224 (85.71%), Query Frame = 2 
Query:  518 QPPLDWHQWAPPGVNKQVLNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDD-GRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFFMVR 1186
            + PLDWHQW P G+N Q+LN+G +V  ++L+        +QYQPRVSG+WNTLKVYFTVDN YV++KLKVLL  ++KKDW+RLPSEDEVKDD GRPKFERP+ADVNAPDLYVPLMSFITFVL+TGYAKG SAAA SD   TFSPEVLTEVTSSCIVTQLL+VLLIRLGLYLLNSPAV+LDLVAYTGY+YVGL INMTVG+  G  WYY+AL WTG MMSFFM +
Sbjct:   51 EQPLDWHQWTPDGMNAQMLNVGGNVASNFLKSNV-----AQYQPRVSGYWNTLKVYFTVDNRYVLKKLKVLLLSVLKKDWFRLPSEDEVKDDQGRPKFERPVADVNAPDLYVPLMSFITFVLLTGYAKG-SAAALSDGAGTFSPEVLTEVTSSCIVTQLLEVLLIRLGLYLLNSPAVVLDLVAYTGYKYVGLCINMTVGVFSGKTWYYLALLWTGSMMSFFMFK 268
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: A0A6H5JNN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN8_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 2.710e-103
Identity = 167/221 (75.57%), Postives = 191/221 (86.43%), Query Frame = 2 
Query:  524 PLDWHQWAPPGVNKQVLNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFFMVR 1186
            PLDWHQW P G+N Q+LN+G +V  ++L+        +QYQPRVSG+WNTLKVYFTVDN YV++KLKVLL  +++KDW+RLPSEDEVKDDGRPKFERP+ADVNAPDLYVPLMSFITFVL+TGYAKG SAAA SD   TFSPEVLTEVTSSCIVTQLL+VLLIRLGLYLLNSPAV+LDL+AYTGY+YVGL INMTVG+  G  WYY+AL WTG MMSFFM +
Sbjct:  180 PLDWHQWTPDGMNAQMLNVGGNVASNFLKSNV-----AQYQPRVSGYWNTLKVYFTVDNRYVLKKLKVLLLSVLRKDWFRLPSEDEVKDDGRPKFERPVADVNAPDLYVPLMSFITFVLLTGYAKG-SAAALSDGAGTFSPEVLTEVTSSCIVTQLLEVLLIRLGLYLLNSPAVVLDLIAYTGYKYVGLCINMTVGVFSGRTWYYLALLWTGSMMSFFMFK 394
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: A0A835YSN9_9STRA (Protein YIF1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN9_9STRA)

HSP 1 Score: 210 bits (535), Expect = 9.170e-59
Identity = 113/209 (54.07%), Postives = 148/209 (70.81%), Query Frame = 2 
Query:  569 VLNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDE-VKDDGRP--KFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFFMVR 1186
            +LNMG ++ K ++         ++YQP VSGFW  LK YF VDN YV+RK KVLL P++KK W+R+P+E+     DG    KF RP  D NAPDLY+PLM+FIT  L++G+ KG ++         F+PEVL EVTSS +V QLL+VLL+RLGLYLL +PA +LDLVA+TGY++V L INM VGI LG   YYVAL +TGLM ++FM++
Sbjct:    1 MLNMGGTMAKSFISSNM-----ARYQPGVSGFWALLKHYFAVDNAYVLRKFKVLLLPVLKKSWHRVPAEEAGAAQDGSAQFKFARPCVDENAPDLYLPLMAFITHALISGFVKGRAS--------NFTPEVLVEVTSSAMVVQLLEVLLVRLGLYLLGAPAAMLDLVAFTGYKFVALCINMAVGIALGRTGYYVALVYTGLMTAYFMLK 196
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: W7TGL4_9STRA (Protein YIF1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGL4_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.190e-47
Identity = 109/250 (43.60%), Postives = 150/250 (60.00%), Query Frame = 2 
Query:  506 GVGGQPPLDWHQWA-PPGVNKQVLNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDG----------------------RPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFFMVR 1186
            G G QP +D+   A     N Q  +MG  + ++YL         S+Y P V+  W+ LK YF V++ YV RKL  L+FP  K+ W R     ++KD G                      RP+++ P+ D NAPDLY+PLM+F+T+VLVTGYAKG          N+F+PEVL EVTSSC+V QLL++ +IRLGLYLL +PA +LDL+A TGY+YV L  NM +G+ LG R Y  A+ +TGL M++F ++
Sbjct:   87 GQGHQPNMDFGLNAITAAANSQAFSMGVGMGQEYLNASV-----SRYTPWVTSVWHGLKYYFAVNHHYVKRKLFTLVFPYRKRHWRR-----QMKDSGAAGSSGAYGQQGGNADSASAMYRPQYQVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTK--------NSFTPEVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPATLLDLLAVTGYKYVALNFNMVLGLNLGPRVYLAAMVYTGLAMAYFSLK 318
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: A0A024GGU5_9STRA (Protein YIF1 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.690e-38
Identity = 85/207 (41.06%), Postives = 121/207 (58.45%), Query Frame = 2 
Query:  557 VNKQVLNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFF 1177
            +   +  +  S   D+LQ Q + Y+   Y     G W  LK YFTVDN YV  +LK+LLFP   K+W R+    +  D  + K+  PI D+NAPDLY+PLM F+T++L+ GY KGAS        N FSP+V+    S C+V QL++V ++   LYLLNS    LDL+A++GY+Y  L I+       G   YY +L +TG+ +S+F
Sbjct:   76 IRNPMAGVAMSTASDFLQKQSQAYIPGAY-----GVWGRLKHYFTVDNNYVKNRLKILLFPFWHKNWRRI---GDTTDPNQNKYAPPINDINAPDLYIPLMGFLTYILIVGYTKGAS--------NQFSPDVIGADASYCLVMQLIEVAILASFLYLLNSSVSFLDLIAFSGYKYTSLVIDTICYQLFGSLAYYGSLIYTGIALSYF 266
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: A0A024UUY6_9STRA (Protein YIF1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUY6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 5.970e-38
Identity = 89/202 (44.06%), Postives = 128/202 (63.37%), Query Frame = 2 
Query:  572 LNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFF 1177
            +N G  +++D    Q K ++       ++ F  ++K YFTV+N YVV +LK+LL P + KDW R+   +    D    +  P  D NAPDLY+PLMSF+T++L+ GY KGAS          F+P+V+T+V++SC + QLL++ L++LGLYLLNS    LDLV++TGY+YV L +N  V + LG   YY  LA+TGL  SFF
Sbjct:  121 MNHGAKLMED----QVKSFMPGAAAGALNMF-GSVKYYFTVNNTYVVHRLKMLLCPFLHKDWRRIVQSEGNGTDVA--YAPPSMDKNAPDLYIPLMSFVTYILIVGYIKGASGR--------FNPDVITDVSTSCCLLQLLEICLMKLGLYLLNSQINWLDLVSFTGYKYVALVLNTVVHLVLGYLPYYAVLAYTGLATSFF 307
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: A0A6A5A968_9STRA (Protein YIF1 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A968_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.610e-38
Identity = 90/206 (43.69%), Postives = 131/206 (63.59%), Query Frame = 2 
Query:  572 LNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPK----FERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFF 1177
            +N G  +++D    Q K ++       ++ F  ++K YFTV+N YVV +LK+LL P + KDW R+     V+++G       +  P  D NAPDLY+PLMSF+T++L+ GY KGAS          F+P+V+TEV++ C + QL+++ L++LGLYLLNS    LDLV++TGY+YV L IN  V + LG   YYV LA+TG+  SFF
Sbjct:   26 MNHGAKMMED----QVKSFMPGAAAGALNMF-GSVKYYFTVNNTYVVHRLKMLLCPFIHKDWRRI-----VQNEGNAGVDVVYAPPSMDKNAPDLYIPLMSFVTYILIVGYIKGASGR--------FNPDVITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYKYVALVINTVVHLILGYIPYYVVLAYTGIATSFF 213
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: W4F9U6_9STRA (Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9U6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.290e-37
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 2 
Query:  572 LNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFF 1177
            +N G  +++D    Q K ++       ++ F  ++K YFTV+N YVV +LK+LL P + KDW R+   +         +  P  D NAPDLY+PLMSF+T++L+ GY KGAS          F+P+V+TEV++ C + QL+++ L++LGLYLLNS    LDLV++TGY+YV L IN  V + LG   YYV LA+TG+  SFF
Sbjct:  126 MNHGAKMMED----QVKSFMPGAAAGALNMF-GSVKYYFTVNNTYVVHRLKMLLCPFIHKDWRRIVQNEGNNTGVDVVYAPPSMDKNAPDLYIPLMSFVTYILIVGYIKGASGR--------FNPDVITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYKYVALVINTVVHLILGYIPYYVVLAYTGIATSFF 314
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: A0A397AV18_9STRA (Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AV18_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.390e-37
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 2 
Query:  572 LNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFF 1177
            +N G  +++D    Q K ++       ++ F  ++K YFTV+N YVV +LK+LL P + KDW R+   +         +  P  D NAPDLY+PLMSF+T++L+ GY KGAS          F+P+V+TEV++ C + QL+++ L++LGLYLLNS    LDLV++TGY+YV L IN  V + LG   YYV LA+TG+  SFF
Sbjct:  141 MNHGAKMMED----QVKSFMPGAAAGALNMF-GSVKYYFTVNNTYVVHRLKMLLCPFIHKDWRRIVQNEGNNTGVDVVYAPPSMDKNAPDLYIPLMSFVTYILIVGYIKGASGR--------FNPDVITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYKYVALVINTVVHLILGYIPYYVVLAYTGIATSFF 329
[Close]
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Match: F0WGG6_9STRA (Protein YIF1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WGG6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.460e-37
Identity = 87/203 (42.86%), Postives = 119/203 (58.62%), Query Frame = 2 
Query:  569 VLNMGESVVKDYLQVQYKDYLKSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDEVKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDGNTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQYVGLGINMTVGICLGLRWYYVALAWTGLMMSFF 1177
            V  +  S   D++Q Q + Y+   Y     G W  LK YFTVDN YV  +LK+LLFP   K+W RL    +  D    K+  PI D+NAPDLY+PLM F+T++L+ GY KGAS        N FSP+V+    S C+V QLL+V ++   LYLLNS    LDL+A++GY+Y  L I+       G   YY +L +TG+ +S+F
Sbjct:  160 VAGVAMSTASDFIQKQSQAYIPGAY-----GVWERLKHYFTVDNNYVKNRLKILLFPFWHKNWRRL---GDTTDPNYNKYAAPINDINAPDLYIPLMGFLTYILIVGYTKGAS--------NQFSPDVIGADASYCLVMQLLEVAILASFLYLLNSSVSFLDLIAFSGYKYTSLVIDTICYQLFGSLAYYASLIYTGVALSYF 346
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.10.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLH1_ECTSI4.680e-10475.45Protein YIF1 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JNN8_9PHAE2.710e-10375.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSN9_9STRA9.170e-5954.07Protein YIF1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TGL4_9STRA1.190e-4743.60Protein YIF1 n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A024GGU5_9STRA5.690e-3841.06Protein YIF1 n=1 Tax=Albugo candida TaxID=65357 Re... [more]
A0A024UUY6_9STRA5.970e-3844.06Protein YIF1 n=1 Tax=Aphanomyces invadans TaxID=15... [more]
A0A6A5A968_9STRA6.610e-3843.69Protein YIF1 n=3 Tax=Aphanomyces astaci TaxID=1120... [more]
W4F9U6_9STRA1.290e-3743.56Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=1120... [more]
A0A397AV18_9STRA1.390e-3743.56Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=1120... [more]
F0WGG6_9STRA1.460e-3742.86Protein YIF1 n=1 Tax=Albugo laibachii Nc14 TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:38793..43498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLH1
Preferred nameYIF1B
PFAMsYIF1
Model size2695
Max annot lvl2759|Eukaryota
KEGG koko:K08023,ko:K20362
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0023052,GO:0030134,GO:0030135,GO:0030173,GO:0030968,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0032989,GO:0033036,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Exons8
Evalue6.1e-109
EggNOG OGsCOG5197@1|root,KOG3094@2759|Eukaryota
DescriptionER to Golgi vesicle-mediated transport
Cds size1602
COG categoryI
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.10.3prot_A-nodosum_M_contig113.10.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig113 38824..42168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.9537473-UTR-A-nodosum_M_contig113:38792..388231680866527.9537473-UTR-A-nodosum_M_contig113:38792..38823Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 38793..38823 +
1680866528.0352564-UTR-A-nodosum_M_contig113:42168..422361680866528.0352564-UTR-A-nodosum_M_contig113:42168..42236Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 42169..42236 +
1680866528.0460405-UTR-A-nodosum_M_contig113:42261..423951680866528.0460405-UTR-A-nodosum_M_contig113:42261..42395Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 42262..42395 +
1680866528.054523-UTR-A-nodosum_M_contig113:42638..434981680866528.054523-UTR-A-nodosum_M_contig113:42638..43498Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig113 42639..43498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866527.966146-CDS-A-nodosum_M_contig113:38823..393601680866527.966146-CDS-A-nodosum_M_contig113:38823..39360Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 38824..39360 +
1680866527.9767632-CDS-A-nodosum_M_contig113:39967..400901680866527.9767632-CDS-A-nodosum_M_contig113:39967..40090Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 39968..40090 +
1680866527.989671-CDS-A-nodosum_M_contig113:40299..404011680866527.989671-CDS-A-nodosum_M_contig113:40299..40401Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 40300..40401 +
1680866527.9998024-CDS-A-nodosum_M_contig113:40825..409811680866527.9998024-CDS-A-nodosum_M_contig113:40825..40981Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 40826..40981 +
1680866528.0100124-CDS-A-nodosum_M_contig113:41301..414291680866528.0100124-CDS-A-nodosum_M_contig113:41301..41429Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 41302..41429 +
1680866528.023965-CDS-A-nodosum_M_contig113:41612..421681680866528.023965-CDS-A-nodosum_M_contig113:41612..42168Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig113 41613..42168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig113.10.3

>prot_A-nodosum_M_contig113.10.3 ID=prot_A-nodosum_M_contig113.10.3|Name=mRNA_A-nodosum_M_contig113.10.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=534bp
MSLPRPGGHFGEKKASSIYSGGPSSTSNAFAAYNAPSATPQHHYNPVASN
TPGQAGFSYSGASGSGGGGDGFGTAGAGVPQGFARETPPVGGTPAGGALG
RGAGDQWDQYGFSNVGIGGGSGRGSGGMDAFSGSVGSAPGGAMGIGGRAG
ANQQGAGAGVGGQPPLDWHQWAPPGVNKQVLNMGESVVKDYLQVQYKDYL
KSQYQPRVSGFWNTLKVYFTVDNGYVVRKLKVLLFPLMKKDWYRLPSEDE
VKDDGRPKFERPIADVNAPDLYVPLMSFITFVLVTGYAKGASAAAFSDDG
NTFSPEVLTEVTSSCIVTQLLQVLLIRLGLYLLNSPAVILDLVAYTGYQY
VGLGINMTVGICLGLRWYYVALAWTGLMMSFFMVRESQRYPFVTVFAITE
SHNNSWHLVCIFIRASISPISFGHALVQQQQESLVEELRTLLSFAGVCWA
VALGSCRIAARVLRSLFRGLKWHSREVCAHSATKAQLGGMRSDGFGLLGN
WRTTASWSVRQSRSQPPRRIVTFPRRQKLDAGT*
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mRNA from alignment at A-nodosum_M_contig113:38793..43498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig113.10.3 ID=mRNA_A-nodosum_M_contig113.10.3|Name=mRNA_A-nodosum_M_contig113.10.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4706bp|location=Sequence derived from alignment at A-nodosum_M_contig113:38793..43498+ (Ascophyllum nodosum dioecious)
GGTCCCTAGCCTCATCTTCAGCTGTCACGCGATGAGCCTTCCACGACCCG
GGGGACATTTCGGTGAAAAAAAGGCAAGCAGTATCTACAGCGGTGGCCCT
AGCTCTACGTCGAACGCCTTCGCCGCCTACAACGCCCCTTCCGCCACCCC
GCAACACCACTACAATCCCGTGGCCAGTAATACTCCGGGTCAGGCGGGGT
TCTCGTACAGTGGAGCGAGCGGGAGCGGTGGTGGCGGGGATGGGTTTGGA
ACCGCTGGAGCGGGAGTCCCTCAAGGCTTCGCAAGAGAGACTCCTCCGGT
AGGAGGGACTCCGGCAGGGGGGGCTTTGGGACGGGGGGCCGGCGACCAAT
GGGATCAATACGGGTTCTCAAACGTTGGGATCGGCGGAGGTTCAGGGCGG
GGATCAGGTGGTATGGATGCCTTCAGTGGTAGCGTGGGGTCGGCTCCAGG
GGGTGCGATGGGGATAGGGGGGCGGGCGGGCGCAAATCAGCAAGGTGCTG
GTGCCGGCGTCGGAGGACAGCCGCCACTGGACTGGCATCAATGGGCGCCG
CCCGGCGTAAACAAGCAGGTGACGAGGTGTGTGGGCTGTCGACCTTCGAC
GCCCATTTTCGTGTATTCCTCGTTGCAACTGTGAAAGTCTCGAGCGCACG
CGCGGACGAAGTCGATCCGCCCTTGTCGGGTTGGCTTGAATGCCGCTTTG
ATCCTTCCCTAATCGGACCGCTATCTATCTGGACGGTTTCGTTCTGGAAG
GTTCACGCTTCCATGTACGCTAATCTCGCATTAGATCCATTTCACAACCG
ACACTCACGAGAGCGCTTGTGGCGTAGTAATGTTACGGTACAAGAGAGCG
CGCAAACTGATGTAGCGAGTGAGATAGATACGGTCTTTCACGAACGCGTG
GAGAAGCCACGAACAGGCGACACTTGCTTTTTGGGAAGTTTATCCCAGCT
CCCACCTACGCCAACCGTTCAAGTGGTGAGACGCGATAGTTCCCGAAACA
CTCAGTCATGGGATCGGCAACCCTGCATCCTGAGCCTAGTAATGGCGCTA
CAGTTCTTTGATGGTCGTCTCGGAGGTCTAGCTTGGTTTTCCTCACCCAA
TCCTCCAGCGATTTTTCACGGGCGTTTCGTGGCTTTTATGTCATTCGATA
CTGTTTAATATATCGCCGAAAAAAGGTGCTCAACATGGGGGAAAGCGTGG
TGAAGGACTACCTCCAGGTCCAATATAAGGACTACCTCAAGAGCCAGTAC
CAGCCGCGAGTTTCCGGCTTCTGGAACACCCTCAAGGTGTACTTCACGGT
ACGTGCATCTCCGCCACCCTTTCCCATTTACACTATTTTGTCCCCTGTCC
AGATTCGCTCAGGACTTGCTGTGCAGCTCGCTTTTTTCCCTCCAACATCG
CAAGTTCAACCCGTGCGTGCAACCCACGAGTGTGTATGGCCCGCACGCGC
GCCTTGACGTGAGGAGACTTGGTTTACACCCCGCTTTCGCTCGTCTTGCC
GTCGAAGGTGGACAACGGGTACGTGGTGAGGAAGTTGAAAGTTCTGCTCT
TTCCCTTGATGAAAAAGGACTGGTACCGGCTGCCGTCCGAGGACGAAGTC
AAGGACGACGTGAGTACCTGTGCTGCGGAAATTAGATTGAGTGGGGGGGG
TGTGATTGGTTGGTGACGTTTCGTCCCCGTTCCCGCTCGAGGCTGATAGA
ACGACCCTTCCGAGGTTCGTTCCTCTGTTGCTACCATCAACTATTAATAC
TAGTGTAGTCGTGATACGTTTAGCGTCTCTGCACGGCGGTGGCTGGGATA
CGAAGATCCCTGCTCGCACGTTGCAATGCTGTTGCTCTGTGAGGTAGTGA
CACGCTCTGCGCCTCAGGAGCCCGCAACCGGGAAAACCGCGCTTCGACGT
TCGCCATACTGTTCACACAGATGATCCCCTTTTGCCGTGGATGCTAGGCG
CGAGCTTGTCTCATTCCGTCTCCTCTCCTCTTCCCCCCGCCTTATCTACA
CCTGCTCGCTGATACTAACCTCAACATCAGCAGGGACGGCCAAAGTTCGA
GCGCCCGATCGCGGACGTGAATGCTCCCGATCTGTACGTGCCTCTGATGT
CTTTCATCACGTTCGTCTTGGTTACGGGTTACGCGAAGGGGGCGTCGGCA
GCGGCATTTTCAGACGATGGGAACACCTTTTCACCCGAGGTGGGCACACA
TCCTCGAAGCCTTAAGAAAATATGTATTTCATATAGTGTTATGTACATCA
TGACCTTTGTCATCCCCCCCCCCGCCCCTGGATCGTACGTAAAACGGTGG
GGCGGGTTGGTTACGCTTCGACACCGGCTCATCCGAGCTTTAAAACCGAA
ACCACACGGACACGTACGTACGCAATTTTGTCTTGCTCTTGTCGCCAGTT
GATATCTCCATGTCGAAGTAGCAGCTCCTAGCCTATTAGTAGAGTGTTTG
CAATGCGACTACGGGTGTTTTTATTGCGCGATTTGCTACCGTTGCTTTGC
CCCCCTCAGGTGTTGACGGAGGTGACGAGCTCGTGCATCGTCACACAATT
GCTCCAGGTCCTCCTCATCAGACTGGGCCTGTACCTGCTCAACAGCCCTG
CCGTCATCCTAGATCTCGTCGCCTACACGGGCTACCAGTGCGTGCCCGGC
TGTGTCCAATGCCCGCTTGACGCTATTTGAGATCGAAGGTTTCCATGGTT
TAAGCAAGACTTTTCGAGACTTTTGACATACTATTTTTGGTCCTCCATTT
TTGGTGCTCGCTAGTGGTCGTGCGGACAGCGACATGTGCGGTGACTGTGC
TTGGCTGCCCCTGCCCTCAGGTACGTTGGCCTGGGCATCAATATGACCGT
CGGCATCTGCCTGGGCTTGAGATGGTATTACGTCGCCCTCGCTTGGACGG
GCCTTATGATGTCCTTCTTCATGGTGAGAGAGAGCCAACGGTACCCATTT
GTGACTGTTTTCGCCATCACGGAGAGTCACAACAACAGTTGGCACCTCGT
ATGTATTTTCATACGTGCGTCCATCTCCCCCATTTCTTTTGGACACGCTT
TGGTTCAGCAGCAGCAAGAAAGCTTGGTGGAAGAGTTACGCACTTTATTG
TCATTCGCGGGCGTGTGTTGGGCGGTGGCCCTCGGTAGTTGCCGAATCGC
CGCGCGAGTCCTGCGTAGTCTTTTTCGTGGCTTGAAATGGCACAGCAGGG
AAGTGTGCGCACACTCGGCCACCAAAGCGCAGTTGGGAGGAATGCGGTCT
GACGGGTTCGGATTACTCGGTAATTGGCGAACGACGGCTTCGTGGAGTGT
ACGCCAGAGCCGGAGTCAACCGCCCCGACGAATTGTAACGTTTCCTCGCC
GGCAAAAGTTGGACGCAGGGACTTGACGTAAGCTGCTGCCGAATCAGTTT
AAGGGCCGCGATGTACAAGTAATGGTAGACGAAGGCACACACAGGAACTT
GAGGTTTGATGCTATAATCGACGCGCGTTGCGCCGCGCAACCTTCTCCTG
CTCTGCCCACCGCCGGGTGTCATGCTCTTGCGCCACCGCAGTTCAAAACG
ATGGCGCATACGGTCCCGACGGGGTATTCTTCGCGAGAAATCATGATCCT
GGGGTGAGATCCTCTTTATAAGCTATAACATTCAGGCATATCGTTGGTGC
GATGCGGATGGGGCAGGGTTTGTCTTTGAACGCGTCGGCCAATGTTTTTT
ATTTTGACATTTCGCCTCATTTGAGTGTATCTTTCATTTTTGTGGATTTC
CATCCAGGCCTGACCGCGCTTGTCAATAAATAATCCATGACGTTTATTTT
TTTGCACGATGCGCCGCCGACGTCTGTCCCTCATTTTCCCTCTCAGGATC
GGTATACTGCAGCTGTTGAGCATGCTGTGGCTGGGGCATACGAATGACCT
CAGTTGACCGAGACAAGTCGAAAGGCCACATCGTGCCCTTACAAGAGCGC
ATTTCGTGGACATTTGATTGTGTGTGTGTGACCCTTTCTTCGTTGCAAAT
ATGAAAATTGTCGATTTAGATATCATGACCGAGAAGACACATCGTGGGGG
TGCATGTGCACCAAAAATGTTAAGAGATCGTCGCCACGTCGTTGTTGTGT
CTACCATACTGGCGCAGAGCAATCGAGCAACTGCCGCATCGCACCAGTCG
TGTCTTGGCTTGGGTTCTGGAAGATTTGGCTTCCGCAGAACTCCAATTTT
TCGTCTGGCTTCACCGACGCTCGATTTTGAGCAGAAGAGCGCTACAGTAT
GGATTTTCTTGCTCCCAAGAACGAGGGAAACTTGGAATCGATCACTTTGA
CGGAACACACTATTTCACGCCGGAAGATGAGGGCCGAACTCAAGCTCCGC
CACGGCCCGGTTGGCTAACGCCCCCTTTGTCGGCGCCGCTGAACTGCAAT
CGCATTCGTTCGTAGTGCCGAAGCTCGTCTTCTGACACAGAGGGCGTCAC
GGACTCGCACGCCGCCTGCGCAGCGACACACGTAACGTATATCCCGCGGG
TTGGAATTGAAGTCTCTGTTTTTCACGAAACTTTAATTATTGACAGTACT
ATTTCGACGGTGATATTATGTAAATCGTGCGACTATGACCAATATTAGGC
CAGTGTCGAAACTTGTATTTGAGGTCTTTTTTTTGCGAGTTCGAAGTGTA
ACGTCCCTGCCTTGCACGGAGTTTGTAAAGAAAAATCTGAACGCATCCTT
CTGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig113:38793..43498+

>mRNA_A-nodosum_M_contig113.10.3 ID=mRNA_A-nodosum_M_contig113.10.3|Name=mRNA_A-nodosum_M_contig113.10.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at A-nodosum_M_contig113:38793..43498+ (Ascophyllum nodosum dioecious)
ATGAGCCTTCCACGACCCGGGGGACATTTCGGTGAAAAAAAGGCAAGCAG
TATCTACAGCGGTGGCCCTAGCTCTACGTCGAACGCCTTCGCCGCCTACA
ACGCCCCTTCCGCCACCCCGCAACACCACTACAATCCCGTGGCCAGTAAT
ACTCCGGGTCAGGCGGGGTTCTCGTACAGTGGAGCGAGCGGGAGCGGTGG
TGGCGGGGATGGGTTTGGAACCGCTGGAGCGGGAGTCCCTCAAGGCTTCG
CAAGAGAGACTCCTCCGGTAGGAGGGACTCCGGCAGGGGGGGCTTTGGGA
CGGGGGGCCGGCGACCAATGGGATCAATACGGGTTCTCAAACGTTGGGAT
CGGCGGAGGTTCAGGGCGGGGATCAGGTGGTATGGATGCCTTCAGTGGTA
GCGTGGGGTCGGCTCCAGGGGGTGCGATGGGGATAGGGGGGCGGGCGGGC
GCAAATCAGCAAGGTGCTGGTGCCGGCGTCGGAGGACAGCCGCCACTGGA
CTGGCATCAATGGGCGCCGCCCGGCGTAAACAAGCAGGTGCTCAACATGG
GGGAAAGCGTGGTGAAGGACTACCTCCAGGTCCAATATAAGGACTACCTC
AAGAGCCAGTACCAGCCGCGAGTTTCCGGCTTCTGGAACACCCTCAAGGT
GTACTTCACGGTGGACAACGGGTACGTGGTGAGGAAGTTGAAAGTTCTGC
TCTTTCCCTTGATGAAAAAGGACTGGTACCGGCTGCCGTCCGAGGACGAA
GTCAAGGACGACGGACGGCCAAAGTTCGAGCGCCCGATCGCGGACGTGAA
TGCTCCCGATCTGTACGTGCCTCTGATGTCTTTCATCACGTTCGTCTTGG
TTACGGGTTACGCGAAGGGGGCGTCGGCAGCGGCATTTTCAGACGATGGG
AACACCTTTTCACCCGAGGTGTTGACGGAGGTGACGAGCTCGTGCATCGT
CACACAATTGCTCCAGGTCCTCCTCATCAGACTGGGCCTGTACCTGCTCA
ACAGCCCTGCCGTCATCCTAGATCTCGTCGCCTACACGGGCTACCAGTAC
GTTGGCCTGGGCATCAATATGACCGTCGGCATCTGCCTGGGCTTGAGATG
GTATTACGTCGCCCTCGCTTGGACGGGCCTTATGATGTCCTTCTTCATGG
TGAGAGAGAGCCAACGGTACCCATTTGTGACTGTTTTCGCCATCACGGAG
AGTCACAACAACAGTTGGCACCTCGTATGTATTTTCATACGTGCGTCCAT
CTCCCCCATTTCTTTTGGACACGCTTTGGTTCAGCAGCAGCAAGAAAGCT
TGGTGGAAGAGTTACGCACTTTATTGTCATTCGCGGGCGTGTGTTGGGCG
GTGGCCCTCGGTAGTTGCCGAATCGCCGCGCGAGTCCTGCGTAGTCTTTT
TCGTGGCTTGAAATGGCACAGCAGGGAAGTGTGCGCACACTCGGCCACCA
AAGCGCAGTTGGGAGGAATGCGGTCTGACGGGTTCGGATTACTCGGTAAT
TGGCGAACGACGGCTTCGTGGAGTGTACGCCAGAGCCGGAGTCAACCGCC
CCGACGAATTGTAACGTTTCCTCGCCGGCAAAAGTTGGACGCAGGGACTT
GA
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